| Clone Name | baal31a09 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X92402.1|HVALEVDEH H.vulgare mRNA for aminolevulinate dehydratase Length = 1815 Score = 93.7 bits (47), Expect = 5e-16 Identities = 146/179 (81%) Strand = Plus / Plus Query: 40 agatcaggcccctcgacatggcgaagcgccctcgccagaaccggaggtcgccggcgctcc 99 |||||||||| ||||||||||||||||| ||||| | ||||| ||||||||||| || Sbjct: 581 agatcaggcctctcgacatggcgaagcgtcctcgtcgcaaccgcaggtcgccggctctta 640 Query: 100 gggcagcgttccaggagaccagcattactcccgcgaacctcgtcatccctctgttcatcc 159 |||| || ||||||||||| ||||| | ||||| || | || |||| ||||||||| Sbjct: 641 gggctgcattccaggagacaagcatctcgcccgctaatttggtgctcccattgttcatcc 700 Query: 160 atgaaggtgaagaagacacttccattggagctatgcctgggtgcttcaggcttggatgg 218 ||||||| ||||| || || | ||||| || |||||||| ||||| |||||||||||| Sbjct: 701 atgaaggggaagaggatgctccaattggcgccatgcctggttgctttaggcttggatgg 759 Score = 71.9 bits (36), Expect = 2e-09 Identities = 63/72 (87%) Strand = Plus / Plus Query: 429 cacgggatgttggtgttaacagctttgtgctattcccaaaggttcctgatggtttaaaga 488 |||| |||||||||||||||||||||||||| || ||||||||||| |||| || ||| Sbjct: 791 cacgcgatgttggtgttaacagctttgtgctctttccaaaggttccggatgcattgaagt 850 Query: 489 ctcaaacaggag 500 ||| |||||||| Sbjct: 851 ctccaacaggag 862
>dbj|AK119551.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-E09, full insert sequence Length = 1581 Score = 85.7 bits (43), Expect = 1e-13 Identities = 154/191 (80%) Strand = Plus / Plus Query: 40 agatcaggcccctcgacatggcgaagcgccctcgccagaaccggaggtcgccggcgctcc 99 |||||||||| || ||| || | ||||||||||| | ||||| |||||||| || || Sbjct: 336 agatcaggcctcttgacttgacaaagcgccctcgtcgcaaccgcaggtcgcctgctctta 395 Query: 100 gggcagcgttccaggagaccagcattactcccgcgaacctcgtcatccctctgttcatcc 159 |||| || ||||||||||||| ||| | || || || | || |||| |||||||||| Sbjct: 396 gggccgcattccaggagaccaccatctcacctgccaatttggtgctcccgctgttcatcc 455 Query: 160 atgaaggtgaagaagacacttccattggagctatgcctgggtgcttcaggcttggatgga 219 ||||||| ||||| || || | |||||||||||||||||||||| |||||||| |||| Sbjct: 456 atgaaggggaagatgatgctcctattggagctatgcctgggtgctataggcttggttgga 515 Query: 220 ggcacgggctt 230 |||| |||||| Sbjct: 516 ggcatgggctt 526 Score = 71.9 bits (36), Expect = 2e-09 Identities = 78/92 (84%) Strand = Plus / Plus Query: 417 aggtttacaaatcacgggatgttggtgttaacagctttgtgctattcccaaaggttcctg 476 |||| ||||| || || ||||||||||||||||| |||||||| || ||||| ||||||| Sbjct: 534 aggtctacaagtctcgtgatgttggtgttaacagttttgtgctgtttccaaaagttcctg 593 Query: 477 atggtttaaagactcaaacaggagatgaggca 508 ||| || ||| ||||| | |||||||||||| Sbjct: 594 atgcattgaagtctcaatctggagatgaggca 625
>dbj|AK101836.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069C18, full insert sequence Length = 1688 Score = 85.7 bits (43), Expect = 1e-13 Identities = 154/191 (80%) Strand = Plus / Plus Query: 40 agatcaggcccctcgacatggcgaagcgccctcgccagaaccggaggtcgccggcgctcc 99 |||||||||| || ||| || | ||||||||||| | ||||| |||||||| || || Sbjct: 443 agatcaggcctcttgacttgacaaagcgccctcgtcgcaaccgcaggtcgcctgctctta 502 Query: 100 gggcagcgttccaggagaccagcattactcccgcgaacctcgtcatccctctgttcatcc 159 |||| || ||||||||||||| ||| | || || || | || |||| |||||||||| Sbjct: 503 gggccgcattccaggagaccaccatctcacctgccaatttggtgctcccgctgttcatcc 562 Query: 160 atgaaggtgaagaagacacttccattggagctatgcctgggtgcttcaggcttggatgga 