ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal31b01 |
|---|---|
| Clone Library Name | barley_pub |
>LOLA4_DROME (Q867Z4) Longitudinals lacking protein, isoforms F/I/K/T| Length = 970 Score = 32.0 bits (71), Expect = 1.2 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 8/103 (7%) Frame = +1 Query: 187 CNGLILQQLVPVSLSTQQDQPHLNQPTVYR-------TQNQCHPEHRQAQTFXXXXXXXX 345 C + +++++P + + PH + ++ +Q H EH Q Sbjct: 568 CELINIKKIIPATTTIATHHPHTSSTIIHPHHIIQHVSQEPHHQEHHQQH---------- 617 Query: 346 XXXXXXRPQTV-VEVPPITSQAPEFYIQAQHHWQHQTVQDVHS 471 QT+ +E P TSQ + Q QHH Q QTVQ H+ Sbjct: 618 --------QTIHIEEVPQTSQQ---HHQQQHHHQLQTVQPTHT 649
>POLR_TYMVC (P28477) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1844 Score = 30.8 bits (68), Expect = 2.6 Identities = 11/33 (33%), Positives = 20/33 (60%) Frame = +2 Query: 272 TVRKINVIRSTGRPKHFNLHRSLCSRRPRTLGH 370 T+++I++ +TG P HF+ + L +P GH Sbjct: 854 TIKRIDITHTTGPPSHFSPGKRLLGSQPSAKGH 886
>POLR_TYMVA (P20128) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1844 Score = 30.8 bits (68), Expect = 2.6 Identities = 11/33 (33%), Positives = 20/33 (60%) Frame = +2 Query: 272 TVRKINVIRSTGRPKHFNLHRSLCSRRPRTLGH 370 T+++I++ +TG P HF+ + L +P GH Sbjct: 854 TIKRIDITHTTGPPSHFSPGKRLLGSQPSAKGH 886
>POLR_TYMV (P10358) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1844 Score = 30.8 bits (68), Expect = 2.6 Identities = 11/33 (33%), Positives = 20/33 (60%) Frame = +2 Query: 272 TVRKINVIRSTGRPKHFNLHRSLCSRRPRTLGH 370 T+++I++ +TG P HF+ + L +P GH Sbjct: 854 TIKRIDITHTTGPPSHFSPGKRLLGSQPSAKGH 886
>LEUNG_ARATH (Q9FUY2) Transcriptional corepressor LEUNIG| Length = 931 Score = 30.4 bits (67), Expect = 3.4 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +1 Query: 235 QQDQPHLNQPTVYRTQNQCHPEHRQAQT 318 QQ Q H NQP + Q Q P+H+Q T Sbjct: 151 QQQQQHQNQPPSQQQQQQSTPQHQQQPT 178
>TISD_HUMAN (P47974) Butyrate response factor 2 (TIS11D protein) (EGF-response| factor 2) (ERF-2) Length = 492 Score = 30.0 bits (66), Expect = 4.5 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 5/75 (6%) Frame = +3 Query: 258 PTYCLPYAKSMSSGAQAGPNISTCTAVYAAAGPEPSATDCS*GTP-----YN*SGTGVLH 422 PT P S SS + + S+C++ AA+ P + T C+ Y G L Sbjct: 283 PTSRTPPPPSCSSASSCSSSASSCSSASAASTPSGAPTCCASAAAAAALLYGTGGAEDLL 342 Query: 423 PSSAPLATSNSPGCS 467 AP A +S C+ Sbjct: 343 APGAPCAACSSASCA 357
>VID21_NEUCR (Q7SBU6) Chromatin modification-related protein vid-21| Length = 2189 Score = 29.6 bits (65), Expect = 5.9 Identities = 17/53 (32%), Positives = 22/53 (41%) Frame = +1 Query: 160 QSPAMQFQSCNGLILQQLVPVSLSTQQDQPHLNQPTVYRTQNQCHPEHRQAQT 318 Q P Q Q ++ QQ QQ QP Q + Q P+H+Q QT Sbjct: 1339 QQPQQQGQVQQQVVSQQQQQQHQPQQQQQPQQQQQLQQQQPQQQQPQHQQVQT 1391
