ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baal30k08 |
|---|---|
| Clone Library Name | barley_pub |
>ZN469_HUMAN (Q96JG9) Zinc finger protein 469 (Fragment)| Length = 2469 Score = 30.0 bits (66), Expect = 1.5 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%) Frame = +2 Query: 2 RHEGGEGRERHALEHVVEGGRRHVAQADAQPG-REDRSQLAAAEVLLRSATETLIFHTSN 178 R G G++ ALE + RR VA + PG EDR + +L + + H + Sbjct: 1970 RRPGAPGQKARALEGTLPSKRRRVAMPGSAPGPGEDRPPPRGSSPILSEGSLPALLHLCS 2029 Query: 179 YVLNSCT 199 V S T Sbjct: 2030 EVAPSTT 2036
>GUN5_THEFU (Q01786) Endoglucanase E-5 precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase E-4) (Cellulase E-5) (Cellulase E5) Length = 466 Score = 28.9 bits (63), Expect = 3.4 Identities = 17/59 (28%), Positives = 28/59 (47%) Frame = -2 Query: 267 YSILITKRR*KTSTVTFFLLQITVQEFST*LDVWNISVSVAERRSTSAAASWLRSSRPG 91 YS +T R +STV+ + + +T+ +T VWN + + T SW + PG Sbjct: 53 YSASVTVRNDTSSTVSQWEVVLTLPGGTTVAQVWNAQHTSSGNSHTFTGVSWNSTIPPG 111
>Y4BL_RHISN (P55379) Putative transposase y4bL/y4kJ/y4tB| Length = 516 Score = 28.5 bits (62), Expect = 4.5 Identities = 14/28 (50%), Positives = 17/28 (60%) Frame = -3 Query: 134 VPQRQLVGCDLHVRVAHRLEPHVGDHPR 51 VP R L+GC L VR+ HR+ DH R Sbjct: 356 VPHR-LIGCTLQVRLTHRVVEIFHDHQR 382
>IP5PC_ARATH (Q84W55) Type II inositol-1,4,5-trisphosphate 5-phosphatase 12 (EC| 3.1.3.36) (At5PTase12) (FRAGILE FIBER3 protein) Length = 1101 Score = 28.5 bits (62), Expect = 4.5 Identities = 14/25 (56%), Positives = 16/25 (64%) Frame = -3 Query: 134 VPQRQLVGCDLHVRVAHRLEPHVGD 60 V RQL G + V V H L+PHVGD Sbjct: 622 VGSRQLAGLLICVWVRHDLKPHVGD 646
>KRA31_SHEEP (P02446) Keratin-associated protein 3-1 (Keratin, high sulfur| matrix protein, IIIB2) Length = 97 Score = 28.1 bits (61), Expect = 5.8 Identities = 21/55 (38%), Positives = 23/55 (41%), Gaps = 3/55 (5%) Frame = +1 Query: 13 RRRPGTT-CSGA--CRRGWSPTCGSSRCATRT*RSQPTSCR*GTPPLCYRNTYIP 168 R P TT CS CR G C S C QPT C P Y +TY+P Sbjct: 11 RTGPATTICSSDKFCRCG---VCLPSTCPHNISLLQPTCCDNSPVPCVYPDTYVP 62
>LTBP1_RAT (Q00918) Latent transforming growth factor beta-binding protein 1| precursor (LTBP-1) (Transforming growth factor beta-1-binding protein 1) (TGF-beta-1-BP-1) (Transforming growth factor beta-1-masking protein, large subunit) Length = 1712 Score = 28.1 bits (61), Expect = 5.8 Identities = 10/18 (55%), Positives = 10/18 (55%) Frame = +1 Query: 34 CSGACRRGWSPTCGSSRC 87 C G C GWS GS RC Sbjct: 163 CGGQCCHGWSKAPGSQRC 180
>LTB1L_HUMAN (Q14766) Latent transforming growth factor beta-binding protein,| isoform 1L precursor (LTBP-1) (Transforming growth factor beta-1-binding protein 1) (TGF-beta1-BP-1) Length = 1595 Score = 28.1 bits (61), Expect = 5.8 Identities = 10/18 (55%), Positives = 10/18 (55%) Frame = +1 Query: 34 CSGACRRGWSPTCGSSRC 87 C G C GWS GS RC Sbjct: 170 CGGRCCHGWSKAPGSQRC 187
>KRA31_HUMAN (Q9BYR8) Keratin-associated protein 3-1 (Keratin-associated protein| 3.1) (High sulfur keratin-associated protein 3.1) Length = 98 Score = 28.1 bits (61), Expect = 5.8 Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 3/52 (5%) Frame = +1 Query: 22 PGTT-CS--GACRRGWSPTCGSSRCATRT*RSQPTSCR*GTPPLCYRNTYIP 168 P TT CS +CR G C S C QP C PP C +TY+P Sbjct: 15 PATTFCSFDKSCRCG---VCLPSTCPHEISLLQPICCDTCPPPCCKPDTYVP 63