219 ||||||| ||||| || || | |||||||||||||||||||||| |||||||| |||| Sbjct: 563 atgaaggggaagatgatgctcctattggagctatgcctgggtgctataggcttggttgga 622 Query: 220 ggcacgggctt 230 |||| |||||| Sbjct: 623 ggcatgggctt 633 Score = 71.9 bits (36), Expect = 2e-09 Identities = 78/92 (84%) Strand = Plus / Plus Query: 417 aggtttacaaatcacgggatgttggtgttaacagctttgtgctattcccaaaggttcctg 476 |||| ||||| || || ||||||||||||||||| |||||||| || ||||| ||||||| Sbjct: 641 aggtctacaagtctcgtgatgttggtgttaacagttttgtgctgtttccaaaagttcctg 700 Query: 477 atggtttaaagactcaaacaggagatgaggca 508 ||| || ||| ||||| | |||||||||||| Sbjct: 701 atgcattgaagtctcaatctggagatgaggca 732
>dbj|AK065784.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013042O12, full insert sequence Length = 1589 Score = 85.7 bits (43), Expect = 1e-13 Identities = 154/191 (80%) Strand = Plus / Plus Query: 40 agatcaggcccctcgacatggcgaagcgccctcgccagaaccggaggtcgccggcgctcc 99 |||||||||| || ||| || | ||||||||||| | ||||| |||||||| || || Sbjct: 344 agatcaggcctcttgacttgacaaagcgccctcgtcgcaaccgcaggtcgcctgctctta 403 Query: 100 gggcagcgttccaggagaccagcattactcccgcgaacctcgtcatccctctgttcatcc 159 |||| || ||||||||||||| ||| | || || || | || |||| |||||||||| Sbjct: 404 gggccgcattccaggagaccaccatctcacctgccaatttggtgctcccgctgttcatcc 463 Query: 160 atgaaggtgaagaagacacttccattggagctatgcctgggtgcttcaggcttggatgga 219 ||||||| ||||| || || | |||||||||||||||||||||| |||||||| |||| Sbjct: 464 atgaaggggaagatgatgctcctattggagctatgcctgggtgctataggcttggttgga 523 Query: 220 ggcacgggctt 230 |||| |||||| Sbjct: 524 ggcatgggctt 534 Score = 71.9 bits (36), Expect = 2e-09 Identities = 78/92 (84%) Strand = Plus / Plus Query: 417 aggtttacaaatcacgggatgttggtgttaacagctttgtgctattcccaaaggttcctg 476 |||| ||||| || || ||||||||||||||||| |||||||| || ||||| ||||||| Sbjct: 542 aggtctacaagtctcgtgatgttggtgttaacagttttgtgctgtttccaaaagttcctg 601 Query: 477 atggtttaaagactcaaacaggagatgaggca 508 ||| || ||| ||||| | |||||||||||| Sbjct: 602 atgcattgaagtctcaatctggagatgaggca 633
>gb|M71235.1|PEAALAD Pisum sativum aminolevulinic acid dehydratase (alad) mRNA, 3' end Length = 1458 Score = 71.9 bits (36), Expect = 2e-09 Identities = 78/92 (84%) Strand = Plus / Plus Query: 150 ctgttcatccatgaaggtgaagaagacacttccattggagctatgcctgggtgcttcagg 209 ||||| || ||||||||||| || || || | ||||| ||||||||||| |||| |||| Sbjct: 308 ctgtttatacatgaaggtgaggaggatacccctattggggctatgcctggatgctacagg 367 Query: 210 cttggatggaggcacgggcttttggaagaggt 241 ||||| ||||| ||||| |||||||||||||| Sbjct: 368 cttggttggagacacggacttttggaagaggt 399 Score = 56.0 bits (28), Expect = 1e-04 Identities = 64/76 (84%) Strand = Plus / Plus Query: 429 cacgggatgttggtgttaacagctttgtgctattcccaaaggttcctgatggtttaaaga 488 |||||||||||||||||||||| ||||||| ||||| || |||| |||| ||| |||| Sbjct: 408 cacgggatgttggtgttaacagtgttgtgctcttccccaaaattccagatgctttgaaga 467 Query: 489 ctcaaacaggagatga 504 | | ||||||||||| Sbjct: 468 cccccacaggagatga 483