>LYAM2_MOUSE (Q00690) E-selectin precursor (Endothelial leukocyte adhesion| molecule 1) (ELAM-1) (Leukocyte-endothelial cell adhesion molecule 2) (LECAM2) (CD62E antigen) Length = 612 Score = 29.6 bits (65), Expect = 5.9 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 5/75 (6%) Frame = +3 Query: 153 CYAVSCYAIPKLQRAYSTATCACLFEYPTRSA---TLEPTYCL--PYAKSMSSGAQAGPN 317 C AV+C AIP+ Q + + + + E +S+ T E ++ L P S+ Q P Sbjct: 300 CKAVTCDAIPQPQNGFVSCSHSTAGELAFKSSCNFTCEQSFTLQGPAQVECSAQGQWTPQ 359 Query: 318 ISTCTAVYAAAGPEP 362 I C AV A P Sbjct: 360 IPVCKAVQCEALSAP 374
>KRA13_HUMAN (Q8IUG1) Keratin-associated protein 1-3 (Keratin-associated protein| 1.8) (Keratin-associated protein 1.9) Length = 177 Score = 29.3 bits (64), Expect = 7.7 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 7/55 (12%) Frame = -1 Query: 251 CG*SCWVLKETGTSCCRISPLQLWNCIAGDCVAFTWC-------SGTSASSCFAP 108 CG SC TSCC+ S + +C C ++C SGT +SSC P Sbjct: 20 CGSSCCQPSCCETSCCQPSCCET-SCCQPSCCQTSFCGFPSFSTSGTCSSSCCQP 73
>CIZ1_HUMAN (Q9ULV3) Cip1-interacting zinc finger protein (Nuclear protein| NP94) Length = 898 Score = 29.3 bits (64), Expect = 7.7 Identities = 32/140 (22%), Positives = 53/140 (37%), Gaps = 4/140 (2%) Frame = +1 Query: 37 DPAQKSEGTAPSVFMARENDGSFPGAKHELALVPLHQVNA---TQSPAMQFQSCNGLILQ 207 +P + SE A + + E P + ++ P ++ TQ+P + ++ +L Sbjct: 250 EPCEASELPAKRLRSSEEPTEKEPPGQLQVKAQPQARMTVPKQTQTPDLLPEALEAQVLP 309 Query: 208 QLVPVSLSTQQDQPHLNQPTVYRTQNQCHPE-HRQAQTFXXXXXXXXXXXXXXRPQTVVE 384 + P L Q QP + T Q P+ +QAQT +PQ E Sbjct: 310 RFQPRVLQVQAQVQSQTQPRIPSTDTQVQPKLQKQAQT-QTSPEHLVLQQKQVQPQLQQE 368 Query: 385 VPPITSQAPEFYIQAQHHWQ 444 P P+ +Q Q H Q Sbjct: 369 AEPQKQVQPQ--VQPQAHSQ 386
>KRA55_HUMAN (Q701N2) Keratin-associated protein 5-5 (Keratin-associated protein| 5.5) (Ultrahigh sulfur keratin-associated protein 5.5) (Keratin-associated protein 5-11) (Keratin-associated protein 5.11) Length = 221 Score = 28.9 bits (63), Expect = 10.0 Identities = 29/99 (29%), Positives = 36/99 (36%), Gaps = 5/99 (5%) Frame = -1 Query: 389 GTSTTVCGR-GFWACGCIDCGAG*NVWACLCSG*H*FCVR*TVGWFKCG*SCWVLKETGT 213 G S CG G GC CG G C G C C C G+ Sbjct: 107 GVSKGACGSCGGSKGGCGSCG-GSKGGCGSCGGSKGGCGSYGCSQCSCCKPCCCSSGCGS 165 Query: 212 SCCRISPLQLWNCIAG---DCVAFTWC-SGTSASSCFAP 108 SCC+ S + + C + C F+ C S SSC+ P Sbjct: 166 SCCQSSCCKPYCCQSSCCKPCSCFSGCGSSCCQSSCYKP 204
>KRA51_HUMAN (Q6L8H4) Keratin-associated protein 5-1 (Keratin-associated protein| 5.1) (Ultrahigh sulfur keratin-associated protein 5.1) Length = 278 Score = 28.9 bits (63), Expect = 10.0 Identities = 27/99 (27%), Positives = 35/99 (35%), Gaps = 4/99 (4%) Frame = -1 Query: 392 GGTSTTVCGRGFWACGCIDCGAG*NVWACLCSG*H*FCVR*TVGWFKCG*SCWVLKETGT 213 GG + +G GC CG+G V C CS CG G+ Sbjct: 185 GGCGSCGGSKGGCGSGCGGCGSGCGVPVCCCS------------CSSCGSCAGSKGGCGS 232 Query: 212 SCCRISPLQLWNCIAG---DCVAFTWCSG-TSASSCFAP 108 SC + S + C +G C + C S SSC P Sbjct: 233 SCSQCSCCKPCCCSSGCGSSCCQSSCCKPCCSQSSCCVP 271
