>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
           chloroplast precursor (RuBisCO activase A) (RA A)
          Length = 464

 Score =  225 bits (573), Expect(2) = 6e-84
 Identities = 112/113 (99%), Positives = 112/113 (99%)
 Frame = +3

Query: 60  MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDK 239
           MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDK
Sbjct: 1   MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDK 60

Query: 240 WKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYD 398
           WKGLAYDISDDQQDITRGKGIVDSLFQAPTG GTHEAVLSSYEYVSQGLRKYD
Sbjct: 61  WKGLAYDISDDQQDITRGKGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYD 113



 Score =  105 bits (262), Expect(2) = 6e-84
 Identities = 49/49 (100%), Positives = 49/49 (100%)
 Frame = +1

Query: 400 FDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKS 546
           FDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKS
Sbjct: 114 FDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKS 162

>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 432

 Score =  194 bits (494), Expect(2) = 4e-74
 Identities = 100/115 (86%), Positives = 104/115 (90%), Gaps = 2/115 (1%)
 Frame = +3

Query: 60  MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTD- 236
           MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSS  NRF VMA E +DE + TD 
Sbjct: 1   MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSNINRFKVMAKE-LDEGKQTDQ 59

Query: 237 -KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYD 398
            +WKGLAYDISDDQQDITRGKG VDSLFQAPTGDGTHEAVLSSYEY+SQGLR YD
Sbjct: 60  DRWKGLAYDISDDQQDITRGKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYD 114



 Score =  103 bits (256), Expect(2) = 4e-74
 Identities = 46/49 (93%), Positives = 49/49 (100%)
 Frame = +1

Query: 400 FDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKS 546
           FDNTMGGFYIAP+FMDKLVVH+SKNFMTLPNIK+PLILGIWGGKGQGKS
Sbjct: 115 FDNTMGGFYIAPSFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKS 163

>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 433

 Score =  166 bits (419), Expect(2) = 2e-63
 Identities = 87/119 (73%), Positives = 101/119 (84%), Gaps = 6/119 (5%)
 Frame = +3

Query: 60  MAAAFSSTVGAPASTPT--NFLGKKLKK-QVTSAVNYHGKSSKAN-RFTVMAAENIDEKR 227
           MAAAFSSTVGAPASTPT  +FLGKKL K QV++AV YHGKSS +N RF  MAA+ +DE +
Sbjct: 1   MAAAFSSTVGAPASTPTRSSFLGKKLNKPQVSAAVTYHGKSSSSNSRFKAMAAKEVDETK 60

Query: 228 NTD--KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYD 398
            TD  +WKGLAYDISDDQQDITRGKG+VD+LFQAP GDGTH AVLSSY+Y+SQG + Y+
Sbjct: 61  QTDEDRWKGLAYDISDDQQDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYN 119



 Score = 96.3 bits (238), Expect(2) = 2e-63
 Identities = 45/52 (86%), Positives = 46/52 (88%)
 Frame = +1

Query: 391 STTFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKS 546
           S  FDN M GFYIA  FMDKLVVHLSKNFMTLPNIK+PLILGIWGGKGQGKS
Sbjct: 117 SYNFDNMMDGFYIAKGFMDKLVVHLSKNFMTLPNIKVPLILGIWGGKGQGKS 168

>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,|
           chloroplast precursor (RuBisCO activase B) (RA B)
          Length = 425

 Score =  154 bits (389), Expect(2) = 1e-60
 Identities = 83/117 (70%), Positives = 94/117 (80%), Gaps = 4/117 (3%)
 Frame = +3

Query: 60  MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFT-VMAAEN-IDEKRNT 233
           MA+AFSSTVGAPASTPT FLGKK+K        YHG +   +R   VMAA+  +D+ + T
Sbjct: 1   MASAFSSTVGAPASTPTIFLGKKVKNY------YHGGNKMKSRVVRVMAAKKELDQGKQT 54

Query: 234 D--KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYD 398
           D  +WKGLAYDISDDQQDITRGKGIVDSLFQAP GDGTHEA+LSSYEY+SQGLRKYD
Sbjct: 55  DADRWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYD 111



