ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal30n04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 1023 bits (516), Expect = 0.0 Identities = 539/544 (99%), Gaps = 2/544 (0%) Strand = Plus / Plus Query: 4 ccagcacagccgcgcgcatccaccgttgctagcaaggtcgaccaagcagcacagagatgg 63 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 87 ccagcacagccgcgcgcatccaccgttg-tagcaaggtcgaccaagcagcacagagatgg 145 Query: 64 ctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcggga 123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 146 ctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcggga 205 Query: 124 agaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaaggcca 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 206 agaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaaggcca 265 Query: 184 acaggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgacaagtgga 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 266 acaggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgacaagtgga 325 Query: 244 agggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggcatcg 303 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 326 agggtcttgctaccgatatctccgacgaccagcaggacatcaccagagggaagggcatcg 385 Query: 304 tggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagctcct 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 386 tggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagctcct 445 Query: 364 acgagtacgtcagccagggcctgcggaagtacgacnttcgacaacaccatgggaggcttc 423 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 446 acgagtacgtcagccagggcctgcggaagtacgac-ttcgacaacaccatgggaggcttc 504 Query: 424 tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 483 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 505 tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 564 Query: 484 ctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaa 543 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 565 ctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaa 624 Query: 544 tcat 547 |||| Sbjct: 625 tcat 628
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 930 bits (469), Expect = 0.0 Identities = 527/544 (96%), Gaps = 3/544 (0%) Strand = Plus / Plus Query: 2 caccagcacagccgcgcgcatccaccgttgctagcaaggtcgaccaagcagcacagagat 61 ||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||| Sbjct: 6 caccagcacagccgcgc--atccaccgctgctagcaaggtcgagcaagcagcacagagat 63 Query: 62 ggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcgg 121 ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct: 64 ggctgctgccttctcctccaccgtcggtgccccggcttctacgccgaccaacttcctcgg 123 Query: 122 gaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaaggc 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 124 gaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctccaaggc 183 Query: 182 caacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgacaagtg 241 |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 184 caacaggttcacggtcatggcagcggaaaacatcgacgagaagaggaacaccgacaagtg 243 Query: 242 gaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggcat 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 244 gaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggcat 303 Query: 302 cgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagctc 361 ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 304 cgtggactccctcttccaggcgcccactggcgacggcacccacgaggccgtcctcagctc 363 Query: 362 ctacgagtacgtcagccagggcctgcggaagtacgacnttcgacaacaccatgggaggct 421 |||||||||||||||||||| || |||||||||| |||||||||||||||||||||| Sbjct: 364 atacgagtacgtcagccagggactcaagaagtacgac-ttcgacaacaccatgggaggct 422 Query: 422 tctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatga 481 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 423 tctacatcgctcctgctttcatggacaagcttgttgtccatctctccaagaacttcatga 482 Query: 482 ccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaa 541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 483 ccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaa 542 Query: 542 aatc 545 |||| Sbjct: 543 aatc 546
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 769 bits (388), Expect = 0.0 Identities = 401/404 (99%), Gaps = 1/404 (0%) Strand = Plus / Plus Query: 95 ggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgt 154 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5518 ggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgt 5577 Query: 155 gaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcggagaacat 214 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5578 gaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcggagaacat 5637 Query: 215 cgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacgacca 274 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5638 cgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacgacca 5697 Query: 275 gcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacgggcga 334 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 5698 gcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacggggca 5757 Query: 335 cggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcggaagta 394 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5758 cggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcggaagta 5817 Query: 395 cgacnttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttg 454 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5818 cgac-ttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttg 5876 Query: 455 ttgtccatctctccaaaaacttcatgaccctgcccaacatcaag 498 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5877 ttgtccatctctccaaaaacttcatgaccctgcccaacatcaag 5920 Score = 291 bits (147), Expect = 1e-75 Identities = 259/295 (87%), Gaps = 1/295 (0%) Strand = Plus / Plus Query: 239 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 298 |||||||||||| || ||||| ||||| |||||||||||||||||||| | ||||| || Sbjct: 2939 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 2998 Query: 299 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 358 |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| || Sbjct: 2999 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 3058 Query: 359 ctcctacgagtacgtcagccagggcctgcggaagtacgacnttcgacaacaccatgggag 418 ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| | Sbjct: 3059 ctcctacgagtacatcagccagggcctgcggaagtacgac-ttcgacaacaccatggacg 3117 Query: 419 gcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttca 478 | | |||||||| || || |||||||||||||| | ||||| ||| |||| ||||||| Sbjct: 3118 ggctgtacatcgcgccggcattcatggacaagctcatcgtccacctcgccaagaacttca 3177 Query: 479 tgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaaggg 533 |||| || |||||||||||| | || |||||| |||||||||||||||||||||| Sbjct: 3178 tgacactccccaacatcaaggttcctctcatcctgggtatctggggaggcaaggg 3232 Score = 172 bits (87), Expect = 8e-40 Identities = 94/95 (98%), Gaps = 1/95 (1%) Strand = Plus / Plus Query: 2 caccagcacagccgcgcgcatccaccgttgctagcaaggtcgaccaagcagcacagagat 61 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 5305 caccagcacagccgcgcgcatccaccgttg-tagcaaggtcgaccaagcagcacagagat 5363 Query: 62 ggctgctgccttctcctccaccgtcggggctccgg 96 ||||||||||||||||||||||||||||||||||| Sbjct: 5364 ggctgctgccttctcctccaccgtcggggctccgg 5398 Score = 101 bits (51), Expect = 2e-18 Identities = 51/51 (100%) Strand = Plus / Plus Query: 497 agatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcat 547 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6070 agatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcat 6120
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 702 bits (354), Expect = 0.0 Identities = 370/374 (98%), Gaps = 1/374 (0%) Strand = Plus / Plus Query: 174 tccaaggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacacc 233 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 tccaaggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacacc 60 Query: 234 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 293 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 61 gacaagtggaagggtcttgctaccgatatctccgacgaccagcaggacatcaccagaggg 120 Query: 294 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 180 Query: 354 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacnttcgacaacaccat 413 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 181 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgac-ttcgacaacaccat 239 Query: 414 gggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaa 473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 240 gggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaa 299 Query: 474 cttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaaggg 533 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 300 cttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaaggg 359 Query: 534 tcaaggaaaatcat 547 |||||||||||||| Sbjct: 360 tcaaggaaaatcat 373
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 428 bits (216), Expect = e-117 Identities = 289/312 (92%), Gaps = 1/312 (0%) Strand = Plus / Plus Query: 234 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 293 |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || Sbjct: 257 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 316 Query: 294 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 353 ||||| ||||| ||||| || ||||||||||||| |||||| |||||||||||||||||| Sbjct: 317 aagggtatcgtcgactccctgttccaggcgcccatgggcgatggcacccacgaggccgtc 376 Query: 354 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacnttcgacaacaccat 413 |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| Sbjct: 377 ctcagctcctacgagtacgtcagccagggcctcaagaagtacgac-ttcgacaacaccat 435 Query: 414 gggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaa 473 |||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| || Sbjct: 436 gggaggcttctacatcgccccggctttcatggacaagctcgttgtccacctctccaagaa 495 Query: 474 cttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaaggg 533 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 496 cttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggaaaggg 555 Query: 534 tcaaggaaaatc 545 ||| || ||||| Sbjct: 556 tcaggggaaatc 567 Score = 228 bits (115), Expect = 2e-56 Identities = 139/147 (94%) Strand = Plus / Plus Query: 56 agagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaactt 115 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||| Sbjct: 76 agagatggctgctgccttctcctccaccgtcggagctccggcttccacgccgaccagctt 135 Query: 116 cctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctc 175 |||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 136 cctcggcaacaagctcaagaagcaggtgacctcggcagtgaactaccatggcaagagctt 195 Query: 176 caaggccaacaggttcacagtcatggc 202 |||||||||||||||||| |||||||| Sbjct: 196 caaggccaacaggttcaccgtcatggc 222
