| Clone Name | baal30m23 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK061689.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-B09, full insert sequence Length = 1525 Score = 710 bits (358), Expect = 0.0 Identities = 546/608 (89%), Gaps = 3/608 (0%) Strand = Plus / Plus Query: 22 tagaagggtcctatgggattcattttcaagacgtggttctagaggttatctagattcaga 81 ||||||||| || ||||| ||||||| |||||| |||| ||||| ||| ||||||| || Sbjct: 535 tagaagggttctgtgggacacattttccagacgtagttcaagaggatatttagattctga 594 Query: 82 cactgatgatcttggattttacagtagatggctagaccttggtgatgatctttttgggga 141 || |||||||| ||||||||||| ||||||||||||||||||||||| ||||||| ||| Sbjct: 595 taccgatgatctgggattttacagcagatggctagaccttggtgatgaactttttgcgga 654 Query: 142 tgaggttgaggaggcacgctacttccatcgtagacgccatggttcaatcagagtaaacca 201 |||| ||||||||||||| | ||| ||||| ||||||||||||||||||||||||| ||| Sbjct: 655 tgagattgaggaggcacggttctttcatcggagacgccatggttcaatcagagtaagcca 714 Query: 202 gtattcaagatctcggattagggagcaccgtcgtgctatttttgatagtgggaacgggca 261 ||||||||||||||||||||||||||| || |||||| |||||||||| || | | || Sbjct: 715 gtattcaagatctcggattagggagcatcggcgtgctgtttttgatagcggtactgacca 774 Query: 262 aagtactgctgcttgtcctttggggatacaccaaattggcagatgcacctgtgatgcatt 321 |||||| | |||||||||||||||||| ||||||||||||||||||||||||||| | || Sbjct: 775 aagtaccgttgcttgtcctttggggatccaccaaattggcagatgcacctgtgattcctt 834 Query: 322 cttggtcgctgaagaatctagtgctcgtgcaagtatatcaagaattgtcatgttaacaga 381 |||| | ||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct: 835 cttgattgctgaagaatctagtgcccgtgcaagtatatcaagaattgtcatgttaaccga 894 Query: 382 ggcattatttgaggtattggatgagattcatcggcaaccctcgtcactttcactttccat 441 |||||||||||||||||||||||| ||||| |||||||| | |||||||| |||||||| Sbjct: 895 ggcattatttgaggtattggatgaaattcaccggcaacctgcatcactttcgctttccat 954 Query: 442 ggcctctgctcaagctccagagtctgtggttaattcattaccatgtaagagctacaaaaa 501 || |||||| || |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 955 ggtctctgcccaggctccagaatctgtggttaattcattaccatgtaagagctacaaaaa 1014 Query: 502 gcttgagacagcccaatgcagtgctgatatggaacagtgccatatctgcttaactgaata 561 || |||||||||||||||||| ||| ||||||||||| || ||||||||||||||||| Sbjct: 1015 gc---agacagcccaatgcagtgatgacatggaacagtgtcacatctgcttaactgaata 1071 Query: 562 cgaggatggagatcagataagaagtcttccgtgcaaacacgagtttcacctgcagtgtgt 621 ||||||||||||||||||||||| || ||||||||||||||||||||| ||| |||||| Sbjct: 1072 tgaggatggagatcagataagaagcctcccgtgcaaacacgagtttcacttgctgtgtgt 1131 Query: 622 tgacaagt 629 |||||||| Sbjct: 1132 tgacaagt 1139
>gb|AY105180.1| Zea mays PCO105283 mRNA sequence Length = 746 Score = 220 bits (111), Expect = 4e-54 Identities = 207/239 (86%) Strand = Plus / Plus Query: 389 tttgaggtattggatgagattcatcggcaaccctcgtcactttcactttccatggcctct 448 |||||||| |||||||| ||||| || ||||| | ||||||||||||||||||| |||| Sbjct: 250 tttgaggtgttggatgaaattcaccgtcaacctgcatcactttcactttccatggtctct 309 Query: 449 gctcaagctccagagtctgtggttaattcattaccatgtaagagctacaaaaagcttgag 508 | ||| ||||| || ||||| ||| |||| || || || ||||||||||||||||| ||| Sbjct: 310 gttcaggctcctgaatctgtagttgattcgttgccgtgcaagagctacaaaaagctagag 369 Query: 509 acagcccaatgcagtgctgatatggaacagtgccatatctgcttaactgaatacgaggat 568 || ||||| |||||| ||||||||||||||||||||||||| |||||||||| |||||| Sbjct: 370 gcaccccaacgcagtgatgatatggaacagtgccatatctgcctaactgaatatgaggat 429 Query: 569 ggagatcagataagaagtcttccgtgcaaacacgagtttcacctgcagtgtgttgacaa 627 ||||| |||||| ||| |||||| ||||| |||||||| |||||||| ||||||||||| Sbjct: 430 ggagaccagatacgaattcttccttgcaagcacgagttccacctgcaatgtgttgacaa 488