>gb|AY106833.1| Zea mays PCO065721 mRNA sequence Length = 1186 Score = 69.9 bits (35), Expect = 8e-09 Identities = 68/79 (86%) Strand = Plus / Plus Query: 151 tgttcatccatgaaggtgaagaagacacttccattggagctatgcctgggtgcttcaggc 210 |||| ||||||||||| |||||||| || | || ||||||||||| ||||||| |||| Sbjct: 99 tgtttatccatgaaggagaagaagatgctcctatcggagctatgccagggtgctataggc 158 Query: 211 ttggatggaggcacgggct 229 |||| |||||||||||||| Sbjct: 159 ttgggtggaggcacgggct 177 Score = 40.1 bits (20), Expect = 6.9 Identities = 71/88 (80%) Strand = Plus / Plus Query: 417 aggtttacaaatcacgggatgttggtgttaacagctttgtgctattcccaaaggttcctg 476 |||||||||| | || |||||||||||||| || ||||| || || || || ||||| | Sbjct: 186 aggtttacaaggcccgcgatgttggtgttaatagttttgttctctttcctaaagttcccg 245 Query: 477 atggtttaaagactcaaacaggagatga 504 ||| || ||| ||| |||||||||||| Sbjct: 246 atgcattgaagtctccaacaggagatga 273
>gb|U04525.1|GMU04525 Glycine max delta-aminolevulinic acid dehydratase (Alad) mRNA, complete cds Length = 1543 Score = 65.9 bits (33), Expect = 1e-07 Identities = 75/89 (84%) Strand = Plus / Plus Query: 153 ttcatccatgaaggtgaagaagacacttccattggagctatgcctgggtgcttcaggctt 212 ||||| || ||||||||||| || ||| | ||||| ||||||||||| |||| ||||||| Sbjct: 366 ttcattcacgaaggtgaagaggatactccaattggggctatgcctggatgctacaggctt 425 Query: 213 ggatggaggcacgggcttttggaagaggt 241 || |||||||| || ||| | |||||||| Sbjct: 426 gggtggaggcatggacttgtagaagaggt 454 Score = 48.1 bits (24), Expect = 0.028 Identities = 63/76 (82%) Strand = Plus / Plus Query: 429 cacgggatgttggtgttaacagctttgtgctattcccaaaggttcctgatggtttaaaga 488 ||||||||||||||||||| || ||||||| ||||| || |||| |||| ||| ||| Sbjct: 463 cacgggatgttggtgttaatagtgttgtgctcttccccaaaattccagatgctttgaagt 522 Query: 489 ctcaaacaggagatga 504 ||| ||||||||||| Sbjct: 523 ctcccacaggagatga 538
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 63.9 bits (32), Expect = 5e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 183 attggagctatgcctgggtgcttcaggcttggatggaggcacgggctt 230 |||||||||||||||||||||| |||||||| |||||||| |||||| Sbjct: 29244911 attggagctatgcctgggtgctataggcttggttggaggcatgggctt 29244864 Score = 63.9 bits (32), Expect = 5e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 416 caggtttacaaatcacgggatgttggtgttaacagctttgtgctattcccaaaggttcct 475 ||||| ||||| || || ||||||||||||||||| |||||||| || ||||| |||||| Sbjct: 29244670 caggtctacaagtctcgtgatgttggtgttaacagttttgtgctgtttccaaaagttcct 29244611 Query: 476 gatg 479 |||| Sbjct: 29244610 gatg 29244607 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 145 tccctctgttcatccatgaaggtg 168 |||| ||||||||||||||||||| Sbjct: 29245034 tcccgctgttcatccatgaaggtg 29245011
>dbj|AP003761.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0018H04 Length = 142053 Score = 63.9 bits (32), Expect = 5e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 183 attggagctatgcctgggtgcttcaggcttggatggaggcacgggctt 230 |||||||||||||||||||||| |||||||| |||||||| |||||| Sbjct: 7709 attggagctatgcctgggtgctataggcttggttggaggcatgggctt 7662 Score = 63.9 bits (32), Expect = 5e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 416 caggtttacaaatcacgggatgttggtgttaacagctttgtgctattcccaaaggttcct 475 ||||| ||||| || || ||||||||||||||||| |||||||| || ||||| |||||| Sbjct: 7468 caggtctacaagtctcgtgatgttggtgttaacagttttgtgctgtttccaaaagttcct 7409 Query: 476 gatg 479 |||| Sbjct: 7408 gatg 7405 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 145 tccctctgttcatccatgaaggtg 168 |||| ||||||||||||||||||| Sbjct: 7832 tcccgctgttcatccatgaaggtg 7809