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 408 bits (206), Expect = e-111 Identities = 286/312 (91%), Gaps = 1/312 (0%) Strand = Plus / Plus Query: 234 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 293 |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || Sbjct: 247 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 306 Query: 294 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 353 ||||| ||||| ||||| | ||||||||||||| |||||| || ||||||||||||||| Sbjct: 307 aagggtatcgtcgactccttgttccaggcgcccatgggcgatggnacccacgaggccgtc 366 Query: 354 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacnttcgacaacaccat 413 |||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||| Sbjct: 367 ctcagctcntacgagtacgtcagccagggcctcaagaagtacgac-ttcgacaacaccat 425 Query: 414 gggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaa 473 |||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| || Sbjct: 426 gggaggcttctacatcgccccggctttcatggacaagctcgttgtccacctctccaagaa 485 Query: 474 cttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaaggg 533 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 486 cttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggaaaggg 545 Query: 534 tcaaggaaaatc 545 ||| || ||||| Sbjct: 546 tcaggggaaatc 557 Score = 222 bits (112), Expect = 9e-55 Identities = 138/147 (93%) Strand = Plus / Plus Query: 56 agagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaactt 115 ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||| ||| Sbjct: 66 agagatggctgctgccttctcctccaccgtcggagctccggcttccacgccnaccagctt 125 Query: 116 cctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctc 175 |||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 126 cctcggcaacaagctcaagaagcaggtgacctcggcagtgaactaccatggcaagagctt 185 Query: 176 caaggccaacaggttcacagtcatggc 202 |||||||||||||||||| |||||||| Sbjct: 186 caaggccaacaggttcaccgtcatggc 212
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 365 bits (184), Expect = 1e-97 Identities = 281/312 (90%), Gaps = 1/312 (0%) Strand = Plus / Plus Query: 234 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 293 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 204 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 263 Query: 294 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 353 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 264 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 323 Query: 354 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacnttcgacaacaccat 413 |||||||||||||||||| |||||||||| || | | ||||||| |||||||||||||| Sbjct: 324 ctcagctcctacgagtacctcagccagggtctcagaacgtacgac-ttcgacaacaccat 382 Query: 414 gggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaa 473 |||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| || Sbjct: 383 gggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaa 442 Query: 474 cttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaaggg 533 |||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 443 cttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaaggg 502 Query: 534 tcaaggaaaatc 545 ||| |||||||| Sbjct: 503 tcagggaaaatc 514 Score = 172 bits (87), Expect = 8e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 58 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 117 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 25 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 84 Query: 118 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 177 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 85 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 144 Query: 178 aggccaacaggttca 192 | ||||||||||| Sbjct: 145 acatcaacaggttca 159
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 365 bits (184), Expect = 1e-97 Identities = 281/312 (90%), Gaps = 1/312 (0%) Strand = Plus / Plus Query: 234 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 293 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 241 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 300 Query: 294 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 353 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 301 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 360 Query: 354 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacnttcgacaacaccat 413 |||||||||||||||||| |||||||||| || | | ||||||| |||||||||||||| Sbjct: 361 ctcagctcctacgagtacctcagccagggtctcagaacgtacgac-ttcgacaacaccat 419 Query: 414 gggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaa 473 |||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| || Sbjct: 420 gggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaa 479 Query: 474 cttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaaggg 533 |||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 480 cttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaaggg 539 Query: 534 tcaaggaaaatc 545 ||| |||||||| Sbjct: 540 tcagggaaaatc 551 Score = 172 bits (87), Expect = 8e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 58 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 117 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 62 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 121 Query: 118 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 177 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 122 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 181 Query: 178 aggccaacaggttca 192 | ||||||||||| Sbjct: 182 acatcaacaggttca 196
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 365 bits (184), Expect = 1e-97 Identities = 281/312 (90%), Gaps = 1/312 (0%) Strand = Plus / Plus Query: 234 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 293 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299 Query: 294 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 353 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 300 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 359 Query: 354 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacnttcgacaacaccat 413 |||||||||||||||||| |||||||||| || | | ||||||| |||||||||||||| Sbjct: 360 ctcagctcctacgagtacctcagccagggtctcagaacgtacgac-ttcgacaacaccat 418 Query: 414 gggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaa 473 |||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| || Sbjct: 419 gggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaa 478 Query: 474 cttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaaggg 533 |||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 479 cttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaaggg 538 Query: 534 tcaaggaaaatc 545 ||| |||||||| Sbjct: 539 tcagggaaaatc 550 Score = 172 bits (87), Expect = 8e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 58 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 117 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 61 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 120 Query: 118 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 177 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 121 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 180 Query: 178 aggccaacaggttca 192 | ||||||||||| Sbjct: 181 acatcaacaggttca 195
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 365 bits (184), Expect = 1e-97 Identities = 281/312 (90%), Gaps = 1/312 (0%) Strand = Plus / Plus Query: 234 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 293 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 24 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 83 Query: 294 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 353 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 84 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 143 Query: 354 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacnttcgacaacaccat 413 |||||||||||||||||| |||||||||| || | | ||||||| |||||||||||||| Sbjct: 144 ctcagctcctacgagtacctcagccagggtctcagaacgtacgac-ttcgacaacaccat 202 Query: 414 gggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaa 473 |||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| || Sbjct: 203 gggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaa 262 Query: 474 cttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaaggg 533 |||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 263 cttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaaggg 322 Query: 534 tcaaggaaaatc 545 ||| |||||||| Sbjct: 323 tcagggaaaatc 334
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 365 bits (184), Expect = 1e-97 Identities = 281/312 (90%), Gaps = 1/312 (0%) Strand = Plus / Plus Query: 234 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 293 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 245 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 304 Query: 294 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 353 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 305 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 364 Query: 354 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacnttcgacaacaccat 413 |||||||||||||||||| |||||||||| || | | ||||||| |||||||||||||| Sbjct: 365 ctcagctcctacgagtacctcagccagggtctcagaacgtacgac-ttcgacaacaccat 423 Query: 414 gggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaa 473 |||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| || Sbjct: 424 gggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaa 483 Query: 474 cttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaaggg 533 |||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 484 cttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaaggg 543 Query: 534 tcaaggaaaatc 545 ||| |||||||| Sbjct: 544 tcagggaaaatc 555 Score = 165 bits (83), Expect = 2e-37 Identities = 122/135 (90%) Strand = Plus / Plus Query: 58 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 117 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 66 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 125 Query: 118 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 177 | ||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 126 tggggaagaagctgaaaaagcaggtgacatcggcggtgaactaccatggcaagagctcca 185 Query: 178 aggccaacaggttca 192 | ||||||||||| Sbjct: 186 acatcaacaggttca 200
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 365 bits (184), Expect = 1e-97 Identities = 281/312 (90%), Gaps = 1/312 (0%) Strand = Plus / Plus Query: 234 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 293 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 239 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 298 Query: 294 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 353 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 299 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 358 Query: 354 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacnttcgacaacaccat 413 |||||||||||||||||| |||||||||| || | | ||||||| |||||||||||||| Sbjct: 359 ctcagctcctacgagtacctcagccagggtctcagaacgtacgac-ttcgacaacaccat 417 Query: 414 gggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaa 473 |||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| || Sbjct: 418 gggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaa 477 Query: 474 cttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaaggg 533 |||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 478 cttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaaggg 537 Query: 534 tcaaggaaaatc 545 ||| |||||||| Sbjct: 538 tcagggaaaatc 549 Score = 172 bits (87), Expect = 8e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 58 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 117 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 60 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 119 Query: 118 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 177 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 120 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 179 Query: 178 aggccaacaggttca 192 | ||||||||||| Sbjct: 180 acatcaacaggttca 194
