| Clone Name | baal31b01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC113333.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1115_B06, complete sequence Length = 139139 Score = 182 bits (92), Expect = 8e-43 Identities = 242/292 (82%) Strand = Plus / Plus Query: 41 ctgcacaaaagagtgaaggtactgccccatcagtttttatggccagggaaaatgatggca 100 ||||||| || || ||||||||||| ||||||||| ||||| | | ||||| ||| |||| Sbjct: 90752 ctgcacagaaaagcgaaggtactgctccatcagttcttatgacaaaggaaattgacggca 90811 Query: 101 gcttcccaggtgcaaaacacgagctcgcacttgtcccgctgcaccaagtaaatgctacgc 160 || | |||| ||||||||| ||||| || ||||| || ||||| |||||||||||| | | Sbjct: 90812 gcatgccagttgcaaaacatgagcttgcccttgtgcctctgcatcaagtaaatgctgccc 90871 Query: 161 agtctcctgctatgcaattccaaagttgcaacgggcttattctacagcaacttgtgcctg 220 | ||||||||||||||||||||||||||||| |||||| |||| |||||||| || || | Sbjct: 90872 aatctcctgctatgcaattccaaagttgcaatgggcttgttctgcagcaactggtcccag 90931 Query: 221 tctctttgagtacccaacaagatcagccacacttgaaccaacctactgtttaccgtacgc 280 |||| ||||| || |||||||| |||| ||| |||||||| | || | ||| ||| || Sbjct: 90932 tctcattgagcactcaacaagaccagcagcacatgaaccaagccaccttgtactgtatgc 90991 Query: 281 aaaatcaatgtcatccggagcacaggcaggcccaaacatttcaacctgcacc 332 ||| ||| |||| |||||||||||||||||| |||||||||||||||| Sbjct: 90992 aaacccaagctcatgttgagcacaggcaggcccaaccatttcaacctgcacc 91043
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 182 bits (92), Expect = 8e-43 Identities = 242/292 (82%) Strand = Plus / Plus Query: 41 ctgcacaaaagagtgaaggtactgccccatcagtttttatggccagggaaaatgatggca 100 ||||||| || || ||||||||||| ||||||||| ||||| | | ||||| ||| |||| Sbjct: 27726194 ctgcacagaaaagcgaaggtactgctccatcagttcttatgacaaaggaaattgacggca 27726253 Query: 101 gcttcccaggtgcaaaacacgagctcgcacttgtcccgctgcaccaagtaaatgctacgc 160 || | |||| ||||||||| ||||| || ||||| || ||||| |||||||||||| | | Sbjct: 27726254 gcatgccagttgcaaaacatgagcttgcccttgtgcctctgcatcaagtaaatgctgccc 27726313 Query: 161 agtctcctgctatgcaattccaaagttgcaacgggcttattctacagcaacttgtgcctg 220 | ||||||||||||||||||||||||||||| |||||| |||| |||||||| || || | Sbjct: 27726314 aatctcctgctatgcaattccaaagttgcaatgggcttgttctgcagcaactggtcccag 27726373 Query: 221 tctctttgagtacccaacaagatcagccacacttgaaccaacctactgtttaccgtacgc 280 |||| ||||| || |||||||| |||| ||| |||||||| | || | ||| ||| || Sbjct: 27726374 tctcattgagcactcaacaagaccagcagcacatgaaccaagccaccttgtactgtatgc 27726433 Query: 281 aaaatcaatgtcatccggagcacaggcaggcccaaacatttcaacctgcacc 332 ||| ||| |||| |||||||||||||||||| |||||||||||||||| Sbjct: 27726434 aaacccaagctcatgttgagcacaggcaggcccaaccatttcaacctgcacc 27726485
>ref|NM_191978.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1986 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 205 cagcaacttgtgcctgtctctttgagtacccaacaagatcagc 247 |||||||| ||||||||||||||||| || |||| |||||||| Sbjct: 1009 cagcaactagtgcctgtctctttgagcacacaaccagatcagc 1051
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 205 cagcaacttgtgcctgtctctttgagtacccaacaagatcagc 247 |||||||| ||||||||||||||||| || |||| |||||||| Sbjct: 27625565 cagcaactagtgcctgtctctttgagcacacaaccagatcagc 27625523
>dbj|AP003264.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0485G01 Length = 167203 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 205 cagcaacttgtgcctgtctctttgagtacccaacaagatcagc 247 |||||||| ||||||||||||||||| || |||| |||||||| Sbjct: 34131 cagcaactagtgcctgtctctttgagcacacaaccagatcagc 34089
>dbj|AP003223.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0007F06 Length = 150817 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 205 cagcaacttgtgcctgtctctttgagtacccaacaagatcagc 247 |||||||| ||||||||||||||||| || |||| |||||||| Sbjct: 92859 cagcaactagtgcctgtctctttgagcacacaaccagatcagc 92817
>dbj|AK101605.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033051L23, full insert sequence Length = 1675 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 205 cagcaacttgtgcctgtctctttgagtacccaacaagatcagc 247 |||||||| ||||||||||||||||| || |||| |||||||| Sbjct: 391 cagcaactagtgcctgtctctttgagcacacaaccagatcagc 433