>ref|NM_105642.2| Arabidopsis thaliana porphobilinogen synthase AT1G69740 mRNA, complete cds Length = 1648 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 153 ttcatccatgaaggtgaagaagacacttccattggagctatgcctgggtgcttcaggctt 212 ||||| ||||||||||| |||||||| | |||||||||||||| || |||| ||| ||| Sbjct: 511 ttcattcatgaaggtgaggaagacacgcctattggagctatgcccggttgctacagactt 570 Query: 213 ggatggaggca 223 || |||||||| Sbjct: 571 ggctggaggca 581
>gb|AY113941.1| Arabidopsis thaliana putative aminolevulinate dehydratase (At1g69740) mRNA, complete cds Length = 1324 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 153 ttcatccatgaaggtgaagaagacacttccattggagctatgcctgggtgcttcaggctt 212 ||||| ||||||||||| |||||||| | |||||||||||||| || |||| ||| ||| Sbjct: 406 ttcattcatgaaggtgaggaagacacgcctattggagctatgcccggttgctacagactt 465 Query: 213 ggatggaggca 223 || |||||||| Sbjct: 466 ggctggaggca 476
>gb|AF327428.1| Arabidopsis thaliana putative aminolevulinate dehydratase (At1g69740) mRNA, complete cds Length = 1421 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 153 ttcatccatgaaggtgaagaagacacttccattggagctatgcctgggtgcttcaggctt 212 ||||| ||||||||||| |||||||| | |||||||||||||| || |||| ||| ||| Sbjct: 435 ttcattcatgaaggtgaggaagacacgcctattggagctatgcccggttgctacagactt 494 Query: 213 ggatggaggca 223 || |||||||| Sbjct: 495 ggctggaggca 505
>gb|AY128711.1| Arabidopsis thaliana putative aminolevulinate dehydratase (At1g69740) mRNA, complete cds Length = 1380 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 153 ttcatccatgaaggtgaagaagacacttccattggagctatgcctgggtgcttcaggctt 212 ||||| ||||||||||| |||||||| | |||||||||||||| || |||| ||| ||| Sbjct: 406 ttcattcatgaaggtgaggaagacacgcctattggagctatgcccggttgctacagactt 465 Query: 213 ggatggaggca 223 || |||||||| Sbjct: 466 ggctggaggca 476
>gb|AY120705.1| Arabidopsis thaliana putative aminolevulinate dehydratase (At1g69740) mRNA, complete cds Length = 1404 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 153 ttcatccatgaaggtgaagaagacacttccattggagctatgcctgggtgcttcaggctt 212 ||||| ||||||||||| |||||||| | |||||||||||||| || |||| ||| ||| Sbjct: 435 ttcattcatgaaggtgaggaagacacgcctattggagctatgcccggttgctacagactt 494 Query: 213 ggatggaggca 223 || |||||||| Sbjct: 495 ggctggaggca 505
>gb|AY081254.1| Arabidopsis thaliana putative aminolevulinate dehydratase (At1g69740) mRNA, complete cds Length = 1470 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 153 ttcatccatgaaggtgaagaagacacttccattggagctatgcctgggtgcttcaggctt 212 ||||| ||||||||||| |||||||| | |||||||||||||| || |||| ||| ||| Sbjct: 477 ttcattcatgaaggtgaggaagacacgcctattggagctatgcccggttgctacagactt 536 Query: 213 ggatggaggca 223 || |||||||| Sbjct: 537 ggctggaggca 547
>gb|AF361803.1| Arabidopsis thaliana At1g69740/T6C23_6 mRNA, complete cds Length = 1530 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 153 ttcatccatgaaggtgaagaagacacttccattggagctatgcctgggtgcttcaggctt 212 ||||| ||||||||||| |||||||| | |||||||||||||| || |||| ||| ||| Sbjct: 471 ttcattcatgaaggtgaggaagacacgcctattggagctatgcccggttgctacagactt 530 Query: 213 ggatggaggca 223 || |||||||| Sbjct: 531 ggctggaggca 541
>gb|AY059154.1| Arabidopsis thaliana At1g69740/T6C23_6 mRNA, complete cds Length = 1293 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 153 ttcatccatgaaggtgaagaagacacttccattggagctatgcctgggtgcttcaggctt 212 ||||| ||||||||||| |||||||| | |||||||||||||| || |||| ||| ||| Sbjct: 406 ttcattcatgaaggtgaggaagacacgcctattggagctatgcccggttgctacagactt 465 Query: 213 ggatggaggca 223 || |||||||| Sbjct: 466 ggctggaggca 476