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 357 bits (180), Expect = 2e-95 Identities = 280/312 (89%), Gaps = 1/312 (0%) Strand = Plus / Plus Query: 234 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 293 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 212 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 271 Query: 294 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 353 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 272 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 331 Query: 354 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacnttcgacaacaccat 413 |||||||||||||||||| |||||||||| || | | ||||||| |||||||||||||| Sbjct: 332 ctcagctcctacgagtacctcagccagggtctcagaacgtacgac-ttcgacaacaccat 390 Query: 414 gggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaa 473 |||||||||||||||||| ||| |||||||||||||||| || ||||| ||||||| || Sbjct: 391 gggaggcttctacatcgccccttctttcatggacaagctcgtcgtccacatctccaagaa 450 Query: 474 cttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaaggg 533 |||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 451 cttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaaggg 510 Query: 534 tcaaggaaaatc 545 ||| |||||||| Sbjct: 511 tcagggaaaatc 522 Score = 172 bits (87), Expect = 8e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 58 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 117 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 33 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 92 Query: 118 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 177 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 93 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 152 Query: 178 aggccaacaggttca 192 | ||||||||||| Sbjct: 153 acatcaacaggttca 167
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 357 bits (180), Expect = 2e-95 Identities = 280/312 (89%), Gaps = 1/312 (0%) Strand = Plus / Plus Query: 234 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 293 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 252 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 311 Query: 294 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 353 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 312 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 371 Query: 354 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacnttcgacaacaccat 413 |||||||||||||||||| |||||||||| || | | ||||||| |||||||||||||| Sbjct: 372 ctcagctcctacgagtacctcagccagggtctcagaacgtacgac-ttcgacaacaccat 430 Query: 414 gggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaa 473 |||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| || Sbjct: 431 gggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaa 490 Query: 474 cttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaaggg 533 |||||||||||| |||||||||||| ||||||||| | |||||||||||||||||||||| Sbjct: 491 cttcatgaccctccccaacatcaaggtcccactcaccctgggtatctggggaggcaaggg 550 Query: 534 tcaaggaaaatc 545 ||| |||||||| Sbjct: 551 tcagggaaaatc 562 Score = 172 bits (87), Expect = 8e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 58 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 117 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 73 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 132 Query: 118 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 177 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 133 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 192 Query: 178 aggccaacaggttca 192 | ||||||||||| Sbjct: 193 acatcaacaggttca 207
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 299 bits (151), Expect = 5e-78 Identities = 260/295 (88%), Gaps = 1/295 (0%) Strand = Plus / Plus Query: 239 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 298 |||||||||||| || ||||| |||||||| ||||||||||||||||| || ||||| || Sbjct: 217 gtggaagggtctcgcttacgacatctccgatgaccagcaggacatcacgagggggaaagg 276 Query: 299 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 358 |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| || Sbjct: 277 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctgag 336 Query: 359 ctcctacgagtacgtcagccagggcctgcggaagtacgacnttcgacaacaccatgggag 418 ||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||| | Sbjct: 337 ctcctacgagtacatcagccagggcctgcgcaagtacgac-ttcgacaacaccatggacg 395 Query: 419 gcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttca 478 | | |||||||| || || |||||||||||||| | ||||| ||| |||| ||||||| Sbjct: 396 ggctgtacatcgccccggcgttcatggacaagctcatcgtccacctcgccaagaacttca 455 Query: 479 tgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaaggg 533 |||| || |||||||||||| |||| |||||| |||||||||||||||||||||| Sbjct: 456 tgacactccccaacatcaaggtccctctcatcctgggtatctggggaggcaaggg 510 Score = 77.8 bits (39), Expect = 3e-11 Identities = 72/83 (86%) Strand = Plus / Plus Query: 59 gatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcct 118 ||||||| |||| ||||| |||||||| || |||||||| || || ||||||| |||||| Sbjct: 25 gatggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccaccttcct 84 Query: 119 cgggaagaagctcaagaagcagg 141 |||||||||| | |||||||||| Sbjct: 85 cgggaagaaggtgaagaagcagg 107
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 291 bits (147), Expect = 1e-75 Identities = 259/295 (87%), Gaps = 1/295 (0%) Strand = Plus / Plus Query: 239 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 298 |||||||||||| || ||||| ||||| |||||||||||||||||||| | ||||| || Sbjct: 370 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 429 Query: 299 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 358 |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| || Sbjct: 430 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 489 Query: 359 ctcctacgagtacgtcagccagggcctgcggaagtacgacnttcgacaacaccatgggag 418 ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| | Sbjct: 490 ctcctacgagtacatcagccagggcctgcggaagtacgac-ttcgacaacaccatggacg 548 Query: 419 gcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttca 478 | | |||||||| || || |||||||||||||| | ||||| ||| |||| ||||||| Sbjct: 549 ggctgtacatcgcgccggcattcatggacaagctcatcgtccacctcgccaagaacttca 608 Query: 479 tgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaaggg 533 |||| || |||||||||||| | || |||||| |||||||||||||||||||||| Sbjct: 609 tgacactccccaacatcaaggttcctctcatcctgggtatctggggaggcaaggg 663
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 230 bits (116), Expect = 4e-57 Identities = 171/188 (90%), Gaps = 1/188 (0%) Strand = Plus / Plus Query: 358 gctcctacgagtacgtcagccagggcctgcggaagtacgacnttcgacaacaccatggga 417 |||||||||||||| |||||||||| || | | ||||||| |||||||||||||||||| Sbjct: 327 gctcctacgagtacctcagccagggtctcagaacgtacgac-ttcgacaacaccatggga 385 Query: 418 ggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttc 477 |||||||||||||| |||||||||||||||||||| || ||||| ||||||| |||||| Sbjct: 386 ggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaacttc 445 Query: 478 atgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaa 537 |||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 446 atgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggtcag 505 Query: 538 ggaaaatc 545 |||||||| Sbjct: 506 ggaaaatc 513 Score = 172 bits (87), Expect = 8e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 58 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 117 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 61 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 120 Query: 118 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 177 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 121 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 180 Query: 178 aggccaacaggttca 192 | ||||||||||| Sbjct: 181 acatcaacaggttca 195 Score = 89.7 bits (45), Expect = 9e-15 Identities = 78/89 (87%) Strand = Plus / Plus Query: 234 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 293 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299 Query: 294 aagggcatcgtggactcgctcttccaggc 322 ||||| |||| ||||| || |||||||| Sbjct: 300 aagggtttcgtcgactcccttttccaggc 328
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 210 bits (106), Expect = 4e-51 Identities = 136/146 (93%) Strand = Plus / Minus Query: 400 ttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgtc 459 |||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||| Sbjct: 109428 ttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagctcgtcgtc 109369 Query: 460 catctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatc 519 || ||||||| |||||||||||||| |||||||||||| ||||||||||| |||||||| Sbjct: 109368 cacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcctgggtatc 109309 Query: 520 tggggaggcaagggtcaaggaaaatc 545 ||||||||||||||||| |||||||| Sbjct: 109308 tggggaggcaagggtcagggaaaatc 109283 Score = 176 bits (89), Expect = 5e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 234 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 293 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 109706 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 109647 Query: 294 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 353 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 109646 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 109587 Query: 354 ctcagctcctacgagtacgtcagccaggg 382 |||||||||||||||||| |||||||||| Sbjct: 109586 ctcagctcctacgagtacctcagccaggg 109558 Score = 125 bits (63), Expect = 2e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 239 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 298 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 113205 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 113146 Query: 299 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 349 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 113145 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 113095 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 105 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 164 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 109838 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 109779 Query: 165 ggcaagagctccaaggccaacaggttca 192 |||||||||||||| ||||||||||| Sbjct: 109778 ggcaagagctccaacatcaacaggttca 109751 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 58 agatggctgctgccttctcctccaccgtcggggctccgg 96 |||||||||||||||||||||||||||| || ||||||| Sbjct: 109984 agatggctgctgccttctcctccaccgttggagctccgg 109946