 Score = 98.6 bits (244), Expect(2) = 1e-60
 Identities = 44/49 (89%), Positives = 47/49 (95%)
 Frame = +1

Query: 400 FDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKS 546
           FDNTM G YIAPAFMDKL+VHL+KNFMTLPNIK+PLILGIWGGKGQGKS
Sbjct: 112 FDNTMDGLYIAPAFMDKLIVHLAKNFMTLPNIKVPLILGIWGGKGQGKS 160

>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 474

 Score =  115 bits (288), Expect(2) = 8e-48
 Identities = 62/108 (57%), Positives = 76/108 (70%)
 Frame = +3

Query: 75  SSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLA 254
           S  V APAST   FLGKK    V +   +   + K+N    + A   D++ + D+W+GLA
Sbjct: 23  SGAVSAPAST---FLGKK----VVTVSRFAQSNKKSNGSFKVLAVKEDKQTDGDRWRGLA 75

Query: 255 YDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYD 398
           YD SDDQQDITRGKG+VDS+FQAP G GTH AVLSSYEYVSQGLR+Y+
Sbjct: 76  YDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLRQYN 123



 Score = 94.7 bits (234), Expect(2) = 8e-48
 Identities = 42/48 (87%), Positives = 46/48 (95%)
 Frame = +1

Query: 403 DNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKS 546
           DN M GFYIAPAFMDKLVVH++KNF+TLPNIK+PLILGIWGGKGQGKS
Sbjct: 125 DNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKS 172

>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 437

 Score =  112 bits (280), Expect(2) = 2e-47
 Identities = 61/110 (55%), Positives = 76/110 (69%), Gaps = 2/110 (1%)
 Frame = +3

Query: 75  SSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDK--WKG 248
           SS+   P+ST   FLG  LKK     VN    +SK +  ++    ++DE + TDK  WKG
Sbjct: 22  SSSASVPSST---FLGSSLKK-----VNSRFTNSKVSSGSLRIVASVDEDKQTDKDRWKG 73

Query: 249 LAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYD 398
           LA+D SDDQQDITRGKG VDSLFQAP G GTH A++SSYEY+S GLR+Y+
Sbjct: 74  LAFDTSDDQQDITRGKGKVDSLFQAPQGSGTHFAIMSSYEYISTGLRQYN 123



 Score = 96.3 bits (238), Expect(2) = 2e-47
 Identities = 42/49 (85%), Positives = 47/49 (95%)
 Frame = +1

Query: 400 FDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKS 546
           FDN M G+YIAPAFMDKLVVH++KNFMTLPN+K+PLILGIWGGKGQGKS
Sbjct: 124 FDNNMDGYYIAPAFMDKLVVHITKNFMTLPNMKVPLILGIWGGKGQGKS 172

>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
           (RubisCO activase alpha form)
          Length = 476

 Score =  113 bits (282), Expect(2) = 6e-47
 Identities = 62/124 (50%), Positives = 82/124 (66%), Gaps = 11/124 (8%)
 Frame = +3

Query: 60  MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSK----------ANRFTVMAAE 209
           MAAA+S TVGA    P +  G   +  +  +  + G S K          +  F ++A E
Sbjct: 1   MAAAYS-TVGAVNRAPLSLNGSGARASLVPSTAFFGSSLKKSAAKFPKASSGNFKIVAQE 59

Query: 210 -NIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGL 386
            + D++ + DKWKGLAYDISDDQQDITRGKG+VD+LFQAP   GTH AV+SSY+Y+SQGL
Sbjct: 60  ISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGL 119

Query: 387 RKYD 398
           R+Y+
Sbjct: 120 RQYN 123



 Score = 94.0 bits (232), Expect(2) = 6e-47
 Identities = 42/48 (87%), Positives = 46/48 (95%)
 Frame = +1

Query: 403 DNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKS 546
           DN M GFYIAPAFMDKLVVH++KNF++LPNIKIPLILGIWGGKGQGKS
Sbjct: 125 DNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKS 172

>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
           (RubisCO activase beta form)
          Length = 435