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 214 bits (108), Expect = 3e-52 Identities = 174/196 (88%) Strand = Plus / Minus Query: 22 tagaagggtcctatgggattcattttcaagacgtggttctagaggttatctagattcaga 81 ||||||||| || ||||| ||||||| |||||| |||| ||||| ||| ||||||| || Sbjct: 34013712 tagaagggttctgtgggacacattttccagacgtagttcaagaggatatttagattctga 34013653 Query: 82 cactgatgatcttggattttacagtagatggctagaccttggtgatgatctttttgggga 141 || |||||||| ||||||||||| ||||||||||||||||||||||| ||||||| ||| Sbjct: 34013652 taccgatgatctgggattttacagcagatggctagaccttggtgatgaactttttgcgga 34013593 Query: 142 tgaggttgaggaggcacgctacttccatcgtagacgccatggttcaatcagagtaaacca 201 |||| ||||||||||||| | ||| ||||| ||||||||||||||||||||||||| ||| Sbjct: 34013592 tgagattgaggaggcacggttctttcatcggagacgccatggttcaatcagagtaagcca 34013533 Query: 202 gtattcaagatctcgg 217 |||||||||||||||| Sbjct: 34013532 gtattcaagatctcgg 34013517 Score = 214 bits (108), Expect = 3e-52 Identities = 162/180 (90%) Strand = Plus / Minus Query: 217 gattagggagcaccgtcgtgctatttttgatagtgggaacgggcaaagtactgctgcttg 276 |||||||||||| || |||||| |||||||||| || | | |||||||| | |||||| Sbjct: 34013131 gattagggagcatcggcgtgctgtttttgatagcggtactgaccaaagtaccgttgcttg 34013072 Query: 277 tcctttggggatacaccaaattggcagatgcacctgtgatgcattcttggtcgctgaaga 336 |||||||||||| ||||||||||||||||||||||||||| | |||||| | |||||||| Sbjct: 34013071 tcctttggggatccaccaaattggcagatgcacctgtgattccttcttgattgctgaaga 34013012 Query: 337 atctagtgctcgtgcaagtatatcaagaattgtcatgttaacagaggcattatttgaggt 396 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 34013011 atctagtgcccgtgcaagtatatcaagaattgtcatgttaaccgaggcattatttgaggt 34012952 Score = 170 bits (86), Expect = 4e-39 Identities = 133/148 (89%), Gaps = 3/148 (2%) Strand = Plus / Minus Query: 393 aggtattggatgagattcatcggcaaccctcgtcactttcactttccatggcctctgctc 452 ||||||||||||| ||||| |||||||| | |||||||| |||||||||| |||||| | Sbjct: 34012203 aggtattggatgaaattcaccggcaacctgcatcactttcgctttccatggtctctgccc 34012144 Query: 453 aagctccagagtctgtggttaattcattaccatgtaagagctacaaaaagcttgagacag 512 | |||||||| |||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 34012143 aggctccagaatctgtggttaattcattaccatgtaagagctacaaaaagc---agacag 34012087 Query: 513 cccaatgcagtgctgatatggaacagtg 540 |||||||||||| ||| ||||||||||| Sbjct: 34012086 cccaatgcagtgatgacatggaacagtg 34012059 Score = 167 bits (84), Expect = 6e-38 Identities = 131/146 (89%), Gaps = 3/146 (2%) Strand = Plus / Plus Query: 395 gtattggatgagattcatcggcaaccctcgtcactttcactttccatggcctctgctcaa 454 ||||||||||| |||||||||||||| | ||||||||||||||||||| |||||| || Sbjct: 20472800 gtattggatgaaattcatcggcaacctgcatcactttcactttccatggtctctgcccag 20472859 Query: 455 gctccagagtctgtggttaattcattaccatgtaagagctacaaaaagcttgagacagcc 514 |||||||| || ||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 20472860 gctccagaatccgtggttaattcattaccatgtaagagctacaaaaagc---agacagcc 20472916 Query: 515 caatgcagtgctgatatggaacagtg 540 |||||||||| | | ||||||||||| Sbjct: 20472917 caatgcagtgataacatggaacagtg 20472942 Score = 129 bits (65), Expect = 1e-26 Identities = 80/85 (94%) Strand = Plus / Minus Query: 545 atctgcttaactgaatacgaggatggagatcagataagaagtcttccgtgcaaacacgag 604 ||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||| Sbjct: 34010939 atctgcttaactgaatatgaggatggagatcagataagaagcctcccgtgcaaacacgag 34010880 Query: 605 tttcacctgcagtgtgttgacaagt 629 |||||| ||| |||||||||||||| Sbjct: 34010879 tttcacttgctgtgtgttgacaagt 34010855