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 210 bits (106), Expect = 4e-51 Identities = 136/146 (93%) Strand = Plus / Minus Query: 400 ttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgtc 459 |||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||| Sbjct: 31305 ttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagctcgtcgtc 31246 Query: 460 catctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatc 519 || ||||||| |||||||||||||| |||||||||||| ||||||||||| |||||||| Sbjct: 31245 cacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcctgggtatc 31186 Query: 520 tggggaggcaagggtcaaggaaaatc 545 ||||||||||||||||| |||||||| Sbjct: 31185 tggggaggcaagggtcagggaaaatc 31160 Score = 176 bits (89), Expect = 5e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 234 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 293 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 31583 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 31524 Query: 294 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 353 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 31523 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 31464 Query: 354 ctcagctcctacgagtacgtcagccaggg 382 |||||||||||||||||| |||||||||| Sbjct: 31463 ctcagctcctacgagtacctcagccaggg 31435 Score = 125 bits (63), Expect = 2e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 239 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 298 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 35082 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 35023 Query: 299 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 349 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 35022 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 34972 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 105 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 164 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 31715 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 31656 Query: 165 ggcaagagctccaaggccaacaggttca 192 |||||||||||||| ||||||||||| Sbjct: 31655 ggcaagagctccaacatcaacaggttca 31628 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 58 agatggctgctgccttctcctccaccgtcggggctccgg 96 |||||||||||||||||||||||||||| || ||||||| Sbjct: 31861 agatggctgctgccttctcctccaccgttggagctccgg 31823
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 210 bits (106), Expect = 4e-51 Identities = 136/146 (93%) Strand = Plus / Minus Query: 400 ttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgtc 459 |||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||| Sbjct: 28304567 ttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagctcgtcgtc 28304508 Query: 460 catctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatc 519 || ||||||| |||||||||||||| |||||||||||| ||||||||||| |||||||| Sbjct: 28304507 cacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcctgggtatc 28304448 Query: 520 tggggaggcaagggtcaaggaaaatc 545 ||||||||||||||||| |||||||| Sbjct: 28304447 tggggaggcaagggtcagggaaaatc 28304422 Score = 176 bits (89), Expect = 5e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 234 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 293 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 28304845 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28304786 Query: 294 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 353 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 28304785 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28304726 Query: 354 ctcagctcctacgagtacgtcagccaggg 382 |||||||||||||||||| |||||||||| Sbjct: 28304725 ctcagctcctacgagtacctcagccaggg 28304697 Score = 125 bits (63), Expect = 2e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 239 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 298 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 28308344 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28308285 Query: 299 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 349 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 28308284 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28308234 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 105 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 164 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 28304977 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 28304918 Query: 165 ggcaagagctccaaggccaacaggttca 192 |||||||||||||| ||||||||||| Sbjct: 28304917 ggcaagagctccaacatcaacaggttca 28304890 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 58 agatggctgctgccttctcctccaccgtcggggctccgg 96 |||||||||||||||||||||||||||| || ||||||| Sbjct: 28305123 agatggctgctgccttctcctccaccgttggagctccgg 28305085
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 210 bits (106), Expect = 4e-51 Identities = 136/146 (93%) Strand = Plus / Minus Query: 400 ttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgtc 459 |||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||| Sbjct: 28287016 ttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagctcgtcgtc 28286957 Query: 460 catctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatc 519 || ||||||| |||||||||||||| |||||||||||| ||||||||||| |||||||| Sbjct: 28286956 cacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcctgggtatc 28286897 Query: 520 tggggaggcaagggtcaaggaaaatc 545 ||||||||||||||||| |||||||| Sbjct: 28286896 tggggaggcaagggtcagggaaaatc 28286871 Score = 176 bits (89), Expect = 5e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 234 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 293 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 28287294 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28287235 Query: 294 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 353 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 28287234 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28287175 Query: 354 ctcagctcctacgagtacgtcagccaggg 382 |||||||||||||||||| |||||||||| Sbjct: 28287174 ctcagctcctacgagtacctcagccaggg 28287146 Score = 125 bits (63), Expect = 2e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 239 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 298 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 28290793 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28290734 Query: 299 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 349 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 28290733 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28290683 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 105 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 164 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 28287426 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 28287367 Query: 165 ggcaagagctccaaggccaacaggttca 192 |||||||||||||| ||||||||||| Sbjct: 28287366 ggcaagagctccaacatcaacaggttca 28287339 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 58 agatggctgctgccttctcctccaccgtcggggctccgg 96 |||||||||||||||||||||||||||| || ||||||| Sbjct: 28287572 agatggctgctgccttctcctccaccgttggagctccgg 28287534
>gb|U35111.1|NTU35111 Nicotiana tabacum rubisco activase precursor (Rca) mRNA, complete cds Length = 1674 Score = 141 bits (71), Expect = 3e-30 Identities = 113/127 (88%) Strand = Plus / Plus Query: 421 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 480 |||||||||||||||||||||||||||||||||||||| || || |||| |||||| || Sbjct: 456 ttctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttg 515 Query: 481 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 540 | |||||||||||||| | ||||| ||||||||||||||||||||||| |||||||| Sbjct: 516 aaattgcccaacatcaaggttccacttatcttgggtatctggggaggcaaaggtcaaggc 575 Query: 541 aaatcat 547 ||||||| Sbjct: 576 aaatcat 582
>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1 mRNA, complete cds Length = 1559 Score = 139 bits (70), Expect = 1e-29 Identities = 248/306 (81%), Gaps = 1/306 (0%) Strand = Plus / Plus Query: 240 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggc 299 |||||||||||||| || ||||||||||| ||||| || ||||| ||||||||||| || Sbjct: 280 tggaagggtcttgcttatgatatctccgatgaccaacaagacattaccagagggaaaggt 339 Query: 300 atcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagc 359 || || ||||| | ||||| || |||| | ||| || || ||| | || ||| | ||| Sbjct: 340 atggtcgactcattgttccaagctcccatgaacgatggtactcactatgctgtcatgagc 399 Query: 360 tcctacgagtacgtcagccagggcctgcggaagtacgacnttcgacaacaccatgggagg 419 ||||| |||||| | ||||| ||||| || | |||||| || ||||||| ||||| || Sbjct: 400 tcctatgagtacattagccaaggccttcgcacatacgac-ttggacaacaacatggatgg 458 Query: 420 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 479 |||||||| || || ||||||||||||||||||||||| || || |||| |||| ||| Sbjct: 459 attctacattgccccagctttcatggacaagcttgttgttcacatcaccaagaactacat 518 Query: 480 gaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagg 539 |||||| || ||||| ||| | || || ||||||||||| ||||||||||| |||||||| Sbjct: 519 gacccttcctaacattaaggttcctcttatcttgggtatttggggaggcaaaggtcaagg 578 Query: 540 aaaatc 545 |||||| Sbjct: 579 aaaatc 584
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 133 bits (67), Expect = 7e-28 Identities = 130/151 (86%) Strand = Plus / Plus Query: 234 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 293 |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272 Query: 294 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 353 |||||| |||| ||| |||||||||||||| | ||| ||||||||||||| ||||| Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatgggggacggcacccacgtcgccgtg 332 Query: 354 ctcagctcctacgagtacgtcagccagggcc 384 |||||||||||||| ||| |||||||||||| Sbjct: 333 ctcagctcctacgactacatcagccagggcc 363 Score = 117 bits (59), Expect = 4e-23 Identities = 95/107 (88%) Strand = Plus / Plus Query: 439 ttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaag 498 |||||||||||||| || ||||| |||||||| ||||||||||||||||| ||||||||| Sbjct: 417 ttcatggacaagctcgtcgtccacctctccaagaacttcatgaccctgccaaacatcaag 476 Query: 499 atcccactcatcttgggtatctggggaggcaagggtcaaggaaaatc 545 | || |||||| ||||||||||||||||||| || || |||||||| Sbjct: 477 gttcccctcatcctgggtatctggggaggcaaaggccagggaaaatc 523 Score = 91.7 bits (46), Expect = 2e-15 Identities = 107/127 (84%), Gaps = 9/127 (7%) Strand = Plus / Plus Query: 60 atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaa------c 113 ||||| || |||||||||||||||||||| |||||||| || || ||||||| | Sbjct: 21 atggcggccgccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagc 80 Query: 114 ttcctcgggaagaagctcaagaagc---aggtgacctcggccgtgaactaccatggcaag 170 |||||||||||||||||||| |||| ||||| || ||||||||| ||||||||||||| Sbjct: 81 ttcctcgggaagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaag 140 Query: 171 agctcca 177 ||||||| Sbjct: 141 agctcca 147
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 123 bits (62), Expect = 6e-25 Identities = 107/122 (87%) Strand = Plus / Plus Query: 424 tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 483 ||||||||||| || ||||||||||||||||| || || || |||| |||||||||| | Sbjct: 388 tacatcgctccggccttcatggacaagcttgtcgttcacatcaccaagaacttcatgaac 447 Query: 484 ctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaa 543 |||||||||||||||| || ||||| |||||||||||||||||||| |||||||| ||| Sbjct: 448 ttgcccaacatcaagattcctctcattttgggtatctggggaggcaaaggtcaagggaaa 507 Query: 544 tc 545 || Sbjct: 508 tc 509 Score = 111 bits (56), Expect = 2e-21 Identities = 95/108 (87%) Strand = Plus / Plus Query: 270 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 329 |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| | Sbjct: 235 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 294 Query: 330 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagc 377 |||||||| |||||| | ||||||| ||||||||||||||| ||||| Sbjct: 295 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagc 342