 Score =  113 bits (282), Expect(2) = 6e-47
 Identities = 62/124 (50%), Positives = 82/124 (66%), Gaps = 11/124 (8%)
 Frame = +3

Query: 60  MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSK----------ANRFTVMAAE 209
           MAAA+S TVGA    P +  G   +  +  +  + G S K          +  F ++A E
Sbjct: 1   MAAAYS-TVGAVNRAPLSLNGSGARASLVPSTAFFGSSLKKSAAKFPKASSGNFKIVAQE 59

Query: 210 -NIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGL 386
            + D++ + DKWKGLAYDISDDQQDITRGKG+VD+LFQAP   GTH AV+SSY+Y+SQGL
Sbjct: 60  ISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGL 119

Query: 387 RKYD 398
           R+Y+
Sbjct: 120 RQYN 123



 Score = 94.0 bits (232), Expect(2) = 6e-47
 Identities = 42/48 (87%), Positives = 46/48 (95%)
 Frame = +1

Query: 403 DNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKS 546
           DN M GFYIAPAFMDKLVVH++KNF++LPNIKIPLILGIWGGKGQGKS
Sbjct: 125 DNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKS 172

>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 439

 Score =  111 bits (277), Expect(2) = 4e-46
 Identities = 63/107 (58%), Positives = 75/107 (70%), Gaps = 3/107 (2%)
 Frame = +3

Query: 87  GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNT--DKWKGLAY 257
           GA AS PT+ F G  LKK V S V  + K +  +   V A + I+E + T  D+WKGLAY
Sbjct: 22  GAGASAPTSAFFGTSLKKAVASRVP-NSKVTNGSFKIVAAEKEIEESQQTNKDRWKGLAY 80

Query: 258 DISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYD 398
           DISDDQQDITRGKG+VD LFQAP   GTH AV+SSYEY+S GLR+ D
Sbjct: 81  DISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMSSYEYLSTGLRQLD 127



 Score = 93.2 bits (230), Expect(2) = 4e-46
 Identities = 42/53 (79%), Positives = 46/53 (86%)
 Frame = +1

Query: 388 GSTTFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKS 546
           G    DN   GFYIAPAF+DKLVVH++KNFMTLPNIK+PLILGIWGGKGQGKS
Sbjct: 122 GLRQLDNIKDGFYIAPAFLDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKS 174

>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
          Length = 442

 Score =  111 bits (278), Expect(2) = 1e-45
 Identities = 65/123 (52%), Positives = 77/123 (62%), Gaps = 16/123 (13%)
 Frame = +3

Query: 78  STVGAPASTP--------------TNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENI 215
           ST+GA   TP              T F GK LKK     V+    ++K+ R  V    ++
Sbjct: 6   STIGAVNKTPLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNKSLRI-VAEQIDV 64

Query: 216 DEKRNTD--KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLR 389
           D K+ TD  +WKGL  D SDDQQDITRGKG+VDSLFQAPTG GTH AVL SYEYVSQGLR
Sbjct: 65  DPKKQTDSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLR 124

Query: 390 KYD 398
           +Y+
Sbjct: 125 QYN 127



 Score = 91.3 bits (225), Expect(2) = 1e-45
 Identities = 40/48 (83%), Positives = 45/48 (93%)
 Frame = +1

Query: 403 DNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKS 546
           DN + GFYIAPAFMDKLVVH++KNF+ LPNIK+PLILGIWGGKGQGKS
Sbjct: 129 DNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKS 176

>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
          Length = 439

 Score =  108 bits (269), Expect(2) = 8e-45
 Identities = 61/114 (53%), Positives = 74/114 (64%), Gaps = 4/114 (3%)
 Frame = +3

Query: 69  AFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAE--NIDEKRNT--D 236
           + +++V   +   T F GK LKK     V+        NR   +AAE  + D K+ T  D
Sbjct: 17  SLNNSVAGTSVPSTAFFGKTLKKVYGKGVS---SPKVTNRSLRIAAEEKDADPKKQTYSD 73