>dbj|AP005295.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1695_D07 Length = 110585 Score = 214 bits (108), Expect = 3e-52 Identities = 174/196 (88%) Strand = Plus / Minus Query: 22 tagaagggtcctatgggattcattttcaagacgtggttctagaggttatctagattcaga 81 ||||||||| || ||||| ||||||| |||||| |||| ||||| ||| ||||||| || Sbjct: 40987 tagaagggttctgtgggacacattttccagacgtagttcaagaggatatttagattctga 40928 Query: 82 cactgatgatcttggattttacagtagatggctagaccttggtgatgatctttttgggga 141 || |||||||| ||||||||||| ||||||||||||||||||||||| ||||||| ||| Sbjct: 40927 taccgatgatctgggattttacagcagatggctagaccttggtgatgaactttttgcgga 40868 Query: 142 tgaggttgaggaggcacgctacttccatcgtagacgccatggttcaatcagagtaaacca 201 |||| ||||||||||||| | ||| ||||| ||||||||||||||||||||||||| ||| Sbjct: 40867 tgagattgaggaggcacggttctttcatcggagacgccatggttcaatcagagtaagcca 40808 Query: 202 gtattcaagatctcgg 217 |||||||||||||||| Sbjct: 40807 gtattcaagatctcgg 40792 Score = 214 bits (108), Expect = 3e-52 Identities = 162/180 (90%) Strand = Plus / Minus Query: 217 gattagggagcaccgtcgtgctatttttgatagtgggaacgggcaaagtactgctgcttg 276 |||||||||||| || |||||| |||||||||| || | | |||||||| | |||||| Sbjct: 40406 gattagggagcatcggcgtgctgtttttgatagcggtactgaccaaagtaccgttgcttg 40347 Query: 277 tcctttggggatacaccaaattggcagatgcacctgtgatgcattcttggtcgctgaaga 336 |||||||||||| ||||||||||||||||||||||||||| | |||||| | |||||||| Sbjct: 40346 tcctttggggatccaccaaattggcagatgcacctgtgattccttcttgattgctgaaga 40287 Query: 337 atctagtgctcgtgcaagtatatcaagaattgtcatgttaacagaggcattatttgaggt 396 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 40286 atctagtgcccgtgcaagtatatcaagaattgtcatgttaaccgaggcattatttgaggt 40227 Score = 170 bits (86), Expect = 4e-39 Identities = 133/148 (89%), Gaps = 3/148 (2%) Strand = Plus / Minus Query: 393 aggtattggatgagattcatcggcaaccctcgtcactttcactttccatggcctctgctc 452 ||||||||||||| ||||| |||||||| | |||||||| |||||||||| |||||| | Sbjct: 39478 aggtattggatgaaattcaccggcaacctgcatcactttcgctttccatggtctctgccc 39419 Query: 453 aagctccagagtctgtggttaattcattaccatgtaagagctacaaaaagcttgagacag 512 | |||||||| |||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 39418 aggctccagaatctgtggttaattcattaccatgtaagagctacaaaaagc---agacag 39362 Query: 513 cccaatgcagtgctgatatggaacagtg 540 |||||||||||| ||| ||||||||||| Sbjct: 39361 cccaatgcagtgatgacatggaacagtg 39334 Score = 129 bits (65), Expect = 1e-26 Identities = 80/85 (94%) Strand = Plus / Minus Query: 545 atctgcttaactgaatacgaggatggagatcagataagaagtcttccgtgcaaacacgag 604 ||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||| Sbjct: 38214 atctgcttaactgaatatgaggatggagatcagataagaagcctcccgtgcaaacacgag 38155 Query: 605 tttcacctgcagtgtgttgacaagt 629 |||||| ||| |||||||||||||| Sbjct: 38154 tttcacttgctgtgtgttgacaagt 38130
>dbj|AP005771.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0069D13 Length = 157088 Score = 167 bits (84), Expect = 6e-38 Identities = 131/146 (89%), Gaps = 3/146 (2%) Strand = Plus / Plus Query: 395 gtattggatgagattcatcggcaaccctcgtcactttcactttccatggcctctgctcaa 454 ||||||||||| |||||||||||||| | ||||||||||||||||||| |||||| || Sbjct: 115224 gtattggatgaaattcatcggcaacctgcatcactttcactttccatggtctctgcccag 115283 Query: 455 gctccagagtctgtggttaattcattaccatgtaagagctacaaaaagcttgagacagcc 514 |||||||| || ||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 115284 gctccagaatccgtggttaattcattaccatgtaagagctacaaaaagc---agacagcc 115340 Query: 515 caatgcagtgctgatatggaacagtg 540 |||||||||| | | ||||||||||| Sbjct: 115341 caatgcagtgataacatggaacagtg 115366