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 123 bits (62), Expect = 6e-25 Identities = 107/122 (87%) Strand = Plus / Plus Query: 424 tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 483 ||||||||||| || ||||||||||||||||| || || || |||| |||||||||| | Sbjct: 251 tacatcgctccggccttcatggacaagcttgtcgttcacatcaccaagaacttcatgaac 310 Query: 484 ctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaa 543 |||||||||||||||| || ||||| |||||||||||||||||||| |||||||| ||| Sbjct: 311 ttgcccaacatcaagattcctctcattttgggtatctggggaggcaaaggtcaagggaaa 370 Query: 544 tc 545 || Sbjct: 371 tc 372 Score = 111 bits (56), Expect = 2e-21 Identities = 95/108 (87%) Strand = Plus / Plus Query: 270 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 329 |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| | Sbjct: 98 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 157 Query: 330 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagc 377 |||||||| |||||| | ||||||| ||||||||||||||| ||||| Sbjct: 158 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagc 205
>gb|AF037361.1|AF037361 Lycopersicon pennellii rubisco activase mRNA, complete cds Length = 1656 Score = 123 bits (62), Expect = 6e-25 Identities = 113/130 (86%) Strand = Plus / Plus Query: 418 ggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttc 477 ||||||||||| || ||||||||||||||||| |||||||| || || |||| |||||| Sbjct: 434 ggcttctacattgcccctgctttcatggacaaacttgttgttcacatcaccaagaacttc 493 Query: 478 atgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaa 537 |||| |||||||||||||| | ||||||||||||||| | ||||||||||| |||||| Sbjct: 494 ttgacattgcccaacatcaaggttccactcatcttgggtgtatggggaggcaaaggtcaa 553 Query: 538 ggaaaatcat 547 || ||||||| Sbjct: 554 ggtaaatcat 563
>emb|Z14980.1|NTRCAJQ4 N.tabacum Rca gene for ribulose bisphosphate carboxylase activase (pJQ4) Length = 1655 Score = 121 bits (61), Expect = 3e-24 Identities = 109/125 (87%) Strand = Plus / Plus Query: 421 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 480 ||||||||||||||| |||||||||||||||||||||| || || |||| |||||| || Sbjct: 426 ttctacatcgctccttctttcatggacaagcttgttgttcacatcaccaagaacttcttg 485 Query: 481 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 540 | |||||||||||||| | |||||||| |||||| ||||||||||||| |||||||| Sbjct: 486 aaattgcccaacatcaaggttccactcattttgggtgtctggggaggcaaaggtcaaggt 545 Query: 541 aaatc 545 ||||| Sbjct: 546 aaatc 550
>gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds Length = 1832 Score = 119 bits (60), Expect = 1e-23 Identities = 108/124 (87%) Strand = Plus / Plus Query: 422 tctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatga 481 ||||||| || ||||| || ||||||||||||||||| || || |||| |||||| ||| Sbjct: 630 tctacattgcccctgcctttatggacaagcttgttgttcacatcaccaagaacttcttga 689 Query: 482 ccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaa 541 | |||||||||||||||| ||||||||||||||| | |||||||||||||||||||| | Sbjct: 690 acttgcccaacatcaagataccactcatcttgggtgtttggggaggcaagggtcaaggta 749 Query: 542 aatc 545 |||| Sbjct: 750 aatc 753
>ref|NM_179989.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.2 mRNA, complete cds Length = 1815 Score = 117 bits (59), Expect = 4e-23 Identities = 162/195 (83%), Gaps = 1/195 (0%) Strand = Plus / Plus Query: 351 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacnttcgacaacac 410 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| || || ||||||| Sbjct: 496 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaac-ttggacaacat 554 Query: 411 catgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaa 470 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 555 gatggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaa 614 Query: 471 aaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaa 530 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 615 gaacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaa 674 Query: 531 gggtcaaggaaaatc 545 |||||||| ||||| Sbjct: 675 aggtcaaggtaaatc 689
>ref|NM_179990.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.3 mRNA, complete cds Length = 1928 Score = 117 bits (59), Expect = 4e-23 Identities = 162/195 (83%), Gaps = 1/195 (0%) Strand = Plus / Plus Query: 351 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacnttcgacaacac 410 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| || || ||||||| Sbjct: 496 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaac-ttggacaacat 554 Query: 411 catgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaa 470 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 555 gatggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaa 614 Query: 471 aaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaa 530 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 615 gaacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaa 674 Query: 531 gggtcaaggaaaatc 545 |||||||| ||||| Sbjct: 675 aggtcaaggtaaatc 689
>ref|NM_129531.2| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.1 mRNA, complete cds Length = 1833 Score = 117 bits (59), Expect = 4e-23 Identities = 162/195 (83%), Gaps = 1/195 (0%) Strand = Plus / Plus Query: 351 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacnttcgacaacac 410 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| || || ||||||| Sbjct: 525 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaac-ttggacaacat 583 Query: 411 catgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaa 470 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 584 gatggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaa 643 Query: 471 aaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaa 530 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 644 gaacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaa 703 Query: 531 gggtcaaggaaaatc 545 |||||||| ||||| Sbjct: 704 aggtcaaggtaaatc 718
>gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase alpha 2 mRNA, complete cds Length = 1433 Score = 117 bits (59), Expect = 4e-23 Identities = 122/143 (85%) Strand = Plus / Plus Query: 403 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccat 462 ||||||| ||||| || |||||||| |||||||| |||||||||||||||||||| || Sbjct: 256 gacaacaacatggatggtttctacattgctcctgcattcatggacaagcttgttgttcac 315 Query: 463 ctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctgg 522 || |||| ||||||||| |||| || ||||| ||| | || || ||||||||||| ||| Sbjct: 316 atcaccaagaacttcatgtccctccctaacattaaggttcctctaatcttgggtatttgg 375 Query: 523 ggaggcaagggtcaaggaaaatc 545 |||||||| |||||||||||||| Sbjct: 376 ggaggcaaaggtcaaggaaaatc 398
>gb|BT000710.1| Arabidopsis thaliana clone RAFL09-90-K08 (R19890) unknown protein (At2g39730) mRNA, complete cds Length = 1697 Score = 117 bits (59), Expect = 4e-23 Identities = 162/195 (83%), Gaps = 1/195 (0%) Strand = Plus / Plus Query: 351 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacnttcgacaacac 410 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| || || ||||||| Sbjct: 407 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaac-ttggacaacat 465 Query: 411 catgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaa 470 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 466 gatggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaa 525 Query: 471 aaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaa 530 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 526 gaacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaa 585 Query: 531 gggtcaaggaaaatc 545 |||||||| ||||| Sbjct: 586 aggtcaaggtaaatc 600
>gb|BT000613.1| Arabidopsis thaliana Rubsico activase (At2g39730/T5I7.3) mRNA, complete cds Length = 1425 Score = 117 bits (59), Expect = 4e-23 Identities = 162/195 (83%), Gaps = 1/195 (0%) Strand = Plus / Plus Query: 351 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacnttcgacaacac 410 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| || || ||||||| Sbjct: 322 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaac-ttggacaacat 380 Query: 411 catgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaa 470 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 381 gatggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaa 440 Query: 471 aaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaa 530 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 441 gaacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaa 500 Query: 531 gggtcaaggaaaatc 545 |||||||| ||||| Sbjct: 501 aggtcaaggtaaatc 515
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor, mRNA, partial cds Length = 1336 Score = 117 bits (59), Expect = 4e-23 Identities = 95/107 (88%) Strand = Plus / Plus Query: 439 ttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaag 498 |||||||||||||| || ||||| |||||||| ||||||||||||||||| ||||||||| Sbjct: 22 ttcatggacaagctcgtcgtccacctctccaagaacttcatgaccctgccaaacatcaag 81 Query: 499 atcccactcatcttgggtatctggggaggcaagggtcaaggaaaatc 545 | || |||||| ||||||||||||||||||| || || |||||||| Sbjct: 82 gttcccctcatcctgggtatctggggaggcaaaggccagggaaaatc 128
>gb|AY056108.1| Arabidopsis thaliana At2g39730/T5I7.3_ mRNA, complete cds Length = 1674 Score = 117 bits (59), Expect = 4e-23 Identities = 162/195 (83%), Gaps = 1/195 (0%) Strand = Plus / Plus Query: 351 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacnttcgacaacac 410 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| || || ||||||| Sbjct: 410 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaac-ttggacaacat 468 Query: 411 catgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaa 470 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 469 gatggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaa 528 Query: 471 aaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaa 530 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 529 gaacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaa 588 Query: 531 gggtcaaggaaaatc 545 |||||||| ||||| Sbjct: 589 aggtcaaggtaaatc 603
>gb|AY052703.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1693 Score = 117 bits (59), Expect = 4e-23 Identities = 162/195 (83%), Gaps = 1/195 (0%) Strand = Plus / Plus Query: 351 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacnttcgacaacac 410 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| || || ||||||| Sbjct: 399 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaac-ttggacaacat 457 Query: 411 catgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaa 470 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 458 gatggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaa 517 Query: 471 aaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaa 530 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 518 gaacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaa 577 Query: 531 gggtcaaggaaaatc 545 |||||||| ||||| Sbjct: 578 aggtcaaggtaaatc 592
>gb|AY052290.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1655 Score = 117 bits (59), Expect = 4e-23 Identities = 162/195 (83%), Gaps = 1/195 (0%) Strand = Plus / Plus Query: 351 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacnttcgacaacac 410 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| || || ||||||| Sbjct: 407 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaac-ttggacaacat 465 Query: 411 catgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaa 470 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 466 gatggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaa 525 Query: 471 aaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaa 530 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 526 gaacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaa 585 Query: 531 gggtcaaggaaaatc 545 |||||||| ||||| Sbjct: 586 aggtcaaggtaaatc 600