Query: 237 KWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYD 398
           +WKGL  D SDDQQDI RGKG+VDSLFQAPTG GTH AVL SYEYVSQGLR+Y+
Sbjct: 74  RWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYN 127



 Score = 92.0 bits (227), Expect(2) = 8e-45
 Identities = 39/48 (81%), Positives = 46/48 (95%)
 Frame = +1

Query: 403 DNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKS 546
           DNT+ GFYIAP+FMDKLVVH++KNF+ LPNIK+PLILG+WGGKGQGKS
Sbjct: 129 DNTLDGFYIAPSFMDKLVVHITKNFLKLPNIKVPLILGVWGGKGQGKS 176

>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 441

 Score =  104 bits (260), Expect(2) = 2e-44
 Identities = 57/107 (53%), Positives = 77/107 (71%), Gaps = 3/107 (2%)
 Frame = +3

Query: 87  GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNT--DKWKGLAY 257
           G  AS P++ F G  LKK ++S V  + K +  +   V A + I+E + T  D+W+GLAY
Sbjct: 22  GGGASGPSSAFFGTSLKKVISSRVP-NSKLTSGSFKIVAADKEIEETQQTEGDRWRGLAY 80

Query: 258 DISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYD 398
           D+SDDQQDITRGKG+VDSLFQAP   GTH AV+SS++Y+S GLR+Y+
Sbjct: 81  DVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYLSAGLRQYN 127



 Score = 94.4 bits (233), Expect(2) = 2e-44
 Identities = 41/49 (83%), Positives = 46/49 (93%)
 Frame = +1

Query: 400 FDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKS 546
           FDN   GFYIAPAF+DKLVVH++KNFMTLPNIK+PLILG+WGGKGQGKS
Sbjct: 128 FDNIKDGFYIAPAFLDKLVVHIAKNFMTLPNIKVPLILGVWGGKGQGKS 176

>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 472

 Score =  105 bits (262), Expect(2) = 6e-44
 Identities = 61/104 (58%), Positives = 68/104 (65%), Gaps = 1/104 (0%)
 Frame = +3

Query: 90  APASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDIS 266
           A AS PT+ FLG  LKK           SS+    TV AAEN  E++NTDKW  LA D S
Sbjct: 23  AGASVPTSGFLGSSLKKHTNVRFP---SSSRTTSMTVKAAEN--EEKNTDKWAHLAKDFS 77

Query: 267 DDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYD 398
           DDQ DI RGKG+VDSLFQAP   GTH  + SS+EY SQGLRKYD
Sbjct: 78  DDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGLRKYD 121



 Score = 91.7 bits (226), Expect(2) = 6e-44
 Identities = 40/48 (83%), Positives = 45/48 (93%)
 Frame = +1

Query: 403 DNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKS 546
           DN +G FYIAPAFMDKLVVH++KNF+ LPNIKIPLILG+WGGKGQGKS
Sbjct: 123 DNMLGDFYIAPAFMDKLVVHITKNFLNLPNIKIPLILGVWGGKGQGKS 170

>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 459

 Score =  103 bits (258), Expect(2) = 6e-44
 Identities = 59/124 (47%), Positives = 74/124 (59%), Gaps = 14/124 (11%)
 Frame = +3

Query: 66  AAFSSTVGAPASTP--------------TNFLGKKLKKQVTSAVNYHGKSSKANRFTVMA 203
           AA  ST+GA +  P              T F GK LKK     V+       +NR   + 
Sbjct: 2   AASVSTIGAASKAPLSLNNSVAGTSVPSTAFFGKSLKKVYAKGVS---SPKVSNRNLRVV 58

Query: 204 AENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQG 383
           A+ +DE +  D+WKGL  + SDDQQDI RGKG+VDSLFQAPTG GTH A+++SYEYVSQ 
Sbjct: 59  AQEVDETKE-DRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQA 117

Query: 384 LRKY 395
           L+ Y
Sbjct: 118 LKTY 121



 Score = 93.2 bits (230), Expect(2) = 6e-44
 Identities = 40/48 (83%), Positives = 46/48 (95%)
 Frame = +1

