>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 472

 Score = 84.3 bits (207), Expect = 2e-16
 Identities = 48/102 (47%), Positives = 64/102 (62%), Gaps = 7/102 (6%)
 Frame = +1

Query: 310 LGKEADNMNIAVGARSGIVDDLF-----VGKFLGRDSDIVFDYRQKATRKFEY--LQGDY 468
           L K+  +  + +    G+VD LF      G  +   S   F+Y  +  RK++   + GD+
Sbjct: 72  LAKDFSDDQLDIRRGKGMVDSLFQAPADAGTHVPIQSS--FEYESQGLRKYDIDNMLGDF 129

Query: 469 YIAPAFLDKVAIHIVKNFLANNLNIKIPLILGVWGGKGQGKT 594
           YIAPAF+DK+ +HI KNFL N  NIKIPLILGVWGGKGQGK+
Sbjct: 130 YIAPAFMDKLVVHITKNFL-NLPNIKIPLILGVWGGKGQGKS 170

>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 408

 Score = 77.0 bits (188), Expect = 4e-14
 Identities = 41/82 (50%), Positives = 55/82 (67%), Gaps = 4/82 (4%)
 Frame = +1

Query: 361 IVDDLFVGKF-LGRDSDIVF---DYRQKATRKFEYLQGDYYIAPAFLDKVAIHIVKNFLA 528
           +VDDLF G F  G   + V    +Y  ++   F  ++  +YI+PAFLDK+ IHI KNF+ 
Sbjct: 65  MVDDLFQGGFGAGGTHNAVLSSQEYLSQSRASFNNIEDGFYISPAFLDKMTIHIAKNFM- 123

Query: 529 NNLNIKIPLILGVWGGKGQGKT 594
           +   IK+PLILG+WGGKGQGKT
Sbjct: 124 DLPKIKVPLILGIWGGKGQGKT 145

>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
           chloroplast precursor (RuBisCO activase A) (RA A)
          Length = 464

 Score = 75.9 bits (185), Expect = 8e-14
 Identities = 43/95 (45%), Positives = 59/95 (62%), Gaps = 5/95 (5%)
 Frame = +1

Query: 325 DNMNIAVGARSGIVDDLFVGKFLGRDSDIV---FDYRQKATRKFEY--LQGDYYIAPAFL 489
           D  +I  G   GIVD LF         + V   ++Y  +  RK+++    G +YIAPAF+
Sbjct: 71  DQQDITRG--KGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFM 128

Query: 490 DKVAIHIVKNFLANNLNIKIPLILGVWGGKGQGKT 594
           DK+ +H+ KNF+    NIKIPLILG+WGGKGQGK+
Sbjct: 129 DKLVVHLSKNFMTLP-NIKIPLILGIWGGKGQGKS 162

>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 439

 Score = 74.7 bits (182), Expect = 2e-13
 Identities = 41/93 (44%), Positives = 56/93 (60%), Gaps = 3/93 (3%)
 Frame = +1

Query: 325 DNMNIAVGARSGIVDDLFVGKFLGRDSDIV---FDYRQKATRKFEYLQGDYYIAPAFLDK 495
           D  +I  G   G+VD LF           V   ++Y     R+ + ++  +YIAPAFLDK
Sbjct: 85  DQQDITRG--KGMVDPLFQAPMDAGTHYAVMSSYEYLSTGLRQLDNIKDGFYIAPAFLDK 142

Query: 496 VAIHIVKNFLANNLNIKIPLILGVWGGKGQGKT 594
           + +HI KNF+    NIK+PLILG+WGGKGQGK+
Sbjct: 143 LVVHITKNFMTLP-NIKVPLILGIWGGKGQGKS 174

>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,|
           chloroplast precursor (RuBisCO activase B) (RA B)
          Length = 425

 Score = 72.4 bits (176), Expect = 9e-13
 Identities = 40/95 (42%), Positives = 57/95 (60%), Gaps = 5/95 (5%)
 Frame = +1

Query: 325 DNMNIAVGARSGIVDDLFVGKFLGRDSDIV---FDYRQKATRKFEY--LQGDYYIAPAFL 489
           D  +I  G   GIVD LF         + +   ++Y  +  RK+++       YIAPAF+
Sbjct: 69  DQQDITRG--KGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFM 126

Query: 490 DKVAIHIVKNFLANNLNIKIPLILGVWGGKGQGKT 594
           DK+ +H+ KNF+    NIK+PLILG+WGGKGQGK+
Sbjct: 127 DKLIVHLAKNFMTLP-NIKVPLILGIWGGKGQGKS 160