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 143 bits (72), Expect = 8e-31 Identities = 128/146 (87%), Gaps = 3/146 (2%) Strand = Plus / Minus Query: 395 gtattggatgagattcatcggcaaccctcgtcactttcactttccatggcctctgctcaa 454 ||||||||||| ||||| |||||||| | ||||||||||||||||| | |||||| || Sbjct: 16738000 gtattggatgaaattcaccggcaacctgcatcactttcactttccattgtctctgcccag 16737941 Query: 455 gctccagagtctgtggttaattcattaccatgtaagagctacaaaaagcttgagacagcc 514 |||||||| || ||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 16737940 gctccagaatccgtggttaattcattaccatgtaagagctacaaaaagc---agacagcc 16737884 Query: 515 caatgcagtgctgatatggaacagtg 540 |||| ||||| ||| ||| ||||||| Sbjct: 16737883 caatacagtgatgacatgtaacagtg 16737858
>dbj|AP005308.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0047B10 Length = 158798 Score = 143 bits (72), Expect = 8e-31 Identities = 128/146 (87%), Gaps = 3/146 (2%) Strand = Plus / Minus Query: 395 gtattggatgagattcatcggcaaccctcgtcactttcactttccatggcctctgctcaa 454 ||||||||||| ||||| |||||||| | ||||||||||||||||| | |||||| || Sbjct: 86694 gtattggatgaaattcaccggcaacctgcatcactttcactttccattgtctctgcccag 86635 Query: 455 gctccagagtctgtggttaattcattaccatgtaagagctacaaaaagcttgagacagcc 514 |||||||| || ||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 86634 gctccagaatccgtggttaattcattaccatgtaagagctacaaaaagc---agacagcc 86578 Query: 515 caatgcagtgctgatatggaacagtg 540 |||| ||||| ||| ||| ||||||| Sbjct: 86577 caatacagtgatgacatgtaacagtg 86552
>gb|AY111026.1| Zea mays CL11898_1 mRNA sequence Length = 705 Score = 48.1 bits (24), Expect = 0.035 Identities = 48/56 (85%) Strand = Plus / Minus Query: 356 atatcaagaattgtcatgttaacagaggcattatttgaggtattggatgagattca 411 ||||||||||||| |||||| |||| ||| |||||||||| ||||||| ||||| Sbjct: 567 atatcaagaattggtatgttagcagaagcactatttgaggttctggatgaaattca 512
>emb|CT025584.18| Mouse DNA sequence from clone RP23-78N7 on chromosome 16, complete sequence Length = 209542 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 426 cactttcactttccatggcctct 448 ||||||||||||||||||||||| Sbjct: 28494 cactttcactttccatggcctct 28516
>gb|AC170887.2| Mus musculus BAC clone RP24-67J21 from chromosome 16, complete sequence Length = 137231 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 426 cactttcactttccatggcctct 448 ||||||||||||||||||||||| Sbjct: 76967 cactttcactttccatggcctct 76945
>ref|XM_475181.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1650 Score = 42.1 bits (21), Expect = 2.2 Identities = 45/53 (84%) Strand = Plus / Plus Query: 356 atatcaagaattgtcatgttaacagaggcattatttgaggtattggatgagat 408 ||||||||||| || |||||| |||| ||| | |||||||| |||||||||| Sbjct: 1279 atatcaagaatcgttatgttagcagaagcactttttgaggttctggatgagat 1331
>gb|AC122812.4| Mus musculus BAC clone RP23-285M9 from 1, complete sequence Length = 208430 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 436 ttccatggcctctgctcaagctcca 460 ||||||||||||||||| ||||||| Sbjct: 172758 ttccatggcctctgctccagctcca 172734
>gb|AC098737.3| Mus musculus BAC clone RP23-122D16 from 1, complete sequence Length = 212615 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 436 ttccatggcctctgctcaagctcca 460 ||||||||||||||||| ||||||| Sbjct: 153472 ttccatggcctctgctccagctcca 153496
>gb|AC092595.2| Homo sapiens BAC clone RP11-94N7 from 7, complete sequence Length = 136960 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 117 accttggtgatgatctttttg 137 ||||||||||||||||||||| Sbjct: 1483 accttggtgatgatctttttg 1503