>emb|Z83120.1|CER06A4 Caenorhabditis elegans Cosmid R06A4, complete sequence Length = 36633 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 172 atgcaattccaaagttgcaacg 193 |||||||||||||||||||||| Sbjct: 482 atgcaattccaaagttgcaacg 503
>ref|NM_064583.2| Caenorhabditis elegans R06A4.8 (R06A4.8) mRNA, complete cds Length = 4543 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 172 atgcaattccaaagttgcaacg 193 |||||||||||||||||||||| Sbjct: 3946 atgcaattccaaagttgcaacg 3925
>ref|XM_362886.1| Magnaporthe grisea 70-15 predicted protein (MG08551.4) partial cds Length = 1752 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 507 acaacagcagcagtaccacaacatg 531 |||||||||||||||| |||||||| Sbjct: 198 acaacagcagcagtacaacaacatg 222
>ref|NM_119690.1| Arabidopsis thaliana unknown protein AT4G35240 mRNA, complete cds Length = 2487 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 500 aggtggcacaacagcagcag 519 |||||||||||||||||||| Sbjct: 1410 aggtggcacaacagcagcag 1391
>gb|AC154025.12| Mus musculus 6 BAC RP24-539J4 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 165821 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 gcctgtctctttgagtaccc 235 |||||||||||||||||||| Sbjct: 146461 gcctgtctctttgagtaccc 146480
>gb|AC073297.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-167N24, complete sequence Length = 96335 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 500 aggtggcacaacagcagcag 519 |||||||||||||||||||| Sbjct: 25730 aggtggcacaacagcagcag 25711
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 481 caacaacaaccacagcccca 500 |||||||||||||||||||| Sbjct: 23753649 caacaacaaccacagcccca 23753668
>gb|AC144948.3| Mus musculus BAC clone RP23-119D7 from chromosome 6, complete sequence Length = 213811 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 313 caaacatttcaacctgcacc 332 |||||||||||||||||||| Sbjct: 91801 caaacatttcaacctgcacc 91820
>emb|X61638.1|HSWIGEX10 Human Wilms tumor gene 1, exon 10 Length = 1863 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 aacttgtgcctgtctctttg 228 |||||||||||||||||||| Sbjct: 173 aacttgtgcctgtctctttg 192
>gb|DQ083333.1| Danio rerio iron regulatory protein 2 mRNA, partial cds Length = 740 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 495 gccccaggtggcacaacagcagcagtac 522 ||||| ||||||| |||||||||||||| Sbjct: 580 gcccctggtggcagaacagcagcagtac 607
>emb|CR383667.11| Zebrafish DNA sequence from clone CH211-229P19 in linkage group 10, complete sequence Length = 121560 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 524 acaacatgcaacaagttcca 543 |||||||||||||||||||| Sbjct: 86467 acaacatgcaacaagttcca 86486
>emb|AL356218.22| Human DNA sequence from clone RP11-311H10 on chromosome 9 Contains the 3' end of the NFX1 gene for X-box binding nuclear transcription factor 1, the AQP7 and AQP3 genes for aquaporin 7 and 3, a novel gene, the gene for nucleolar RNA-associated protein alpha, beta and gamma and a CpG island, complete sequence Length = 142839 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 451 acagtccaggatgttcactc 470 |||||||||||||||||||| Sbjct: 83194 acagtccaggatgttcactc 83213
>emb|AL049692.13|HSDJ74J1 Human DNA sequence from clone RP1-74J1 on chromosome 11p13 Contains a gene for Wilms' tumor associated protein, the WT1 (Wilms tumor 1) gene, ESTs, STSs, GSSs and CpG Islands, complete sequence Length = 127580 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 aacttgtgcctgtctctttg 228 |||||||||||||||||||| Sbjct: 100208 aacttgtgcctgtctctttg 100227
>emb|AL161587.2|ATCHRIV83 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83 Length = 197859 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 500 aggtggcacaacagcagcag 519 |||||||||||||||||||| Sbjct: 27365 aggtggcacaacagcagcag 27384
>emb|AL022604.1|ATF23E12 Arabidopsis thaliana DNA chromosome 4, BAC clone F23E12 (ESSA project) Length = 86710 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 500 aggtggcacaacagcagcag 519 |||||||||||||||||||| Sbjct: 75986 aggtggcacaacagcagcag 75967