>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 459

 Score = 72.4 bits (176), Expect = 9e-13
 Identities = 46/96 (47%), Positives = 61/96 (63%), Gaps = 6/96 (6%)
 Frame = +1

Query: 325 DNMNIAVGARSGIVDDLFVGKF-LGRDSDIV--FDYRQKATRKFEY---LQGDYYIAPAF 486
           D  +IA G   G+VD LF      G    I+  ++Y  +A + ++    L G +YIAPAF
Sbjct: 80  DQQDIARG--KGLVDSLFQAPTGTGTHHAIMNSYEYVSQALKTYQLDNKLDG-FYIAPAF 136

Query: 487 LDKVAIHIVKNFLANNLNIKIPLILGVWGGKGQGKT 594
           +DK+ +HI KNFL    NIK+PLILGVWGGKGQGK+
Sbjct: 137 MDKLVVHITKNFLTLP-NIKVPLILGVWGGKGQGKS 171

>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
           (RubisCO activase beta form)
          Length = 435

 Score = 72.0 bits (175), Expect = 1e-12
 Identities = 43/95 (45%), Positives = 57/95 (60%), Gaps = 5/95 (5%)
 Frame = +1

Query: 325 DNMNIAVGARSGIVDDLFVGKFLGRDSDIV---FDYRQKATRKF--EYLQGDYYIAPAFL 489
           D  +I  G   G+VD LF           V   +DY  +  R++  +     +YIAPAF+
Sbjct: 81  DQQDITRG--KGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFM 138

Query: 490 DKVAIHIVKNFLANNLNIKIPLILGVWGGKGQGKT 594
           DK+ +HI KNFL+   NIKIPLILG+WGGKGQGK+
Sbjct: 139 DKLVVHITKNFLSLP-NIKIPLILGIWGGKGQGKS 172

>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 413

 Score = 72.0 bits (175), Expect = 1e-12
 Identities = 43/95 (45%), Positives = 57/95 (60%), Gaps = 5/95 (5%)
 Frame = +1

Query: 325 DNMNIAVGARSGIVDDLFVGKF-LGRDSDIV--FDYRQKATRKFEYLQG--DYYIAPAFL 489
           D  +I  G   G+ D LF      G  + ++  ++Y     R + Y      +YIAPAF+
Sbjct: 78  DQQDITRG--KGLADPLFQAPMGTGTHNAVLSSYEYISAGLRDYSYDNNVDGFYIAPAFM 135

Query: 490 DKVAIHIVKNFLANNLNIKIPLILGVWGGKGQGKT 594
           DK+ +HIVKNFL    NIK+PLILGVWGGKGQGK+
Sbjct: 136 DKLTVHIVKNFLTLP-NIKVPLILGVWGGKGQGKS 169

>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 441

 Score = 72.0 bits (175), Expect = 1e-12
 Identities = 41/95 (43%), Positives = 57/95 (60%), Gaps = 5/95 (5%)
 Frame = +1

Query: 325 DNMNIAVGARSGIVDDLFVGKF-LGRDSDIVFDYRQKATR----KFEYLQGDYYIAPAFL 489
           D  +I  G   G+VD LF      G    ++  ++  +       F+ ++  +YIAPAFL
Sbjct: 85  DQQDITRG--KGLVDSLFQAPMDAGTHYAVISSHKYLSAGLRQYNFDNIKDGFYIAPAFL 142

Query: 490 DKVAIHIVKNFLANNLNIKIPLILGVWGGKGQGKT 594
           DK+ +HI KNF+    NIK+PLILGVWGGKGQGK+
Sbjct: 143 DKLVVHIAKNFMTLP-NIKVPLILGVWGGKGQGKS 176

>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
           (RubisCO activase alpha form)
          Length = 476

 Score = 72.0 bits (175), Expect = 1e-12
 Identities = 43/95 (45%), Positives = 57/95 (60%), Gaps = 5/95 (5%)
 Frame = +1

Query: 325 DNMNIAVGARSGIVDDLFVGKFLGRDSDIV---FDYRQKATRKF--EYLQGDYYIAPAFL 489
           D  +I  G   G+VD LF           V   +DY  +  R++  +     +YIAPAF+
Sbjct: 81  DQQDITRG--KGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFM 138

Query: 490 DKVAIHIVKNFLANNLNIKIPLILGVWGGKGQGKT 594
           DK+ +HI KNFL+   NIKIPLILG+WGGKGQGK+
Sbjct: 139 DKLVVHITKNFLSLP-NIKIPLILGIWGGKGQGKS 172