>CD37_HUMAN (P11049) Leukocyte antigen CD37 (Tetraspanin-26) (Tspan-26)| Length = 281 Score = 27.7 bits (60), Expect = 7.6 Identities = 13/43 (30%), Positives = 27/43 (62%) Frame = -2 Query: 309 FFTKILILFISKITYSILITKRR*KTSTVTFFLLQITVQEFST 181 +F +L+LF ++IT ILI+ +R + +++ T+Q++ T Sbjct: 90 YFGMLLLLFATQITLGILISTQRAQLERSLRDVVEKTIQKYGT 132
>LRP1B_MOUSE (Q9JI18) Low-density lipoprotein receptor-related protein 1B| precursor (Low-density lipoprotein receptor-related protein-deleted in tumor) (LRP-DIT) Length = 4599 Score = 27.7 bits (60), Expect = 7.6 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = +1 Query: 118 SCR*GTPPLCYRNTYIPHVQLCTEFLHCNL*QEKCNCR 231 SCR G P CY +PH +LC C ++ +C+ Sbjct: 2551 SCRSGFKP-CYNRRCVPHGKLCDGTNDCGDSSDELDCK 2587
>LRP1B_HUMAN (Q9NZR2) Low-density lipoprotein receptor-related protein 1B| precursor (Low-density lipoprotein receptor-related protein-deleted in tumor) (LRP-DIT) Length = 4599 Score = 27.7 bits (60), Expect = 7.6 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = +1 Query: 118 SCR*GTPPLCYRNTYIPHVQLCTEFLHCNL*QEKCNCR 231 SCR G P CY IPH +LC C ++ +C+ Sbjct: 2551 SCRRGFKP-CYNRRCIPHGKLCDGENDCGDNSDELDCK 2587
>LTBP2_BOVIN (Q28019) Latent transforming growth factor beta-binding protein 2| precursor (LTBP-2) Length = 1842 Score = 27.7 bits (60), Expect = 7.6 Identities = 11/29 (37%), Positives = 14/29 (48%) Frame = +1 Query: 1 AARGRRRPGTTCSGACRRGWSPTCGSSRC 87 AARGR C G C GW+ ++ C Sbjct: 152 AARGRLTGRNVCGGQCCPGWTTANSTNHC 180
>HISX_XYLFT (Q87C29) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 431 Score = 27.7 bits (60), Expect = 7.6 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = -3 Query: 62 DHPRRHAPEHVVPGLRRPRA 3 D R+APEH++ LR+PRA Sbjct: 318 DISNRYAPEHLILALRQPRA 337
>HISX_XYLFA (Q9PBC5) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 431 Score = 27.7 bits (60), Expect = 7.6 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = -3 Query: 62 DHPRRHAPEHVVPGLRRPRA 3 D R+APEH++ LR+PRA Sbjct: 318 DISNRYAPEHLILALRQPRA 337
>SYL_BORPA (Q7W9M4) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 885 Score = 27.7 bits (60), Expect = 7.6 Identities = 14/53 (26%), Positives = 25/53 (47%) Frame = -1 Query: 283 YFKNYLQHSHNQT*VENIDSYIFPVTNYSAGIQYIIGRVEYKCFGSRAEEYLS 125 YF Y ++Q V+ + Y P+ Y GI++ + + Y F ++ LS Sbjct: 519 YFMRYTSPDNDQAMVDARNDYWMPMDQYIGGIEHAVLHLLYARFWTKVMRDLS 571
>THIE_NEIMB (Q9JXF7) Thiamine-phosphate pyrophosphorylase (EC 2.5.1.3) (TMP| pyrophosphorylase) (TMP-PPase) (Thiamine-phosphate synthase) Length = 205 Score = 27.7 bits (60), Expect = 7.6 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Frame = -1 Query: 139 EEYLSGS*LAAIFTSGLRIGLSHMSATTLDDMLQ-SMSFPAFAALVP 2 +E + + LAAI +GLR+GLS S LD L S+ A A+ P Sbjct: 84 QEDMDTADLAAIAAAGLRLGLSTHSVAELDRALSVHPSYIASGAIFP 130
>THIE_NEIMA (Q9JWI2) Thiamine-phosphate pyrophosphorylase (EC 2.5.1.3) (TMP| pyrophosphorylase) (TMP-PPase) (Thiamine-phosphate synthase) Length = 205 Score = 27.7 bits (60), Expect = 7.6 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Frame = -1 Query: 139 EEYLSGS*LAAIFTSGLRIGLSHMSATTLDDMLQ-SMSFPAFAALVP 2 +E + + LAAI +GLR+GLS S LD L S+ A A+ P Sbjct: 84 QEDMDTADLAAIAAAGLRLGLSTHSVAELDRALSVHPSYIASGAIFP 130