>emb|AL080248.7|HSBA19D2 Human DNA sequence from clone RP11-19D2 on chromosome 20 Contains the a novel gene and the 5' end of a novel gene, complete sequence Length = 166913 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 134 tttggggatgaggttgaggag 154 ||||||||||||||||||||| Sbjct: 118490 tttggggatgaggttgaggag 118470
>emb|BX679664.7| Human DNA sequence from clone RP11-20O24 on chromosome 1 Contains the TAF13 gene for TAF13 RNA polymerase II TATA box binding protein (TBP)-associated factor 18kDa, a RAN member RAS oncogene family (RAN) pseudogene, a ribosomal protein S27 (metallopanstimulin 1) (RPS27) pseudogene, the 5' end of a novel gene (KIAA0893) and three CpG islands, complete sequence Length = 107685 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 520 cagtgctgatatggaacagtgccat 544 |||||||||||||||||| |||||| Sbjct: 88694 cagtgctgatatggaacactgccat 88670
>emb|AL355609.9| Human DNA sequence from clone RP11-282D7 on chromosome 13 Contains the 5' end of a novel gene and a CpG island, complete sequence Length = 106534 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 117 accttggtgatgatctttttg 137 ||||||||||||||||||||| Sbjct: 58766 accttggtgatgatctttttg 58786
>emb|BX248355.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment 2/8 Length = 341553 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 134 tttggggatgaggttgaggag 154 ||||||||||||||||||||| Sbjct: 212462 tttggggatgaggttgaggag 212442
>emb|AJ719698.1| Gallus gallus mRNA for hypothetical protein, clone 5g6 Length = 3216 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 432 cactttccatggcctctgctc 452 ||||||||||||||||||||| Sbjct: 1266 cactttccatggcctctgctc 1246
>ref|NM_001007834.1| Gallus gallus synaptogyrin 3 (SYNGR3), mRNA Length = 3216 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 432 cactttccatggcctctgctc 452 ||||||||||||||||||||| Sbjct: 1266 cactttccatggcctctgctc 1246
>gb|AC103840.2| Homo sapiens chromosome 8, clone RP11-317N12, complete sequence Length = 172361 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 118 ccttggtgatgatctttttgg 138 ||||||||||||||||||||| Sbjct: 58007 ccttggtgatgatctttttgg 57987
>gb|AC093781.2| Homo sapiens BAC clone RP11-183D16 from 4, complete sequence Length = 156058 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 117 accttggtgatgatctttttg 137 ||||||||||||||||||||| Sbjct: 20601 accttggtgatgatctttttg 20621
>gb|AC087671.9| Homo sapiens chromosome 8, clone RP11-597D18, complete sequence Length = 207503 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 118 ccttggtgatgatctttttgg 138 ||||||||||||||||||||| Sbjct: 207014 ccttggtgatgatctttttgg 207034
>dbj|AK101529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033047I01, full insert sequence Length = 2235 Score = 42.1 bits (21), Expect = 2.2 Identities = 45/53 (84%) Strand = Plus / Plus Query: 356 atatcaagaattgtcatgttaacagaggcattatttgaggtattggatgagat 408 ||||||||||| || |||||| |||| ||| | |||||||| |||||||||| Sbjct: 1471 atatcaagaatcgttatgttagcagaagcactttttgaggttctggatgagat 1523
>dbj|AK064352.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-A09, full insert sequence Length = 1402 Score = 42.1 bits (21), Expect = 2.2 Identities = 45/53 (84%) Strand = Plus / Plus Query: 356 atatcaagaattgtcatgttaacagaggcattatttgaggtattggatgagat 408 ||||||||||| || |||||| |||| ||| | |||||||| |||||||||| Sbjct: 638 atatcaagaatcgttatgttagcagaagcactttttgaggttctggatgagat 690
>dbj|AP006124.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT15N01, TM0209, complete sequence Length = 104684 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 135 ttggggatgaggttgaggagg 155 ||||||||||||||||||||| Sbjct: 96815 ttggggatgaggttgaggagg 96795