Query: 403 DNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKS 546
           DN + GFYIAPAFMDKLVVH++KNF+TLPNIK+PLILG+WGGKGQGKS
Sbjct: 124 DNKLDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWGGKGQGKS 171

>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 413

 Score =  103 bits (258), Expect(2) = 1e-43
 Identities = 60/124 (48%), Positives = 75/124 (60%), Gaps = 14/124 (11%)
 Frame = +3

Query: 66  AAFSSTVGAPASTPTN------------FLGKKLKKQVTSAVNYHGKSSK--ANRFTVMA 203
           AA  ST+GA   T  N            FLG +LK      V+    +SK     F ++A
Sbjct: 2   AATVSTIGAVNRTTLNNSNYGGLVPNSAFLGSRLK------VSSRFTTSKMVTGNFKIVA 55

Query: 204 AENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQG 383
            ++ +++   DKW+GLA+D SDDQQDITRGKG+ D LFQAP G GTH AVLSSYEY+S G
Sbjct: 56  EQDEEKQTEKDKWRGLAFDTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAG 115

Query: 384 LRKY 395
           LR Y
Sbjct: 116 LRDY 119



 Score = 92.0 bits (227), Expect(2) = 1e-43
 Identities = 39/50 (78%), Positives = 46/50 (92%)
 Frame = +1

Query: 397 TFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKS 546
           ++DN + GFYIAPAFMDKL VH+ KNF+TLPNIK+PLILG+WGGKGQGKS
Sbjct: 120 SYDNNVDGFYIAPAFMDKLTVHIVKNFLTLPNIKVPLILGVWGGKGQGKS 169

>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 408

 Score = 83.2 bits (204), Expect(2) = 4e-27
 Identities = 34/50 (68%), Positives = 44/50 (88%)
 Frame = +1

Query: 397 TFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKS 546
           +F+N   GFYI+PAF+DK+ +H++KNFM LP IK+PLILGIWGGKGQGK+
Sbjct: 96  SFNNIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLILGIWGGKGQGKT 145



 Score = 57.8 bits (138), Expect(2) = 4e-27
 Identities = 30/62 (48%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
 Frame = +3

Query: 222 KRNTDKWKGL--AYDISDDQQDITRGKGIVDSLFQAPTG-DGTHEAVLSSYEYVSQGLRK 392
           ++   +W+ +    D SDDQQDITRG+ +VD LFQ   G  GTH AVLSS EY+SQ    
Sbjct: 37  RKQMGRWRSIDAGVDASDDQQDITRGREMVDDLFQGGFGAGGTHNAVLSSQEYLSQSRAS 96

Query: 393 YD 398
           ++
Sbjct: 97  FN 98

>RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 415

 Score = 64.7 bits (156), Expect = 2e-10
 Identities = 26/42 (61%), Positives = 36/42 (85%)
 Frame = +1

Query: 421 FYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKS 546
           +YIAP F+DKL VH++KNF+ LP +++PLILGI G KG+GK+
Sbjct: 3   YYIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKT 44

>RCA_ANASP (P58555) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 414

 Score = 63.9 bits (154), Expect = 3e-10
 Identities = 25/42 (59%), Positives = 36/42 (85%)
 Frame = +1

Query: 421 FYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKS 546
           +YIAP F+DKL VH++KNF+ +P +++PLILGI G KG+GK+
Sbjct: 3   YYIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKT 44

>PTR2_CANAL (P46030) Peptide transporter PTR2|
          Length = 623

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 10/59 (16%)
 Frame = -1

Query: 337 PSPVGAWKSESTMPFPLVMSCW----SSEISYAR------PFHLSVFLFSSMFSAAMTV 191
           P+P+ AWK+ S         CW    + E++Y R          ++FL  S FSAA+++
Sbjct: 488 PAPITAWKASSLFILAAAGECWAYTTAYELAYTRSPPALKSLVYALFLVMSAFSAALSL 546

>RS3A_PICTO (Q6KYU3) 30S ribosomal protein S3Ae|
          Length = 209

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 21/85 (24%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
 Frame = +3

