ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal31c06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KL61_DROME (P46863) Bipolar kinesin KRP-130 (Kinesin-like protei... 33 0.61
2ANKH_BRARE (P58368) Progressive ankylosis protein homolog (ANK) 32 1.4
3PTAFR_BOVIN (Q9TTY5) Platelet-activating factor receptor (PAF-R)... 30 5.2
4TS1R1_HUMAN (Q7RTX1) Taste receptor type 1 member 1 precursor (G... 30 8.8
5CHS2_EXODE (P30601) Chitin synthase 2 (EC 2.4.1.16) (Chitin-UDP ... 30 8.8

>KL61_DROME (P46863) Bipolar kinesin KRP-130 (Kinesin-like protein Klp61F)|
          Length = 1066

 Score = 33.5 bits (75), Expect = 0.61
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +2

Query: 59  HGHRRHRQWNRLGALSIPSADVLPNLEEE 145
           H  + H++  +LGA+S+P A+ L NL+EE
Sbjct: 683 HAKQMHKKLEQLGAMSLPDAEELQNLQEE 711



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>ANKH_BRARE (P58368) Progressive ankylosis protein homolog (ANK)|
          Length = 501

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
 Frame = +3

Query: 48  DAIRTVIGVIGNGTALVLFLSPVPT----FYRIWKKKTVEQY------SAVPYLAT--LL 191
           D  + V+ ++  GT  ++F + +      +Y I K   V++        A  YLA   LL
Sbjct: 82  DRTKAVLCMVVAGTVAIVFHTLIAYTNLGYYIINKLHHVDESVGSKTRKAFLYLAAFPLL 141

Query: 192 NCMMWVLYGLPLVHPHSMLVITINGTGMVIELAYIALFL 308
           + M W   G+ L H HS+LV   + + +V ++ ++ + L
Sbjct: 142 DAMAWTHAGILLKHKHSLLVGCASISDVVAQIVFVGILL 180



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>PTAFR_BOVIN (Q9TTY5) Platelet-activating factor receptor (PAF-R) (PAFr)|
          Length = 342

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = -2

Query: 580 AVQQMPLTSEATDRNRGMYSTLLVWITIFMTESGAAYMPVPKRTQRMP 437
           AV +   T++AT R RG+  +L++W++I      A+Y  V   T R P
Sbjct: 118 AVTRPIKTAQATTRKRGILLSLIIWVSIV---GAASYFFVLDSTNREP 162



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>TS1R1_HUMAN (Q7RTX1) Taste receptor type 1 member 1 precursor (G-protein|
           coupled receptor 70) (Gm148)
          Length = 841

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
 Frame = +3

Query: 102 FLSPVPTFYRIW-KKKTVEQYSAVPYLATLLNCMMWVLYGLPLV------HPHSMLV--I 254
           F + VPTFY  W +      +  +   A LL C+ W++   PL        PH +++   
Sbjct: 662 FSTKVPTFYHAWVQNHGAGLFVMISSAAQLLICLTWLVVWTPLPAREYQRFPHLVMLECT 721

Query: 255 TINGTGMVIELAYIAL 302
             N  G ++   Y  L
Sbjct: 722 ETNSLGFILAFLYNGL 737



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>CHS2_EXODE (P30601) Chitin synthase 2 (EC 2.4.1.16) (Chitin-UDP|
           acetyl-glucosaminyl transferase 2) (Class-I chitin
           synthase 2)
          Length = 928

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = +3

Query: 174 YLATLLNCMMWVLYGLPLVHPHSMLVITINGTGMVIELAYIALFLT 311
           YL TLL C +  +   P  +P S +++ I  + +++ L + ++FLT
Sbjct: 654 YLGTLLYCFILSMGNRPQGNPKSYMMMVIFWSVLMVWLTFASIFLT 699


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,560,060
Number of Sequences: 219361
Number of extensions: 1188966
Number of successful extensions: 4029
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4029
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6655306086
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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