>emb|BX814487.1|CNS0AC9F Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB76ZG02 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1423 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 153 ttcatccatgaaggtgaagaagacacttccattggagctatgcctgggtgcttcaggctt 212 ||||| ||||||||||| |||||||| | |||||||||||||| || |||| ||| ||| Sbjct: 396 ttcattcatgaaggtgaggaagacacgcctattggagctatgcccggttgctacagactt 455 Query: 213 ggatggaggca 223 || |||||||| Sbjct: 456 ggctggaggca 466
>emb|BX816538.1|CNS0ABQM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH54ZC06 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1432 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 153 ttcatccatgaaggtgaagaagacacttccattggagctatgcctgggtgcttcaggctt 212 ||||| ||||||||||| |||||||| | |||||||||||||| || |||| ||| ||| Sbjct: 459 ttcattcatgaaggtgaggaagacacgcctattggagctatgcccggttgctacagactt 518 Query: 213 ggatggaggca 223 || |||||||| Sbjct: 519 ggctggaggca 529
>gb|AF332195.1|AF332195 Raphanus sativus aminolevulinate dehydratase (alad) mRNA, complete cds Length = 1598 Score = 58.0 bits (29), Expect = 3e-05 Identities = 74/89 (83%) Strand = Plus / Plus Query: 153 ttcatccatgaaggtgaagaagacacttccattggagctatgcctgggtgcttcaggctt 212 ||||| ||||||||||| || ||||| | |||||||||||||| || |||| |||||| Sbjct: 454 ttcattcatgaaggtgaggaggacacgcctattggagctatgcccggttgctataggctt 513 Query: 213 ggatggaggcacgggcttttggaagaggt 241 || |||||||| || ||||| ||||||| Sbjct: 514 ggctggaggcatggccttttacaagaggt 542
>gb|BT012992.1| Lycopersicon esculentum clone 114212R, mRNA sequence Length = 1700 Score = 54.0 bits (27), Expect = 5e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 159 catgaaggtgaagaagacacttccattggagctatgcctgggtgcttcaggcttggatgg 218 ||||| |||||||| ||||| | |||||||| |||||||| || | |||||||||||| Sbjct: 427 catgagggtgaagaggacacacctattggagcaatgcctggatgttataggcttggatgg 486 Query: 219 aggcacgggcttttggaagaggt 241 ||||| || ||| | |||||||| Sbjct: 487 aggcatggtcttgttgaagaggt 509
>emb|BX816100.1|CNS0ABKQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH27ZH06 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1483 Score = 54.0 bits (27), Expect = 5e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 153 ttcatccatgaaggtgaagaagacacttccattggagctatgcctgggtgcttcaggctt 212 ||||| ||||||||||| |||||||| | |||||||| ||||| || |||| ||| ||| Sbjct: 447 ttcattcatgaaggtgaggaagacacgcctattggagcgatgcccggttgctacagactt 506 Query: 213 ggatggaggca 223 || |||||||| Sbjct: 507 ggctggaggca 517
>gb|L31367.1|TOMAADEHYD Lycopersicon esculentum aminolevulinic acid dehydratase mRNA Length = 1757 Score = 54.0 bits (27), Expect = 5e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 159 catgaaggtgaagaagacacttccattggagctatgcctgggtgcttcaggcttggatgg 218 ||||| |||||||| ||||| | |||||||| |||||||| || | |||||||||||| Sbjct: 463 catgagggtgaagaggacacacctattggagcaatgcctggatgttataggcttggatgg 522 Query: 219 aggcacgggcttttggaagaggt 241 ||||| || ||| | |||||||| Sbjct: 523 aggcatggtcttgttgaagaggt 545