Query: 90  APASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISD 269
           +PA+ P+  +G+K++  V+   ++ G   K++   +   +    KR T ++ G  + +SD
Sbjct: 35  SPAADPSLMIGRKVEVPVS---DFTGNFRKSSTMVIFRVKECTGKRCTTEFIG--HKVSD 89

Query: 270 D--QQDITRGKGIVDSLFQAPTGDG 338
           D  ++ + R K  +D +  + T DG
Sbjct: 90  DTIRRMVRRRKERIDIIMPSKTKDG 114

>PYR1_HUMAN (P27708) CAD protein [Includes: Glutamine-dependent|
            carbamoyl-phosphate synthase (EC 6.3.5.5); Aspartate
            carbamoyltransferase (EC 2.1.3.2); Dihydroorotase (EC
            3.5.2.3)]
          Length = 2225

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
 Frame = -3

Query: 470  LERWTTSLSMKAGAM*KPPMVLSXVVLPQALADVLVGAEDGLVGAVARGRLEERVHDA-L 294
            LER+   LS  A    + P+V+S  +      DV   A DG+V A+A   + E V +A +
Sbjct: 1107 LERF---LSSAAAVSKEHPVVISKFIQEAKEIDVDAVASDGVVAAIA---ISEHVENAGV 1160

Query: 293  PSGDVLLVV--GDIVRKT 246
             SGD  LV    DI  KT
Sbjct: 1161 HSGDATLVTPPQDITAKT 1178

>RT107_YEAST (P38850) Regulator of Ty1 transposition protein 107|
          Length = 1070

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +3

Query: 168 KSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAP 326
           K  + +   +++ E++  K++TDK+  L   +SD+   I   K  V+S +  P
Sbjct: 688 KQGEESTGKLISTEDVTSKKDTDKFSHLFEGLSDNDDHINDEKPAVNSKYTTP 740

>CASZ1_MOUSE (Q9CWL2) Castor homolog 1 zinc finger protein (Castor-related|
           protein) (Fragment)
          Length = 255

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 36  QGRPSSTEMAAAFSSTVGAPASTPTNFLGKKLKKQV 143
           QG PS     +  +   G+PA  P+ FLGK +K  V
Sbjct: 52  QGNPSLESFLSIKTEAEGSPAGEPSPFLGKAVKALV 87

>PTN13_MOUSE (Q64512) Tyrosine-protein phosphatase non-receptor type 13 (EC|
           3.1.3.48) (Protein tyrosine phosphatase PTP-BL)
           (Protein-tyrosine phosphatase RIP) (protein tyrosine
           phosphatase DPZPTP) (PTP36)
          Length = 2453

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +3

Query: 258 DISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRK 392
           D S   +D  RGKG+            THEA LS   +V++GL K
Sbjct: 195 DRSQAIRDRLRGKGLPTGRSSTSDALDTHEAPLSQQTFVNKGLSK 239

>DHOM_HELPJ (Q9ZL20) Homoserine dehydrogenase (EC 1.1.1.3) (HDH)|
          Length = 421

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 225 RNTDKWKGLAYDISDDQQDITRGKGI 302
           R+  K KG A++ISDD + +   KGI
Sbjct: 46  RDVKKHKGYAFEISDDLESVIEDKGI 71

>GRN_RAT (P23785) Granulins precursor [Contains: Acrogranin; Granulin-1|
           (Granulin G); Granulin-2 (Granulin F); Granulin-3
           (Granulin B) (Epithelin-2); Granulin-4 (Granulin A)
           (Epithelin-1); Granulin-5 (Granulin C); Granulin-6
           (Granulin D); Granulin-7 (Gran
          Length = 588

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 7/37 (18%)
 Frame = +3

Query: 381 GLRKYDXRQ----HHGRL---LHRSCFHGQACCPSLQ 470
           GL K   RQ     HG +    H SC  GQ CCPSL+
Sbjct: 422 GLEKMPVRQTTLLQHGDIGCDQHTSCPVGQTCCPSLK 458


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,563,957
Number of Sequences: 219361
Number of extensions: 1431688
Number of successful extensions: 5309
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 5079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5301
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4373119116
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)