>gb|AF325049.2|AF325049 Arabidopsis thaliana At2g39730 (At2g39730/T5I7.3) mRNA, complete cds Length = 1674 Score = 117 bits (59), Expect = 4e-23 Identities = 162/195 (83%), Gaps = 1/195 (0%) Strand = Plus / Plus Query: 351 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacnttcgacaacac 410 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| || || ||||||| Sbjct: 410 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaac-ttggacaacat 468 Query: 411 catgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaa 470 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 469 gatggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaa 528 Query: 471 aaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaa 530 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 529 gaacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaa 588 Query: 531 gggtcaaggaaaatc 545 |||||||| ||||| Sbjct: 589 aggtcaaggtaaatc 603
>gb|AY088487.1| Arabidopsis thaliana clone 7114 mRNA, complete sequence Length = 1787 Score = 117 bits (59), Expect = 4e-23 Identities = 162/195 (83%), Gaps = 1/195 (0%) Strand = Plus / Plus Query: 351 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacnttcgacaacac 410 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| || || ||||||| Sbjct: 525 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaac-ttggacaacat 583 Query: 411 catgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaa 470 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 584 gatggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaa 643 Query: 471 aaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaa 530 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 644 gaacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaa 703 Query: 531 gggtcaaggaaaatc 545 |||||||| ||||| Sbjct: 704 aggtcaaggtaaatc 718
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 115 bits (58), Expect = 2e-22 Identities = 106/122 (86%) Strand = Plus / Plus Query: 424 tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 483 ||||||||||| || ||||||||||||||||| || || || |||| |||||||||| | Sbjct: 87 tacatcgctccggccttcatggacaagcttgtcgttcacatcaccaagaacttcatgaac 146 Query: 484 ctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaa 543 |||||||||||||||| || ||||| |||||||||||||||||||| ||||| || ||| Sbjct: 147 ttgcccaacatcaagattcctctcattttgggtatctggggaggcaaaggtcaggggaaa 206 Query: 544 tc 545 || Sbjct: 207 tc 208 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 349 ccgtcctcagctcctacgagtacgtcagc 377 ||||||| ||||||||||||||| ||||| Sbjct: 13 ccgtcctgagctcctacgagtacatcagc 41
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 115 bits (58), Expect = 2e-22 Identities = 106/122 (86%) Strand = Plus / Plus Query: 424 tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 483 ||||||||||| || ||||||||||||||||| || || || |||| |||||||||| | Sbjct: 281 tacatcgctccggccttcatggacaagcttgtcgttcacatcaccaagaacttcatgaac 340 Query: 484 ctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaa 543 |||||||||||||||| || ||||| |||||||||||||||||||| ||||| || ||| Sbjct: 341 ttgcccaacatcaagattcctctcattttgggtatctggggaggcaaaggtcaggggaaa 400 Query: 544 tc 545 || Sbjct: 401 tc 402 Score = 111 bits (56), Expect = 2e-21 Identities = 95/108 (87%) Strand = Plus / Plus Query: 270 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 329 |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| | Sbjct: 128 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 187 Query: 330 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagc 377 |||||||| |||||| | ||||||| ||||||||||||||| ||||| Sbjct: 188 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagc 235
>gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA, complete cds; nuclear gene for chloroplast product Length = 1671 Score = 115 bits (58), Expect = 2e-22 Identities = 106/122 (86%) Strand = Plus / Plus Query: 421 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 480 |||||||| ||||||||||| |||||||||||||||| || || |||| ||||||||| Sbjct: 469 ttctacattgctcctgcttttctggacaagcttgttgttcacatcaccaagaacttcatg 528 Query: 481 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 540 ||| |||||||||||||| | || ||||| | |||||||||||||||||||| |||||| Sbjct: 529 accttgcccaacatcaaggttcctctcattcttggtatctggggaggcaagggacaagga 588 Query: 541 aa 542 || Sbjct: 589 aa 590 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 240 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 298 ||||||||||| || ||||||||||| || ||||| || |||||||| || |||||||| Sbjct: 295 tggaagggtctggcctacgatatctctgatgaccaacaagacatcacaagggggaaggg 353
>gb|AF047352.1|AF047352 Datisca glomerata rubisco activase precursor, mRNA, complete cds Length = 1634 Score = 113 bits (57), Expect = 6e-22 Identities = 108/125 (86%) Strand = Plus / Plus Query: 421 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 480 |||||||| ||||| |||||||||||||||||||| || || || |||||||||||||| Sbjct: 476 ttctacatagctccagctttcatggacaagcttgtcgttcacatcaccaaaaacttcatg 535 Query: 481 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 540 || || |||||||| ||| | || ||||| ||||||||||||||||| || |||||||| Sbjct: 536 actctccccaacataaaggttcctctcattttgggtatctggggaggtaaaggtcaaggt 595 Query: 541 aaatc 545 ||||| Sbjct: 596 aaatc 600
>emb|AJ271896.1|PHA271896 Pinus halepensis partial mRNA for rubisco activase (rca gene) Length = 678 Score = 111 bits (56), Expect = 2e-21 Identities = 104/120 (86%) Strand = Plus / Plus Query: 423 ctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgac 482 |||||| ||||||||||| ||||||||||||||||| || |||| ||||||||||||| Sbjct: 156 ctacattgctcctgcttttatggacaagcttgttgttcacatctcgaaaaacttcatgaa 215 Query: 483 cctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaa 542 | |||| ||||||||| | || ||||| | ||||| ||||||||||||||||||||||| Sbjct: 216 cttgcctaacatcaaggttcctctcattcttggtatttggggaggcaagggtcaaggaaa 275
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 111 bits (56), Expect = 2e-21 Identities = 126/151 (83%) Strand = Plus / Plus Query: 234 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 293 |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272 Query: 294 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 353 |||||| |||| ||| |||||||||||||| | |||||||||||| ||||| Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatnnnnnacggcacccacgtcgccgtg 332 Query: 354 ctcagctcctacgagtacgtcagccagggcc 384 |||||||||||||| ||| |||||||||||| Sbjct: 333 ctcagctcctacgactacatcagccagggcc 363 Score = 101 bits (51), Expect = 2e-18 Identities = 93/107 (86%) Strand = Plus / Plus Query: 439 ttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaag 498 |||||||||||||| || ||||| |||||||| ||||||||||||||||| ||||||||| Sbjct: 417 ttcatggacaagctcgtcgtccacctctccaagaacttcatgaccctgccaaacatcaag 476 Query: 499 atcccactcatcttgggtatctggggaggcaagggtcaaggaaaatc 545 | || |||||| |||||||| ||||||||| || || |||||||| Sbjct: 477 gttcccctcatcctgggtatcgtgggaggcaaaggccagggaaaatc 523 Score = 91.7 bits (46), Expect = 2e-15 Identities = 107/127 (84%), Gaps = 9/127 (7%) Strand = Plus / Plus Query: 60 atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaa------c 113 ||||| || |||||||||||||||||||| |||||||| || || ||||||| | Sbjct: 21 atggcggccgccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagc 80 Query: 114 ttcctcgggaagaagctcaagaagc---aggtgacctcggccgtgaactaccatggcaag 170 |||||||||||||||||||| |||| ||||| || ||||||||| ||||||||||||| Sbjct: 81 ttcctcgggaagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaag 140 Query: 171 agctcca 177 ||||||| Sbjct: 141 agctcca 147
>gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence Length = 1519 Score = 109 bits (55), Expect = 1e-20 Identities = 109/127 (85%) Strand = Plus / Plus Query: 421 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 480 |||||||||||||||||||||||||||||||||||||| || || |||| |||||| | Sbjct: 473 ttctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttctta 532 Query: 481 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 540 || |||||||||||||| | ||||| || |||||| | |||||||| || |||||||| Sbjct: 533 acgttgcccaacatcaaggttccacttattttgggtgtttggggaggaaaaggtcaaggt 592 Query: 541 aaatcat 547 ||||||| Sbjct: 593 aaatcat 599
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1694 Score = 109 bits (55), Expect = 1e-20 Identities = 121/143 (84%) Strand = Plus / Plus Query: 403 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccat 462 ||||||| ||||| || |||||||| || || || ||||||||||||||||| ||||| Sbjct: 442 gacaacaacatggacggtttctacatagcaccagccttcatggacaagcttgtcgtccac 501 Query: 463 ctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctgg 522 || |||| |||||| ||| || || ||||||||||| || || ||||||||||||||| Sbjct: 502 atcaccaagaacttcttgagtctccctaacatcaagattcctctgatcttgggtatctgg 561 Query: 523 ggaggcaagggtcaaggaaaatc 545 |||||||| |||||||||||||| Sbjct: 562 ggaggcaaaggtcaaggaaaatc 584
>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1724 Score = 109 bits (55), Expect = 1e-20 Identities = 121/143 (84%) Strand = Plus / Plus Query: 403 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccat 462 ||||||| ||||| || |||||||| || || || ||||||||||||||||| ||||| Sbjct: 442 gacaacaacatggacggtttctacatagcaccagccttcatggacaagcttgtcgtccac 501 Query: 463 ctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctgg 522 || |||| |||||| ||| || || ||||||||||| || || ||||||||||||||| Sbjct: 502 atcaccaagaacttcttgagtctccctaacatcaagattcctctgatcttgggtatctgg 561 Query: 523 ggaggcaagggtcaaggaaaatc 545 |||||||| |||||||||||||| Sbjct: 562 ggaggcaaaggtcaaggaaaatc 584
>gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2 mRNA, partial cds Length = 1462 Score = 109 bits (55), Expect = 1e-20 Identities = 121/143 (84%) Strand = Plus / Plus Query: 403 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccat 462 ||||||| ||||| || ||||||||||||||||| |||||||||||||||||||| || Sbjct: 257 gacaacaacatggatggtttctacatcgctcctgcattcatggacaagcttgttgttcac 316 Query: 463 ctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctgg 522 || ||| ||||||||| |||| || ||||| ||| | || || ||| ||||||| ||| Sbjct: 317 atcagcaagaacttcatgtccctccctaacattaaggttcctctaatcctgggtatttgg 376 Query: 523 ggaggcaagggtcaaggaaaatc 545 |||||||| |||||||||||||| Sbjct: 377 ggaggcaaaggtcaaggaaaatc 399
>gb|AF041068.1|AF041068 Phaseolus vulgaris rubisco activase (Rca1) mRNA, complete cds Length = 1627 Score = 105 bits (53), Expect = 2e-19 Identities = 107/125 (85%) Strand = Plus / Plus Query: 421 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 480 |||||||| ||||| ||||| |||||||||||||||| || || |||| ||||||||| Sbjct: 465 ttctacattgctccagcttttttggacaagcttgttgttcacatcgccaagaacttcatg 524 Query: 481 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 540 ||| |||||||||||||| | || ||||| | ||| |||||||||||||||| |||||| Sbjct: 525 accttgcccaacatcaaggttcctctcattcttggtgtctggggaggcaagggacaagga 584 Query: 541 aaatc 545 ||||| Sbjct: 585 aaatc 589