>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 432

 Score = 72.0 bits (175), Expect = 1e-12
 Identities = 40/95 (42%), Positives = 57/95 (60%), Gaps = 5/95 (5%)
 Frame = +1

Query: 325 DNMNIAVGARSGIVDDLFVGKFLGRDSDIV---FDYRQKATRKFEY--LQGDYYIAPAFL 489
           D  +I  G   G VD LF         + V   ++Y  +  R +++    G +YIAP+F+
Sbjct: 72  DQQDITRG--KGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPSFM 129

Query: 490 DKVAIHIVKNFLANNLNIKIPLILGVWGGKGQGKT 594
           DK+ +HI KNF+    NIK+PLILG+WGGKGQGK+
Sbjct: 130 DKLVVHISKNFMTLP-NIKVPLILGIWGGKGQGKS 163

>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 474

 Score = 70.5 bits (171), Expect = 4e-12
 Identities = 40/95 (42%), Positives = 59/95 (62%), Gaps = 5/95 (5%)
 Frame = +1

Query: 325 DNMNIAVGARSGIVDDLFVGKF-LGRDSDIV--FDYRQKATRKF--EYLQGDYYIAPAFL 489
           D  +I  G   G+VD +F      G    ++  ++Y  +  R++  + +   +YIAPAF+
Sbjct: 81  DQQDITRG--KGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLRQYNLDNMMDGFYIAPAFM 138

Query: 490 DKVAIHIVKNFLANNLNIKIPLILGVWGGKGQGKT 594
           DK+ +HI KNFL    NIK+PLILG+WGGKGQGK+
Sbjct: 139 DKLVVHITKNFLTLP-NIKVPLILGIWGGKGQGKS 172

>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
          Length = 439

 Score = 69.7 bits (169), Expect = 6e-12
 Identities = 44/96 (45%), Positives = 60/96 (62%), Gaps = 6/96 (6%)
 Frame = +1

Query: 325 DNMNIAVGARSGIVDDLFVGKF-LGRDSDIV--FDYRQKATRKFEY---LQGDYYIAPAF 486
           D  +IA G   G+VD LF      G    ++  ++Y  +  R++     L G +YIAP+F
Sbjct: 85  DQQDIARG--KGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNMDNTLDG-FYIAPSF 141

Query: 487 LDKVAIHIVKNFLANNLNIKIPLILGVWGGKGQGKT 594
           +DK+ +HI KNFL    NIK+PLILGVWGGKGQGK+
Sbjct: 142 MDKLVVHITKNFLKLP-NIKVPLILGVWGGKGQGKS 176

>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
          Length = 442

 Score = 68.9 bits (167), Expect = 1e-11
 Identities = 43/96 (44%), Positives = 59/96 (61%), Gaps = 6/96 (6%)
 Frame = +1

Query: 325 DNMNIAVGARSGIVDDLFVGKF-LGRDSDIV--FDYRQKATRKFEY---LQGDYYIAPAF 486
           D  +I  G   G+VD LF      G    ++  ++Y  +  R++     L G +YIAPAF
Sbjct: 85  DQQDITRG--KGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNLDNKLDG-FYIAPAF 141

Query: 487 LDKVAIHIVKNFLANNLNIKIPLILGVWGGKGQGKT 594
           +DK+ +HI KNFL    NIK+PLILG+WGGKGQGK+
Sbjct: 142 MDKLVVHITKNFLKLP-NIKVPLILGIWGGKGQGKS 176

>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 437

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 42/95 (44%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
 Frame = +1

Query: 325 DNMNIAVGARSGIVDDLFVG-KFLGRDSDIVFDYRQKATR----KFEYLQGDYYIAPAFL 489
           D  +I  G   G VD LF   +  G    I+  Y   +T      F+     YYIAPAF+
Sbjct: 81  DQQDITRG--KGKVDSLFQAPQGSGTHFAIMSSYEYISTGLRQYNFDNNMDGYYIAPAFM 138

Query: 490 DKVAIHIVKNFLANNLNIKIPLILGVWGGKGQGKT 594
           DK+ +HI KNF+    N+K+PLILG+WGGKGQGK+
Sbjct: 139 DKLVVHITKNFMTLP-NMKVPLILGIWGGKGQGKS 172

>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 433

 Score = 67.4 bits (163), Expect = 3e-11
 Identities = 37/96 (38%), Positives = 58/96 (60%), Gaps = 6/96 (6%)
 Frame = +1