>dbj|AP004495.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT08B24, TM0027, complete sequence Length = 87135 Score = 52.0 bits (26), Expect = 0.002 Identities = 65/78 (83%) Strand = Plus / Plus Query: 164 aggtgaagaagacacttccattggagctatgcctgggtgcttcaggcttggatggaggca 223 |||||| |||||||| | ||||| ||||||||||| |||| ||||||||| ||||| || Sbjct: 73864 aggtgaggaagacacaccaattggggctatgcctggatgctacaggcttggttggagaca 73923 Query: 224 cgggcttttggaagaggt 241 || ||| || ||||||| Sbjct: 73924 tggacttgtgcaagaggt 73941
>gb|AC140916.17| Medicago truncatula clone mth2-12b2, complete sequence Length = 133358 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Plus Query: 429 cacgggatgttggtgttaacagctttgtgctattccc 465 |||||||||||||||||||||| ||||||| ||||| Sbjct: 15382 cacgggatgttggtgttaacagtgttgtgctcttccc 15418
>gb|AC013289.11|AC013289 Arabidopsis thaliana chromosome 1 BAC T6C23 genomic sequence, complete sequence Length = 87148 Score = 48.1 bits (24), Expect = 0.028 Identities = 51/60 (85%) Strand = Plus / Minus Query: 164 aggtgaagaagacacttccattggagctatgcctgggtgcttcaggcttggatggaggca 223 |||||| |||||||| | |||||||||||||| || |||| ||| ||||| |||||||| Sbjct: 37798 aggtgaggaagacacgcctattggagctatgcccggttgctacagacttggctggaggca 37739
>emb|Z93780.1|FR24G11 Fugu DNA sequence from clone XX-CPS, complete sequence Length = 34807 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 271 tatgatacattaggcgattttg 292 |||||||||||||||||||||| Sbjct: 25065 tatgatacattaggcgattttg 25044
>gb|AC183679.3| Pan troglodytes BAC clone CH251-400O3 from chromosome 10, complete sequence Length = 203130 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 391 agttctgttgagctgctatttttca 415 ||||||||||||||||| ||||||| Sbjct: 69935 agttctgttgagctgctttttttca 69959
>emb|AL357520.12| Human DNA sequence from clone RP11-288D15 on chromosome 10 Contains a pseudogene similar to part of glycogen synthase kinase 3 and a ubiquitin-conjugating enzyme pseudogene, complete sequence Length = 178942 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 391 agttctgttgagctgctatttttca 415 ||||||||||||||||| ||||||| Sbjct: 38532 agttctgttgagctgctttttttca 38556
>gb|AC006225.3| Arabidopsis thaliana chromosome 2 BAC T5E7 genomic sequence, complete sequence Length = 88249 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 261 tgccttgaattatgatacatt 281 ||||||||||||||||||||| Sbjct: 75889 tgccttgaattatgatacatt 75869
>emb|BX322665.5| Zebrafish DNA sequence from clone DKEY-183N20 in linkage group 20, complete sequence Length = 192437 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 149 tctgttcatccatgaaggtgaagaa 173 ||||||||||||||||| ||||||| Sbjct: 77856 tctgttcatccatgaagatgaagaa 77832
>emb|Y08501.2|MIATGENA Arabidopsis thaliana mitochondrial genome Length = 366924 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 261 tgccttgaattatgatacatt 281 ||||||||||||||||||||| Sbjct: 56761 tgccttgaattatgatacatt 56781
>gb|AC125200.4| Mus musculus chromosome UNKNOWN clone RP23-261P9, complete sequence Length = 215697 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 cagaaacagtgcatgtgtat 347 |||||||||||||||||||| Sbjct: 129270 cagaaacagtgcatgtgtat 129289
>gb|AC124734.3| Mus musculus chromosome UNKNOWN clone RP23-306C20, complete sequence Length = 173113 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 cagaaacagtgcatgtgtat 347 |||||||||||||||||||| Sbjct: 171008 cagaaacagtgcatgtgtat 170989
>gb|AC111059.9| Mus musculus chromosome 15, clone RP24-495D8, complete sequence Length = 124519 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 ttcatccatgaaggtgaaga 172 |||||||||||||||||||| Sbjct: 83927 ttcatccatgaaggtgaaga 83908