>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase mRNA Length = 1853 Score = 93.7 bits (47), Expect = 6e-16 Identities = 92/107 (85%) Strand = Plus / Plus Query: 430 gctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgccc 489 ||||| ||||| ||||||||||||||||| || || |||| |||||||||||||| || Sbjct: 485 gctcccgcttttatggacaagcttgttgttcacatcaccaagaacttcatgacccttcct 544 Query: 490 aacatcaagatcccactcatcttgggtatctggggaggcaagggtca 536 ||||| ||| | || |||||||||||||| ||||||||||| ||||| Sbjct: 545 aacatgaaggttcctctcatcttgggtatttggggaggcaaaggtca 591 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 263 ctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggc 322 |||||||||||| || |||||||| ||||| ||||| | |||||||| ||||||||||| Sbjct: 319 ctccgacgaccaacaagacatcacaagaggaaagggtaaggtggactccctcttccaggc 378
>emb|X14212.1|ATRCA Arabidopsis thaliana mRNA for rubisco activase Length = 1652 Score = 87.7 bits (44), Expect = 4e-14 Identities = 161/196 (82%), Gaps = 3/196 (1%) Strand = Plus / Plus Query: 351 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacnttcgacaacac 410 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| || || ||||||| Sbjct: 391 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaac-ttggacaacat 449 Query: 411 catgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaa 470 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 450 gatggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaa 509 Query: 471 aaacttcatgaccctgcccaacatcaagatcccactcatcttggg-tatctggggaggca 529 |||||| |||| ||||| ||||||||| | ||||| || ||||| | || ||||||||| Sbjct: 510 gaacttcttgactctgcctaacatcaaggttccacttattttgggctctc-ggggaggca 568 Query: 530 agggtcaaggaaaatc 545 | |||||||| ||||| Sbjct: 569 aaggtcaaggtaaatc 584
>gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, complete cds Length = 1809 Score = 83.8 bits (42), Expect = 6e-13 Identities = 105/126 (83%) Strand = Plus / Plus Query: 420 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 479 ||||||||| || ||| |||||||||||||| ||||||| || || |||| |||| | | Sbjct: 514 cttctacattgccccttctttcatggacaagattgttgttcacatcaccaagaactactt 573 Query: 480 gaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagg 539 || | |||| ||||||||| | || || ||||||||||| ||||||||||| |||||||| Sbjct: 574 gaacttgcctaacatcaaggttcccctgatcttgggtatttggggaggcaaaggtcaagg 633 Query: 540 aaaatc 545 ||||| Sbjct: 634 taaatc 639
>gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map CIC10A06, complete sequence Length = 92624 Score = 77.8 bits (39), Expect = 3e-11 Identities = 66/75 (88%) Strand = Plus / Minus Query: 424 tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 483 ||||| ||||||||||||||||||||||||||||| || || |||| |||||| |||| Sbjct: 14910 tacattgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgact 14851 Query: 484 ctgcccaacatcaag 498 ||||| ||||||||| Sbjct: 14850 ctgcctaacatcaag 14836 Score = 48.1 bits (24), Expect = 0.030 Identities = 39/44 (88%) Strand = Plus / Minus Query: 502 ccactcatcttgggtatctggggaggcaagggtcaaggaaaatc 545 ||||| || |||||||| ||||||||||| |||||||| ||||| Sbjct: 14733 ccacttattttgggtatatggggaggcaaaggtcaaggtaaatc 14690
>gb|M86720.1|ATHRBCOALP Arabidopisis thaliana ribulose bisphosphate carboxylase/oxygenase activase (rca) gene, complete cds Length = 3974 Score = 77.8 bits (39), Expect = 3e-11 Identities = 66/75 (88%) Strand = Plus / Plus Query: 424 tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 483 ||||| ||||||||||||||||||||||||||||| || || |||| |||||| |||| Sbjct: 2373 tacattgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgact 2432 Query: 484 ctgcccaacatcaag 498 ||||| ||||||||| Sbjct: 2433 ctgcctaacatcaag 2447 Score = 48.1 bits (24), Expect = 0.030 Identities = 39/44 (88%) Strand = Plus / Plus Query: 502 ccactcatcttgggtatctggggaggcaagggtcaaggaaaatc 545 ||||| || |||||||| ||||||||||| |||||||| ||||| Sbjct: 2550 ccacttattttgggtatatggggaggcaaaggtcaaggtaaatc 2593
>gb|AF052424.1|AF052424 Datisca glomerata rubisco activase precursor, gene, partial cds Length = 1216 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 421 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 480 |||||||| ||||| |||||||||||||||||||| || || || |||||||||||||| Sbjct: 6 ttctacatagctccagctttcatggacaagcttgtcgttcacatcaccaaaaacttcatg 65 Query: 481 ac 482 || Sbjct: 66 ac 67 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Plus Query: 505 ctcatcttgggtatctggggaggcaagggtcaaggaaaatc 545 ||||| ||||||||||||||||| || |||||||| ||||| Sbjct: 186 ctcattttgggtatctggggaggtaaaggtcaaggtaaatc 226
>gb|S45033.1| rubisco activase, ribulosebisphosphate carboxylase/oxygenase activase {alternatively spliced} [spinach, Genomic, 3691 nt] Length = 3691 Score = 65.9 bits (33), Expect = 1e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 497 agatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatc 545 |||| ||||||||||||||| | |||||||||||||||||||| ||||| Sbjct: 2238 agataccactcatcttgggtgtttggggaggcaagggtcaaggtaaatc 2286 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Plus Query: 420 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 479 ||||||||| || ||||| || ||||||||||||||||| || || |||| |||||| | Sbjct: 2067 cttctacattgcccctgcctttatggacaagcttgttgttcacatcaccaagaacttctt 2126 Query: 480 gaccctgcccaacatcaag 498 || | |||||||||||||| Sbjct: 2127 gaacttgcccaacatcaag 2145
>emb|Y10657.1|CLRCAGENE C.littorale rca gene Length = 2513 Score = 65.9 bits (33), Expect = 1e-07 Identities = 102/125 (81%) Strand = Plus / Plus Query: 418 ggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttc 477 |||||||||||| ||||||||||| |||| ||| | ||||| | |||| |||||| Sbjct: 1128 ggcttctacatctctcctgctttcctggataagatgaccatccatgttgccaagaacttc 1187 Query: 478 atgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaa 537 ||| ||||||||| |||||| | || |||||| ||||||||||||| |||||||| || Sbjct: 1188 atggacctgcccaagatcaaggttcccctcatcctgggtatctggggtggcaagggccag 1247 Query: 538 ggaaa 542 ||||| Sbjct: 1248 ggaaa 1252
>gb|AC129090.22| Medicago truncatula clone mth2-14i8, complete sequence Length = 163160 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 403 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgt 458 ||||||||||||| || || ||||| || |||||||| ||||||||||||||||| Sbjct: 84295 gacaacaccatggatggtttttacattgcacctgcttttatggacaagcttgttgt 84240 Score = 48.1 bits (24), Expect = 0.030 Identities = 30/32 (93%) Strand = Plus / Minus Query: 514 ggtatctggggaggcaagggtcaaggaaaatc 545 |||||||||||||| || |||||||||||||| Sbjct: 83958 ggtatctggggaggtaaaggtcaaggaaaatc 83927
>gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate carboxylase/oxygenase activase mRNA, complete cds Length = 1693 Score = 54.0 bits (27), Expect = 5e-04 Identities = 57/67 (85%) Strand = Plus / Plus Query: 467 ccaaaaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggag 526 |||| ||||||||| ||||||||| |||||| | || ||||| ||||||||||||| | Sbjct: 406 ccaagaacttcatggacctgcccaagatcaaggtgcccctcattctgggtatctggggtg 465 Query: 527 gcaaggg 533 ||||||| Sbjct: 466 gcaaggg 472
>gb|AC130652.27| Medicago truncatula clone mth1-1k12, complete sequence Length = 105218 Score = 48.1 bits (24), Expect = 0.030 Identities = 30/32 (93%) Strand = Plus / Minus Query: 514 ggtatctggggaggcaagggtcaaggaaaatc 545 |||||||||||||| || |||||||||||||| Sbjct: 104933 ggtatctggggaggtaaaggtcaaggaaaatc 104902
>gb|AC135233.19| Medicago truncatula clone mth2-14c14, complete sequence Length = 108028 Score = 48.1 bits (24), Expect = 0.030 Identities = 45/52 (86%) Strand = Plus / Minus Query: 496 aagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcat 547 ||||| || ||||| ||||| || ||||||||||| ||||||||||| |||| Sbjct: 7541 aagattcctctcatattgggcatttggggaggcaaaggtcaaggaaagtcat 7490
>gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) gene, complete cds Length = 4500 Score = 46.1 bits (23), Expect = 0.12 Identities = 44/51 (86%) Strand = Plus / Plus Query: 483 cctgcccaacatcaagatcccactcatcttgggtatctggggaggcaaggg 533 ||||||||| |||||| | || ||||| ||||||||||||| |||||||| Sbjct: 1634 cctgcccaagatcaaggtgcccctcattctgggtatctggggtggcaaggg 1684
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 265 ccgacgaccagcaggacatcacc 287 ||||||||||||||||||||||| Sbjct: 1452088 ccgacgaccagcaggacatcacc 1452066
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 307 actcgctcttccaggcgcccac 328 |||||||||||||||||||||| Sbjct: 2553524 actcgctcttccaggcgcccac 2553503
>gb|AE015925.1| Chlamydophila caviae GPIC, complete genome Length = 1173390 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 122 gaagaagctcaagaagcaggtg 143 |||||||||||||||||||||| Sbjct: 632957 gaagaagctcaagaagcaggtg 632978
>emb|CR701838.2|CNS0G4HM Tetraodon nigroviridis full-length cDNA Length = 929 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 50 cagcacagagatggctgctgc 70 ||||||||||||||||||||| Sbjct: 531 cagcacagagatggctgctgc 511
>emb|CR686472.2|CNS0FSMS Tetraodon nigroviridis full-length cDNA Length = 939 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 50 cagcacagagatggctgctgc 70 ||||||||||||||||||||| Sbjct: 541 cagcacagagatggctgctgc 521
>emb|CR681817.2|CNS0FP1H Tetraodon nigroviridis full-length cDNA Length = 992 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 50 cagcacagagatggctgctgc 70 ||||||||||||||||||||| Sbjct: 595 cagcacagagatggctgctgc 575
>emb|CR680161.1|CNS0FNRH Tetraodon nigroviridis full-length cDNA Length = 1318 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 50 cagcacagagatggctgctgc 70 ||||||||||||||||||||| Sbjct: 932 cagcacagagatggctgctgc 912
>emb|CR675309.2|CNS0FK1F Tetraodon nigroviridis full-length cDNA Length = 1006 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 50 cagcacagagatggctgctgc 70 ||||||||||||||||||||| Sbjct: 609 cagcacagagatggctgctgc 589
>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome Length = 4222334 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 catggcagcggagaacatcg 216 |||||||||||||||||||| Sbjct: 1379894 catggcagcggagaacatcg 1379875
>gb|AY820769.1| Homo sapiens HCV NS5A trans-regulated protein 13 mRNA, complete cds Length = 2103 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 tggctgctgccttctcctcc 80 |||||||||||||||||||| Sbjct: 715 tggctgctgccttctcctcc 696
>gb|AE010322.1| Methanopyrus kandleri AV19 section 21 of 157 of the complete genome Length = 10732 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 261 atctccgacgaccagcaggacatc 284 |||||| ||||||||||||||||| Sbjct: 8676 atctcccacgaccagcaggacatc 8653
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 gcagcggagaacatcgacga 220 |||||||||||||||||||| Sbjct: 173412 gcagcggagaacatcgacga 173393
>ref|XM_520373.1| PREDICTED: Pan troglodytes LOC464867 (LOC464867), mRNA Length = 1685 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 324 cccacgggcgacggcacccacgag 347 ||||||||||||| |||||||||| Sbjct: 1369 cccacgggcgacgtcacccacgag 1392
>ref|NM_001003053.1| Canis familiaris androgen receptor (dihydrotestosterone receptor; testicular feminization; spinal and bulbar muscular atrophy; Kennedy disease) (AR), mRNA Length = 3577 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 gcaagagctccaaggccaac 185 |||||||||||||||||||| Sbjct: 3271 gcaagagctccaaggccaac 3290
>ref|NM_004741.1| Homo sapiens nucleolar and coiled-body phosphoprotein 1 (NOLC1), mRNA Length = 2502 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 tggctgctgccttctcctcc 80 |||||||||||||||||||| Sbjct: 766 tggctgctgccttctcctcc 747
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence Length = 384518 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 ctgccttctcctccaccgtc 86 |||||||||||||||||||| Sbjct: 240861 ctgccttctcctccaccgtc 240842