>emb|BX296538.9| Zebrafish DNA sequence from clone DKEY-275P19 in linkage group 25, complete sequence Length = 192787 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 495 gccccaggtggcacaacagcagcagtac 522 ||||| ||||||| |||||||||||||| Sbjct: 68787 gcccctggtggcagaacagcagcagtac 68814
>gb|AC097062.2| Homo sapiens chromosome 1 clone RP11-428D12, complete sequence Length = 185700 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 aaatgatggcagcttcccag 109 |||||||||||||||||||| Sbjct: 61794 aaatgatggcagcttcccag 61775
>gb|AC097469.2| Homo sapiens BAC clone RP11-55N4 from 4, complete sequence Length = 191883 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 166 cctgctatgcaattccaaagttgc 189 ||||||||||| |||||||||||| Sbjct: 179894 cctgctatgcagttccaaagttgc 179871
>gb|AC092390.3| Oryza sativa chromosome 3 BAC OSJNBb0013K08 genomic sequence, complete sequence Length = 120116 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 481 caacaacaaccacagcccca 500 |||||||||||||||||||| Sbjct: 85703 caacaacaaccacagcccca 85722
>emb|CR389803.1| Gallus gallus finished cDNA, clone ChEST273n21 Length = 1218 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 507 acaacagcagcagtaccaca 526 |||||||||||||||||||| Sbjct: 214 acaacagcagcagtaccaca 195
>gb|DQ083949.1| Homo sapiens aquaporin 3 (AQP3) gene, complete cds Length = 13709 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 451 acagtccaggatgttcactc 470 |||||||||||||||||||| Sbjct: 12864 acagtccaggatgttcactc 12845
>gb|AC092226.1|AC092226 Drosophila melanogaster, chromosome 2L, region 32A-32B, BAC clone BACR20O15, complete sequence Length = 169210 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 gcaaggcaacaacaaccaca 494 |||||||||||||||||||| Sbjct: 88722 gcaaggcaacaacaaccaca 88703
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 481 caacaacaaccacagcccca 500 |||||||||||||||||||| Sbjct: 23746677 caacaacaaccacagcccca 23746696
>gb|AY245105.1| Homo sapiens Wilms tumor 1 (WT1) gene, complete cds Length = 50678 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 aacttgtgcctgtctctttg 228 |||||||||||||||||||| Sbjct: 48202 aacttgtgcctgtctctttg 48221
>gb|AC164654.3| Gallus gallus BAC clone CH261-5H7 from chromosome unknown, complete sequence Length = 250515 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 cagccgcaggcccagaaccc 362 |||||||||||||||||||| Sbjct: 169671 cagccgcaggcccagaaccc 169652
>gb|AC153642.7| Mus musculus 6 BAC RP23-334E23 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 227781 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 gcctgtctctttgagtaccc 235 |||||||||||||||||||| Sbjct: 217288 gcctgtctctttgagtaccc 217269
>gb|AE003630.2| Drosophila melanogaster chromosome 2L, section 39 of 83 of the complete sequence Length = 289460 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 gcaaggcaacaacaaccaca 494 |||||||||||||||||||| Sbjct: 282320 gcaaggcaacaacaaccaca 282301
>gb|AC005117.1|AC005117 Drosophila melanogaster, chromosome 2L, region 32D1-32D2, P1 clone DS04313, complete sequence Length = 69019 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 gcaaggcaacaacaaccaca 494 |||||||||||||||||||| Sbjct: 24292 gcaaggcaacaacaaccaca 24273
>emb|CR392035.10| Zebrafish DNA sequence from clone CH211-184N9 in linkage group 1, complete sequence Length = 110627 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 atcagccacacttgaaccaa 261 |||||||||||||||||||| Sbjct: 40341 atcagccacacttgaaccaa 40322
>gb|M80232.1|HUMWT110 Human Wilms' tumor assocated protein (WT1) gene, exon 10 and complete cds Length = 362 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 aacttgtgcctgtctctttg 228 |||||||||||||||||||| Sbjct: 150 aacttgtgcctgtctctttg 169 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,383,363 Number of Sequences: 3902068 Number of extensions: 4383363 Number of successful extensions: 90650 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 90516 Number of HSP's gapped (non-prelim): 134 length of query: 548 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 525 effective length of database: 17,143,297,704 effective search space: 9000231294600 effective search space used: 9000231294600 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)