Query: 325 DNMNIAVGARSGIVDDLFVGKFLGRDSDIV----FDYRQKATRKFEY--LQGDYYIAPAF 486
           D  +I  G   G+VD+LF    +G  + +     +DY  +  + + +  +   +YIA  F
Sbjct: 77  DQQDITRG--KGLVDNLFQAP-MGDGTHVAVLSSYDYISQGQKSYNFDNMMDGFYIAKGF 133

Query: 487 LDKVAIHIVKNFLANNLNIKIPLILGVWGGKGQGKT 594
           +DK+ +H+ KNF+    NIK+PLILG+WGGKGQGK+
Sbjct: 134 MDKLVVHLSKNFMTLP-NIKVPLILGIWGGKGQGKS 168

>RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 415

 Score = 60.5 bits (145), Expect = 4e-09
 Identities = 28/43 (65%), Positives = 35/43 (81%)
 Frame = +1

Query: 466 YYIAPAFLDKVAIHIVKNFLANNLNIKIPLILGVWGGKGQGKT 594
           YYIAP FLDK+A+HI KNFL N   +++PLILG+ G KG+GKT
Sbjct: 3   YYIAPRFLDKLAVHITKNFL-NLPGVRVPLILGIHGRKGEGKT 44

>RCA_ANASP (P58555) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 414

 Score = 60.5 bits (145), Expect = 4e-09
 Identities = 28/43 (65%), Positives = 35/43 (81%)
 Frame = +1

Query: 466 YYIAPAFLDKVAIHIVKNFLANNLNIKIPLILGVWGGKGQGKT 594
           YYIAP FLDK+A+HI KNFL N   +++PLILG+ G KG+GKT
Sbjct: 3   YYIAPRFLDKLAVHITKNFL-NIPGVRVPLILGIHGRKGEGKT 44

>ARGB_METAC (Q8THJ9) Acetylglutamate kinase (EC 2.7.2.8) (NAG kinase) (AGK)|
           (N-acetyl-L-glutamate 5-phosphotransferase)
          Length = 299

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
 Frame = +1

Query: 316 KEADNMNIAVGARSGIVDDLFVGKFLGRDSDIVFDYRQKATRKFEYL--QGDYYIAPAFL 489
           K   N  ++      I+ D+ + +++G    IV     + T K E +  + +++      
Sbjct: 27  KVGGNAMVSTQIMEDIIKDIVLLRYVGIKPVIVHGGGPEITEKMERMGKKAEFFQGLRIT 86

Query: 490 DKVAIHIVKNFLANNLNIKIPLILGVWGGKGQGKT 594
           D   + I +  L  N+N KI  ++G++GGKG G T
Sbjct: 87  DDETMEIARMVLVGNINTKIVSLIGIFGGKGVGFT 121

>ARGB_METMA (Q8PXJ8) Acetylglutamate kinase (EC 2.7.2.8) (NAG kinase) (AGK)|
           (N-acetyl-L-glutamate 5-phosphotransferase)
          Length = 292

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
 Frame = +1

Query: 316 KEADNMNIAVGARSGIVDDLFVGKFLGRDSDIVFDYRQKATRKFEYL--QGDYYIAPAFL 489
           K   N  ++      I+ D+ + +++G    IV     + T K E +  + +++      
Sbjct: 27  KVGGNAMVSAQIMEDIIKDIVLLRYVGIKPVIVHGGGPEITEKMERMGKKAEFFQGLRIT 86

Query: 490 DKVAIHIVKNFLANNLNIKIPLILGVWGGKGQGKT 594
           D   + I +  L  N+N KI  ++G++GGKG G T
Sbjct: 87  DDETMEIARMVLVGNINTKIVSLIGLFGGKGVGFT 121

>LEU2_RHILO (Q98EF1) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)|
           (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI)
          Length = 469

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 12/81 (14%)
 Frame = -3

Query: 579 LSAPDTKYKGNLDIKIICKE----VLYNVDRNFIEE-----GGRYVVISLQVLKFPRRLL 427
           +SAP T Y    D  ++ ++     L  +DR+ + E         + +S + ++ P + L
Sbjct: 1   MSAPRTLYDKIFDDHVVDRQDDGTCLLYIDRHLVHEVTSPQAFEGLRLSGRKVRHPEKTL 60

Query: 426 TVIEHDIRVSPEE---FSNEE 373
            V++H++  SPE      NEE
Sbjct: 61  AVVDHNVSTSPERKFGIKNEE 81


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,351,660
Number of Sequences: 219361
Number of extensions: 1061475
Number of successful extensions: 3352
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 3277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3334
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5196311029
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)