>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence Length = 2107794 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 482 ccctgcccaacatcaagatc 501 |||||||||||||||||||| Sbjct: 1130357 ccctgcccaacatcaagatc 1130376
>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome Length = 4222645 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 catggcagcggagaacatcg 216 |||||||||||||||||||| Sbjct: 1380755 catggcagcggagaacatcg 1380736
>ref|NM_017617.2| Homo sapiens Notch homolog 1, translocation-associated (Drosophila) (NOTCH1), mRNA Length = 9312 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 324 cccacgggcgacggcacccacgag 347 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726
>gb|BC001883.1| Homo sapiens nucleolar and coiled-body phosphoprotein 1, mRNA (cDNA clone MGC:1494 IMAGE:3533568), complete cds Length = 2464 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 tggctgctgccttctcctcc 80 |||||||||||||||||||| Sbjct: 722 tggctgctgccttctcctcc 703
>ref|XM_582842.2| PREDICTED: Bos taurus similar to chromodomain helicase DNA binding protein 4 (LOC506402), mRNA Length = 7219 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 ctgctgccttctcctccacc 83 |||||||||||||||||||| Sbjct: 5008 ctgctgccttctcctccacc 4989
>gb|DQ483716.1| Gymnogyps californianus clone 139F microsatellite sequence Length = 457 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 ctgctgccttctcctccacc 83 |||||||||||||||||||| Sbjct: 65 ctgctgccttctcctccacc 46
>gb|DQ483952.1| Gymnogyps californianus clone 118G microsatellite sequence Length = 470 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 ctgctgccttctcctccacc 83 |||||||||||||||||||| Sbjct: 65 ctgctgccttctcctccacc 46
>ref|XM_381225.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01049.1) partial mRNA Length = 22443 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 gaagaagctcaagaagcagg 141 |||||||||||||||||||| Sbjct: 8385 gaagaagctcaagaagcagg 8404
>gb|BC006769.2| Homo sapiens nucleolar and coiled-body phosphoprotein 1, mRNA (cDNA clone MGC:5049 IMAGE:2900024), complete cds Length = 3237 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 tggctgctgccttctcctcc 80 |||||||||||||||||||| Sbjct: 232 tggctgctgccttctcctcc 213
>gb|AC115709.11| Mus musculus chromosome 12, clone RP23-76M3, complete sequence Length = 193170 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 418 ggcttctacatcgctcctgctttc 441 ||||||| |||||||||||||||| Sbjct: 147044 ggcttctgcatcgctcctgctttc 147067
>emb|AL592301.14| Human DNA sequence from clone RP11-413M3 on chromosome 9 Contains the 3' end of the gene for activator of G-protein signalling 3 (AGS3), two novel genes, the CARD9 gene for caspase recruitment domain family member 9, the SNAPC4 gene for a 190kDa small nuclear RNA activating complex polypeptide 4, the SDCCAG3 gene for serologically defined colon cancer antigen 3, the INPP5E gene for a 72kDa inositol polyphosphate-5-phosphatase, the gene for phosphatidylinositol polyphosphate 5-phosphatase type IV (PPI5PIV), a novel gene (KIAA0310), the 3' end of the NOTCH1 gene for Notch homolog 1 translocation-associated (Drosophila) and twenty CpG islands, complete sequence Length = 188462 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 324 cccacgggcgacggcacccacgag 347 ||||||||||||| |||||||||| Sbjct: 166513 cccacgggcgacgtcacccacgag 166490
>emb|AL500527.19| Human DNA sequence from clone RP11-302K17 on chromosome 10 Contains the gene for Hermansky-Pudlak syndrome-6 protein (HPS6), two pseudogenes for transcription elongation factor B (SIII), polypeptide 1, the LDB1 gene for LIM domain binding 1, a novel gene (KIAA0595), the NOLC1 gene for nucleolar and coiled-body phosphoprotein 1 and five CpG islands, complete sequence Length = 158434 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 tggctgctgccttctcctcc 80 |||||||||||||||||||| Sbjct: 101054 tggctgctgccttctcctcc 101035
>gb|BT009750.1| Synthetic construct Homo sapiens nucleolar and coiled-body phosphoprotein 1 mRNA, partial cds Length = 2103 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 tggctgctgccttctcctcc 80 |||||||||||||||||||| Sbjct: 715 tggctgctgccttctcctcc 696
>gb|AC104422.4| Homo sapiens chromosome 18, clone RP11-260B14, complete sequence Length = 147210 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 ccagagggaagggcatcgtg 305 |||||||||||||||||||| Sbjct: 35948 ccagagggaagggcatcgtg 35967
>emb|CR602162.1| full-length cDNA clone CS0DI026YK04 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1812 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 tggctgctgccttctcctcc 80 |||||||||||||||||||| Sbjct: 717 tggctgctgccttctcctcc 698
>dbj|AK056755.1| Homo sapiens cDNA FLJ32193 fis, clone PLACE6002345, highly similar to H.sapiens mRNA for nucleolar phosphoprotein p130 Length = 2288 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 tggctgctgccttctcctcc 80 |||||||||||||||||||| Sbjct: 570 tggctgctgccttctcctcc 551
>gb|AC108471.3| Homo sapiens BAC clone RP11-539G18 from 4, complete sequence Length = 141442 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 457 gtccatctctccaaaaactt 476 |||||||||||||||||||| Sbjct: 63248 gtccatctctccaaaaactt 63229
>gb|AC091237.6| Mus musculus Strain C57BL7/J Chromosome 14 RP23-470F15, complete sequence Length = 177104 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 acagagatggctgctgcctt 73 |||||||||||||||||||| Sbjct: 121162 acagagatggctgctgcctt 121143
>gb|AF197950.1| Canis familiaris androgen receptor (AR) mRNA, complete cds Length = 3577 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 gcaagagctccaaggccaac 185 |||||||||||||||||||| Sbjct: 3271 gcaagagctccaaggccaac 3290
>gb|AC100806.2| Homo sapiens chromosome 18, clone CTB-2341H11, complete sequence Length = 81641 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 ccagagggaagggcatcgtg 305 |||||||||||||||||||| Sbjct: 47211 ccagagggaagggcatcgtg 47230
>gb|AC154546.2| Mus musculus BAC clone RP23-431I7 from chromosome 16, complete sequence Length = 180261 Score = 40.1 bits (20), Expect = 7.4 Identities = 35/40 (87%) Strand = Plus / Plus Query: 37 aaggtcgaccaagcagcacagagatggctgctgccttctc 76 |||||| ||||| ||||||| || ||||||||||||||| Sbjct: 111680 aaggtccaccaatgagcacagtgagggctgctgccttctc 111719
>gb|AE009524.1| Brucella melitensis 16M chromosome I, section 81 of 195 of the complete sequence Length = 10900 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 482 ccctgcccaacatcaagatc 501 |||||||||||||||||||| Sbjct: 7760 ccctgcccaacatcaagatc 7741
>gb|AF308602.1|AF308602 Homo sapiens NOTCH 1 (N1) mRNA, complete cds Length = 7693 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 324 cccacgggcgacggcacccacgag 347 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726
>gb|AC019012.4|AC019012 Genomic Sequence For Arabidopsis thaliana Clone T3J11 From Chromosome V, complete sequence Length = 130299 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 176 caaggccaacaggttcacagtcat 199 ||||||||||||||||| |||||| Sbjct: 13824 caaggccaacaggttcagagtcat 13847
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 cgatatctccgacgaccagc 276 |||||||||||||||||||| Sbjct: 4182002 cgatatctccgacgaccagc 4181983
>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence Length = 2124241 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 482 ccctgcccaacatcaagatc 501 |||||||||||||||||||| Sbjct: 1147720 ccctgcccaacatcaagatc 1147739
>gb|AY891983.1| Synthetic construct Homo sapiens clone FLH024209.01L nucleolar and coiled-body phosphoprotein 1 (NOLC1) mRNA, partial cds Length = 2103 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 tggctgctgccttctcctcc 80 |||||||||||||||||||| Sbjct: 715 tggctgctgccttctcctcc 696
>emb|CR974583.24| Mouse DNA sequence from clone RP23-118G7 on chromosome 12, complete sequence Length = 219072 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 418 ggcttctacatcgctcctgctttc 441 ||||||| |||||||||||||||| Sbjct: 141825 ggcttctgcatcgctcctgctttc 141848
>gb|AC018660.1|AC018660 Genomic Sequence For Arabidopsis thaliana Clone F11P10, Chromosome V, complete sequence Length = 105589 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 176 caaggccaacaggttcacagtcat 199 ||||||||||||||||| |||||| Sbjct: 27506 caaggccaacaggttcagagtcat 27483
>gb|AC134613.5| Mus musculus BAC clone RP23-133J23 from 8, complete sequence Length = 187148 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 aagaagctcaagaagcaggt 142 |||||||||||||||||||| Sbjct: 44669 aagaagctcaagaagcaggt 44650
>gb|AC153897.4| Mus musculus 10 BAC RP23-119E2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 209755 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 tggctgctgccttctcctcc 80 |||||||||||||||||||| Sbjct: 46900 tggctgctgccttctcctcc 46919
>dbj|D21262.1|HUMORFGA Homo sapiens KIAA0035 mRNA, partial cds Length = 3727 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 tggctgctgccttctcctcc 80 |||||||||||||||||||| Sbjct: 708 tggctgctgccttctcctcc 689
>dbj|AP003156.1| Mus musculus genomic DNA, chromosome 16q clone:RP21-56O15, complete sequences Length = 162128 Score = 40.1 bits (20), Expect = 7.4 Identities = 35/40 (87%) Strand = Plus / Minus Query: 37 aaggtcgaccaagcagcacagagatggctgctgccttctc 76 |||||| ||||| ||||||| || ||||||||||||||| Sbjct: 108212 aaggtccaccaatgagcacagtgagggctgctgccttctc 108173
>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain 2308 Length = 2121359 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 482 ccctgcccaacatcaagatc 501 |||||||||||||||||||| Sbjct: 1144872 ccctgcccaacatcaagatc 1144891
>gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete genome Length = 2056416 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 57 gagatggctgctgccttctcctcc 80 ||||||||||||||||||| |||| Sbjct: 472845 gagatggctgctgccttctgctcc 472822
>gb|U51683.1|BAU51683 Brucella abortus phosphatidate cytidyltransferase (cdsA), group 1 outer membrane protein (omp1), LpxD (lpxD), FabZ (fabZ), and LpxA (lpxA) genes, complete cds Length = 8895 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 482 ccctgcccaacatcaagatc 501 |||||||||||||||||||| Sbjct: 8238 ccctgcccaacatcaagatc 8219
>gb|M73980.1|HUMTAN1 Human TAN-1 mRNA (homologue of Drosophila Notch gene), 5' end Length = 7332 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 324 cccacgggcgacggcacccacgag 347 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726
>emb|Z34289.1|HSNUCPP H.sapiens mRNA for nucleolar phosphoprotein p130 Length = 2502 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 tggctgctgccttctcctcc 80 |||||||||||||||||||| Sbjct: 766 tggctgctgccttctcctcc 747 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,470,624 Number of Sequences: 3902068 Number of extensions: 4470624 Number of successful extensions: 81942 Number of sequences better than 10.0: 119 Number of HSP's better than 10.0 without gapping: 119 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81405 Number of HSP's gapped (non-prelim): 510 length of query: 547 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 524 effective length of database: 17,143,297,704 effective search space: 8983087996896 effective search space used: 8983087996896 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