>gb|AC134443.3| Mus musculus BAC clone RP24-107B13 from chromosome 8, complete sequence Length = 182604 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 ctgctgcttgtcctttgggg 286 |||||||||||||||||||| Sbjct: 40912 ctgctgcttgtcctttgggg 40931
>gb|AC183529.4| Pan troglodytes BAC clone CH251-669H19 from chromosome 3, complete sequence Length = 216860 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 428 ctttcactttccatggcctctgctcaag 455 ||||||||||||||| ||| |||||||| Sbjct: 85427 ctttcactttccatgacctgtgctcaag 85454
>ref|XM_848814.1| PREDICTED: Canis familiaris similar to CG13648-PA (LOC611170), mRNA Length = 5130 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 442 ggcctctgctcaagctccag 461 |||||||||||||||||||| Sbjct: 2448 ggcctctgctcaagctccag 2467
>ref|XM_847956.1| PREDICTED: Canis familiaris similar to adenylate kinase 3 (LOC480491), mRNA Length = 6237 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 442 ggcctctgctcaagctccag 461 |||||||||||||||||||| Sbjct: 3189 ggcctctgctcaagctccag 3208
>gb|AC011288.4| Homo sapiens BAC clone RP11-27B1 from 7, complete sequence Length = 159722 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 ccttggtgatgatctttttg 137 |||||||||||||||||||| Sbjct: 94708 ccttggtgatgatctttttg 94689
>gb|AC092105.6| Homo sapiens BAC clone RP11-398K14 from 7, complete sequence Length = 71602 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 ccttggtgatgatctttttg 137 |||||||||||||||||||| Sbjct: 616 ccttggtgatgatctttttg 597
>gb|AC010125.4| Homo sapiens PAC clone RP5-1075C10 from 7, complete sequence Length = 171457 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 ccttggtgatgatctttttg 137 |||||||||||||||||||| Sbjct: 170073 ccttggtgatgatctttttg 170054
>gb|AC145819.1| Pan troglodytes BAC clone RP43-99J22 from 7, complete sequence Length = 159950 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 ccttggtgatgatctttttg 137 |||||||||||||||||||| Sbjct: 78954 ccttggtgatgatctttttg 78973
>gb|CP000323.1| Psychrobacter cryohalolentis K5, complete genome Length = 3059876 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 accgtcgtgctatttttgat 247 |||||||||||||||||||| Sbjct: 2096048 accgtcgtgctatttttgat 2096067
>emb|AL592486.9| Human DNA sequence from clone RP13-60M5 on chromosome 9 Contains the 3' end of a novel gene, a novel gene and a CpG island, complete sequence Length = 93471 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 ccttggtgatgatctttttg 137 |||||||||||||||||||| Sbjct: 71608 ccttggtgatgatctttttg 71627
>gb|AC117481.8| Homo sapiens 3 BAC RP11-642N14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 138412 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 428 ctttcactttccatggcctctgctcaag 455 ||||||||||||||| ||| |||||||| Sbjct: 15784 ctttcactttccatgacctgtgctcaag 15757
>emb|AL096709.11|HSDJ20N4 Human DNA sequence from clone RP1-20N4 on chromosome 6q12-13 Contains a beclin 1 (BECN1) pseudogene, complete sequence Length = 138025 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 ccttggtgatgatctttttg 137 |||||||||||||||||||| Sbjct: 47791 ccttggtgatgatctttttg 47772
>gb|U96771.1| Prevotella bryantii putative polygalacturonase, B-1,4-endoglucanase, and mannanase genes, complete cds; and unknown genes Length = 10521 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 tcctttggggatacaccaaa 296 |||||||||||||||||||| Sbjct: 1954 tcctttggggatacaccaaa 1935