>gb|AC140209.2| Mus musculus BAC clone RP24-472D23 from chromosome 15, complete sequence Length = 175802 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 ttcatccatgaaggtgaaga 172 |||||||||||||||||||| Sbjct: 121241 ttcatccatgaaggtgaaga 121260
>gb|AC124807.11| Mus musculus chromosome 3, clone RP23-137I13, complete sequence Length = 213113 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 tgctatttttcacaggttta 423 |||||||||||||||||||| Sbjct: 156174 tgctatttttcacaggttta 156193
>emb|AL139158.11| Human DNA sequence from clone RP5-884C9 on chromosome 1p34.1-35.3, complete sequence Length = 115614 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 484 aaagactcaaacaggagatg 503 |||||||||||||||||||| Sbjct: 106970 aaagactcaaacaggagatg 106989
>gb|AC096845.2| Takifugu rubripes clone 214J14, complete sequence Length = 134105 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 tatgatacattaggcgattt 290 |||||||||||||||||||| Sbjct: 66571 tatgatacattaggcgattt 66590
>emb|CR936417.6| Mouse DNA sequence from clone RP23-365N15 on chromosome X, complete sequence Length = 164661 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 cagaaacagtgcatgtgtat 347 |||||||||||||||||||| Sbjct: 162960 cagaaacagtgcatgtgtat 162979
>gb|AC090739.13| Homo sapiens chromosome 8, clone RP11-503E24, complete sequence Length = 189048 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 aagaaaacagttctgttgag 402 |||||||||||||||||||| Sbjct: 145230 aagaaaacagttctgttgag 145249
>gb|AC124307.3| Homo sapiens chromosome 15, clone RP11-321K15, complete sequence Length = 170807 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 398 ttgagctgctatttttcaca 417 |||||||||||||||||||| Sbjct: 69540 ttgagctgctatttttcaca 69521
>gb|AC108935.5| Homo sapiens BAC clone RP11-503L19 from 4, complete sequence Length = 133531 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 405 gctatttttcacaggtttacaaat 428 ||||||||||||||| |||||||| Sbjct: 93020 gctatttttcacaggattacaaat 92997
>dbj|AK089820.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830028N15 product:similar to ORF3 PROTEIN [Rattus norvegicus], full insert sequence Length = 2981 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 cagaaacagtgcatgtgtat 347 |||||||||||||||||||| Sbjct: 1289 cagaaacagtgcatgtgtat 1270
>gb|AC155845.3| Mus musculus 6 BAC RP24-399D24 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 145877 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 ttgaattatgatacattagg 284 |||||||||||||||||||| Sbjct: 30953 ttgaattatgatacattagg 30972
>gb|AC158667.8| Mus musculus 6 BAC RP23-83P5 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 234055 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 ttgaattatgatacattagg 284 |||||||||||||||||||| Sbjct: 184936 ttgaattatgatacattagg 184955
>gb|AC021351.4|AC021351 Homo sapiens, clone RP11-24N21, complete sequence Length = 164291 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 398 ttgagctgctatttttcaca 417 |||||||||||||||||||| Sbjct: 117338 ttgagctgctatttttcaca 117319
>emb|BX901965.5| Mouse DNA sequence from clone RP23-152A17 on chromosome X, complete sequence Length = 69398 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 cagaaacagtgcatgtgtat 347 |||||||||||||||||||| Sbjct: 50469 cagaaacagtgcatgtgtat 50488