>LTB1L_MOUSE (Q8CG19) Latent transforming growth factor beta-binding protein,| isoform 1L precursor (LTBP-1) (Transforming growth factor beta-1-binding protein 1) (TGF-beta1-BP-1) Length = 1713 Score = 27.7 bits (60), Expect = 7.6 Identities = 10/18 (55%), Positives = 10/18 (55%) Frame = +1 Query: 34 CSGACRRGWSPTCGSSRC 87 C G C GWS GS RC Sbjct: 163 CGGQCCHGWSKPPGSQRC 180
>GLYC_HUMAN (P34896) Serine hydroxymethyltransferase, cytosolic (EC 2.1.2.1)| (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) Length = 483 Score = 27.3 bits (59), Expect = 10.0 Identities = 19/55 (34%), Positives = 22/55 (40%) Frame = +1 Query: 34 CSGACRRGWSPTCGSSRCATRT*RSQPTSCR*GTPPLCYRNTYIPHVQLCTEFLH 198 CS AC + TC R A R P+ R GTP L R Q F+H Sbjct: 380 CSIACNKN---TCPGDRSALR-----PSGLRLGTPALTSRGLLEKDFQKVAHFIH 426
>CP133_DROME (Q9VGB3) Probable cytochrome P450 313a3 (EC 1.14.-.-)| (CYPCCCXIIIA3) Length = 492 Score = 27.3 bits (59), Expect = 10.0 Identities = 15/46 (32%), Positives = 20/46 (43%) Frame = -3 Query: 143 SGGVPQRQLVGCDLHVRVAHRLEPHVGDHPRRHAPEHVVPGLRRPR 6 S GV + VG + + HR H G P P+H +P R R Sbjct: 378 SSGVVIPKGVGIGIDIFATHRNRDHWGTDPSSFNPDHFLPDNVRDR 423
>CAPP_CAUCR (Q9A871) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)| (PEPC) Length = 909 Score = 27.3 bits (59), Expect = 10.0 Identities = 15/30 (50%), Positives = 18/30 (60%) Frame = +2 Query: 59 GRRHVAQADAQPGREDRSQLAAAEVLLRSA 148 GRR A+ADAQPG E L A L++A Sbjct: 99 GRRRHAEADAQPGDERPRTLIDAVKALKAA 128
>VMSA_HBVAR (P31869) Major surface antigen| Length = 226 Score = 27.3 bits (59), Expect = 10.0 Identities = 13/31 (41%), Positives = 15/31 (48%) Frame = +1 Query: 55 GWSPTCGSSRCATRT*RSQPTSCR*GTPPLC 147 G SPTC + T PTSC PP+C Sbjct: 43 GGSPTCPGQNSQSPTSNHSPTSC----PPIC 69
>PHOR_PSEAE (P23621) Phosphate regulon sensor protein phoR (EC 2.7.13.3)| Length = 443 Score = 27.3 bits (59), Expect = 10.0 Identities = 16/44 (36%), Positives = 20/44 (45%) Frame = +2 Query: 50 VEGGRRHVAQADAQPGREDRSQLAAAEVLLRSATETLIFHTSNY 181 + GR H DA P QL +E LRSA L+F+ Y Sbjct: 301 LSAGRNHRISLDAAPA----VQLKGSEAELRSAFSNLVFNAVKY 340
>CBIO1_HALSA (Q9HMZ4) Putative cobalt import ATP-binding protein cbiO 1| Length = 232 Score = 27.3 bits (59), Expect = 10.0 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = +2 Query: 17 EGRERHALEHVVEGGRRHVAQADAQPGREDRSQLAAA 127 + R AL+ V GGRR AD G ++R +AAA Sbjct: 111 DARVADALDAVELGGRRDERVADLSGGEQERVAIAAA 147
>PEP1A_STRCO (Q9L1K2) Putative glucanohydrolase pep1A (EC 3.2.1.-)| Length = 675 Score = 27.3 bits (59), Expect = 10.0 Identities = 15/30 (50%), Positives = 17/30 (56%) Frame = +2 Query: 53 EGGRRHVAQADAQPGREDRSQLAAAEVLLR 142 EG R + A PGREDR +L AA LR Sbjct: 134 EGARLYERAAADVPGREDRRELLAAVDALR 163 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,327,935 Number of Sequences: 219361 Number of extensions: 872042 Number of successful extensions: 2343 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 2295 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2343 length of database: 80,573,946 effective HSP length: 79 effective length of database: 63,244,427 effective search space used: 1517866248 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