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 28.9 bits (63), Expect = 10.0 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 10/83 (12%) Frame = +3 Query: 249 TLEPTYCLPYAKSMSSGAQAGPNISTCTAVYAAAGPEP----------SATDCS*GTPYN 398 TL P Y Y + + A +G N++T ++++ G +A + TP Sbjct: 222 TLGPQYLALYLQLLQQTASSG-NLNTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTP-- 278 Query: 399 *SGTGVLHPSSAPLATSNSPGCS 467 SGT L SS+PL+ S G S Sbjct: 279 -SGTNALTTSSSPLSVLTSSGSS 300
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 28.9 bits (63), Expect = 10.0 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 10/83 (12%) Frame = +3 Query: 249 TLEPTYCLPYAKSMSSGAQAGPNISTCTAVYAAAGPEP----------SATDCS*GTPYN 398 TL P Y Y + + A +G N++T ++++ G +A + TP Sbjct: 222 TLGPQYLALYLQLLQQTASSG-NLNTLSSLHPMGGLNAMQLQNLAALAAAASAAQNTP-- 278 Query: 399 *SGTGVLHPSSAPLATSNSPGCS 467 SGT L SS+PL+ S G S Sbjct: 279 -SGTNALTTSSSPLSVLTSSGSS 300
>RPOA_PRRSL (Q04561) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:| Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha papain-like cysteine proteinase (EC 3.4.22.-) (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase (EC 3.4.22.-) (PCP Length = 3859 Score = 28.9 bits (63), Expect = 10.0 Identities = 14/44 (31%), Positives = 19/44 (43%) Frame = -1 Query: 173 IAGDCVAFTWCSGTSASSCFAPGKLPSFSLAIKTDGAVPSLFCA 42 + G A WCS + + PG + S L + DG LF A Sbjct: 1492 VCGRGTADPWCSNPFSYPTYGPGVVCSSRLCVSADGVTLPLFSA 1535
>MUC1_YEAST (P08640) Mucin-like protein 1 precursor| Length = 1367 Score = 28.9 bits (63), Expect = 10.0 Identities = 27/107 (25%), Positives = 41/107 (38%), Gaps = 2/107 (1%) Frame = +3 Query: 234 PTRSATLEPTYC-LPYAKSMSSGAQAGPNISTCTAVYAAAGPEPSA-TDCS*GTPYN*SG 407 P S+T E + +P S ++ + + P S+ T +A P PS+ T S P Sbjct: 472 PVTSSTTESSSAPVPTPSSSTTESSSAPVTSSTTESSSAPVPTPSSSTTESSSAPAPTPS 531 Query: 408 TGVLHPSSAPLATSNSPGCSLXXXXXXXXXXXXXXXXVPQHATSSSS 548 + SSAP+ +S + S V T SSS Sbjct: 532 SSTTESSSAPVTSSTTESSSAPVPTPSSSTTESSSTPVTSSTTESSS 578 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,174,098 Number of Sequences: 219361 Number of extensions: 1483451 Number of successful extensions: 4037 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3828 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4024 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4430660157 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