>gb|AC068069.12|AC068069 Homo sapiens chromosome 15 clone RP11-11B2, complete sequence Length = 175036 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 398 ttgagctgctatttttcaca 417 |||||||||||||||||||| Sbjct: 34319 ttgagctgctatttttcaca 34300
>emb|BX322555.7| Zebrafish DNA sequence from clone DKEY-19D21 in linkage group 15, complete sequence Length = 209310 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 ggacattttgtccctatatt 320 |||||||||||||||||||| Sbjct: 177479 ggacattttgtccctatatt 177498
>gb|AF164138.1| Takifugu rubripes cosmid 124A22 Mdr2, Mdr3, carnitine octanoyltransferase, RNase P38, and N-myristoyltransferase 2 genes, complete cds Length = 39757 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 tatgatacattaggcgattt 290 |||||||||||||||||||| Sbjct: 27971 tatgatacattaggcgattt 27990
>gb|AC145551.5| Mus musculus BAC clone RP23-73O14 from chromosome ul, complete sequence Length = 204610 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 cagaaacagtgcatgtgtat 347 |||||||||||||||||||| Sbjct: 79471 cagaaacagtgcatgtgtat 79452
>gb|AC144715.4| Mus musculus BAC clone RP23-295N8 from chromosome unknown, complete sequence Length = 208503 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 cagaaacagtgcatgtgtat 347 |||||||||||||||||||| Sbjct: 137454 cagaaacagtgcatgtgtat 137473
>emb|BX322590.10| Mouse DNA sequence from clone RP23-14B5 on chromosome X, complete sequence Length = 223699 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 cagaaacagtgcatgtgtat 347 |||||||||||||||||||| Sbjct: 141764 cagaaacagtgcatgtgtat 141745
>dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome Length = 860631 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 169 aagaagacacttccattggagcta 192 ||||||| |||||||||||||||| Sbjct: 539193 aagaagaaacttccattggagcta 539170
>emb|CR790375.9| Zebrafish DNA sequence from clone CH211-251O16 in linkage group 4, complete sequence Length = 153499 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 gctgctatttttcacaggtt 421 |||||||||||||||||||| Sbjct: 29193 gctgctatttttcacaggtt 29212
>gb|BC084432.1| Xenopus laevis hypothetical LOC495279, mRNA (cDNA clone MGC:86484 IMAGE:5511385), complete cds Length = 5503 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 162 gaaggtgaagaagacacttccattggag 189 ||||||||||||||||||| | |||||| Sbjct: 2000 gaaggtgaagaagacacttgctttggag 2027
>gb|L26546.1|CELCBHO Caenorhabditis briggsae (cyt-1) and (ced-9) genes, complete cds. complete cds Length = 3419 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 406 ctatttttcacaggtttacaaatc 429 ||||||||| |||||||||||||| Sbjct: 1225 ctatttttctcaggtttacaaatc 1248 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,904,119 Number of Sequences: 3902068 Number of extensions: 3904119 Number of successful extensions: 72578 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72463 Number of HSP's gapped (non-prelim): 115 length of query: 508 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 486 effective length of database: 17,147,199,772 effective search space: 8333539089192 effective search space used: 8333539089192 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)