>emb|AL161504.2|ATCHRIV16 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 16 Length = 196766 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 ccttggtgatgatctttttg 137 |||||||||||||||||||| Sbjct: 148532 ccttggtgatgatctttttg 148551
>emb|AL138653.1|ATT32A11 Arabidopsis thaliana DNA chromosome 3, BAC clone T32A11 Length = 129021 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 ccttggtgatgatctttttg 137 |||||||||||||||||||| Sbjct: 7032 ccttggtgatgatctttttg 7013
>gb|AC154324.2| Mus musculus BAC clone RP24-494E12 from chromosome 14, complete sequence Length = 198197 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 529 tatggaacagtgccatatct 548 |||||||||||||||||||| Sbjct: 61704 tatggaacagtgccatatct 61685
>gb|AC183102.3| Pan troglodytes BAC clone CH251-717M1 from chromosome 3, complete sequence Length = 172268 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 428 ctttcactttccatggcctctgctcaag 455 ||||||||||||||| ||| |||||||| Sbjct: 51187 ctttcactttccatgacctgtgctcaag 51160
>gb|AC007120.6| Arabidopsis thaliana chromosome 2 clone T15D9 map mi421, complete sequence Length = 102331 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 ccttggtgatgatctttttg 137 |||||||||||||||||||| Sbjct: 33842 ccttggtgatgatctttttg 33861
>gb|AC006918.9| Arabidopsis thaliana chromosome 2 clone F18P14 map ve013, complete sequence Length = 104292 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 ccttggtgatgatctttttg 137 |||||||||||||||||||| Sbjct: 57490 ccttggtgatgatctttttg 57471
>gb|AC007488.15| Homo sapiens 3q27 BAC RP11-246B7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 146443 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 ccttggtgatgatctttttg 137 |||||||||||||||||||| Sbjct: 77270 ccttggtgatgatctttttg 77289
>ref|NM_078908.2| Drosophila melanogaster Tetraspanin 42Ef CG12845-RA (Tsp42Ef), mRNA Length = 1345 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 267 ctgctgcttgtcctttggggatac 290 |||||| ||||||||||||||||| Sbjct: 542 ctgctggttgtcctttggggatac 565
>gb|AY070898.1| Drosophila melanogaster RE01312 full length cDNA Length = 1362 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 267 ctgctgcttgtcctttggggatac 290 |||||| ||||||||||||||||| Sbjct: 542 ctgctggttgtcctttggggatac 565
>gb|AC008569.7| Homo sapiens chromosome 19 clone CTC-548K16, complete sequence Length = 227245 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 ttatctagattcagacactg 86 |||||||||||||||||||| Sbjct: 184531 ttatctagattcagacactg 184512
>gb|AC022511.22|AC022511 Homo sapiens 12 BAC RP11-71J4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 133350 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 ccttggtgatgatctttttg 137 |||||||||||||||||||| Sbjct: 53228 ccttggtgatgatctttttg 53209
>gb|AC008288.8|AC008288 Drosophila melanogaster, chromosome 2R, region 42E-42E, BAC clone BACR36G11, complete sequence Length = 174751 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 267 ctgctgcttgtcctttggggatac 290 |||||| ||||||||||||||||| Sbjct: 39959 ctgctggttgtcctttggggatac 39936
>gb|AC009342.5|AC009342 Drosophila melanogaster, chromosome 2R, region 42E-43A, BAC clone BACR29G01, complete sequence Length = 165855 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 267 ctgctgcttgtcctttggggatac 290 |||||| ||||||||||||||||| Sbjct: 110938 ctgctggttgtcctttggggatac 110961
>gb|AC020571.9| Homo sapiens BAC clone RP11-387H5 from 2, complete sequence Length = 165106 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 135 ttggggatgaggttgaggaggcac 158 ||||||||||||| |||||||||| Sbjct: 125156 ttggggatgaggtggaggaggcac 125133
>gb|AF042089.1|AF042089 Homo sapiens chromosome 3, olfactory receptor pseudogene cluster 1, complete sequence, and myosin light chain kinase (MLCK) pseudogene, partial sequence Length = 106926 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 428 ctttcactttccatggcctctgctcaag 455 ||||||||||||||| ||| |||||||| Sbjct: 86278 ctttcactttccatgacctgtgctcaag 86251
>gb|AC006380.2|AC006380 Homo sapiens BAC clone RP11-463M14 from 7q15.1-p13, complete sequence Length = 120429 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 ccttggtgatgatctttttg 137 |||||||||||||||||||| Sbjct: 101242 ccttggtgatgatctttttg 101261
>gb|AC098811.3| Papio anubis clone RP41-367L14, complete sequence Length = 182644 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 ccttggtgatgatctttttg 137 |||||||||||||||||||| Sbjct: 123949 ccttggtgatgatctttttg 123968
>gb|AC078815.22| Homo sapiens 12q BAC RP11-766N7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 163475 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 ccttggtgatgatctttttg 137 |||||||||||||||||||| Sbjct: 87766 ccttggtgatgatctttttg 87785
>gb|AF147261.1|F21I2 Arabidopsis thaliana BAC F21I2 Length = 94905 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 ccttggtgatgatctttttg 137 |||||||||||||||||||| Sbjct: 48235 ccttggtgatgatctttttg 48216
>gb|AE003842.4| Drosophila melanogaster chromosome 2R, section 8 of 73 of the complete sequence Length = 231065 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 267 ctgctgcttgtcctttggggatac 290 |||||| ||||||||||||||||| Sbjct: 8057 ctgctggttgtcctttggggatac 8080
>dbj|AP001021.5| Homo sapiens genomic DNA, chromosome 18 clone:RP11-793A3, complete sequence Length = 222596 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 ccttggtgatgatctttttg 137 |||||||||||||||||||| Sbjct: 166917 ccttggtgatgatctttttg 166936
>dbj|AP005228.3| Homo sapiens genomic DNA, chromosome 18 clone:RP11-119P12, complete sequence Length = 186978 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 ccttggtgatgatctttttg 137 |||||||||||||||||||| Sbjct: 8998 ccttggtgatgatctttttg 9017
>dbj|AP006376.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT23D08, TM0220, complete sequence Length = 70687 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 384 cattatttgaggtattggat 403 |||||||||||||||||||| Sbjct: 57900 cattatttgaggtattggat 57881
>gb|AC168046.7| Mus musculus chromosome 8, clone RP24-335A7, complete sequence Length = 160659 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 ctgctgcttgtcctttgggg 286 |||||||||||||||||||| Sbjct: 135420 ctgctgcttgtcctttgggg 135401
>dbj|AP003532.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-822P1, complete sequences Length = 204928 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 ccttggtgatgatctttttg 137 |||||||||||||||||||| Sbjct: 150954 ccttggtgatgatctttttg 150935 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,749,682 Number of Sequences: 3902068 Number of extensions: 4749682 Number of successful extensions: 110254 Number of sequences better than 10.0: 64 Number of HSP's better than 10.0 without gapping: 65 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 110017 Number of HSP's gapped (non-prelim): 227 length of query: 629 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 606 effective length of database: 17,143,297,704 effective search space: 10388838408624 effective search space used: 10388838408624 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)