ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal30j23 |
|---|---|
| Clone Library Name | barley_pub |
>PLZ12_LUPPO (P16148) Protein PPLZ12| Length = 184 Score = 72.8 bits (177), Expect = 7e-13 Identities = 35/61 (57%), Positives = 46/61 (75%) Frame = +1 Query: 412 LNLDDAFVQKNDIAKAVEDELEKAMSAYGFEIVQTLIVDIEPDAHVKQAMNEINAAARMR 591 +NLDD F QK ++AK+V +ELEK M YG+ I L+VDI PD V++AMNEINAA RM+ Sbjct: 1 MNLDDLFEQKGEVAKSVLEELEKVMGEYGYNIEHILMVDIIPDDSVRRAMNEINAAQRMQ 60 Query: 592 V 594 + Sbjct: 61 L 61
>YBBK_SHIFL (P0AA56) Hypothetical protein ybbK| Length = 305 Score = 48.5 bits (114), Expect = 1e-05 Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 1/154 (0%) Frame = +1 Query: 133 EQFGKFDSVLQPGCHCLPWIFGKRVVGHLTLRLQQLDVRC-ETKTKDNVFVTVVASIQYR 309 E+FG++ LQPG L F R+ + + Q LD+ E +KDN VT+ A + Sbjct: 32 ERFGRYTKTLQPGL-SLVVPFMDRIGRKINMMEQVLDIPSQEVISKDNANVTIDAVCFIQ 90 Query: 310 PLAGKESDAYYKLTNTRSQIQAYVFDVIRASVPKLNLDDAFVQKNDIAKAVEDELEKAMS 489 + A Y+++N I IR + + LD+ Q++ I + +++A + Sbjct: 91 VIDAPR--AAYEVSNLELAIINLTMTNIRTVLGSMELDEMLSQRDSINSRLLRIVDEATN 148 Query: 490 AYGFEIVQTLIVDIEPDAHVKQAMNEINAAARMR 591 +G ++ + I D+ P A + +MN A R + Sbjct: 149 PWGIKVTRIEIRDVRPPAELISSMNAQMKAERTK 182
>YBBK_ECOLI (P0AA53) Hypothetical protein ybbK| Length = 305 Score = 48.5 bits (114), Expect = 1e-05 Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 1/154 (0%) Frame = +1 Query: 133 EQFGKFDSVLQPGCHCLPWIFGKRVVGHLTLRLQQLDVRC-ETKTKDNVFVTVVASIQYR 309 E+FG++ LQPG L F R+ + + Q LD+ E +KDN VT+ A + Sbjct: 32 ERFGRYTKTLQPGL-SLVVPFMDRIGRKINMMEQVLDIPSQEVISKDNANVTIDAVCFIQ 90 Query: 310 PLAGKESDAYYKLTNTRSQIQAYVFDVIRASVPKLNLDDAFVQKNDIAKAVEDELEKAMS 489 + A Y+++N I IR + + LD+ Q++ I + +++A + Sbjct: 91 VIDAPR--AAYEVSNLELAIINLTMTNIRTVLGSMELDEMLSQRDSINSRLLRIVDEATN 148 Query: 490 AYGFEIVQTLIVDIEPDAHVKQAMNEINAAARMR 591 +G ++ + I D+ P A + +MN A R + Sbjct: 149 PWGIKVTRIEIRDVRPPAELISSMNAQMKAERTK 182
>YBBK_ECOL6 (P0AA54) Hypothetical protein ybbK| Length = 305 Score = 48.5 bits (114), Expect = 1e-05 Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 1/154 (0%) Frame = +1 Query: 133 EQFGKFDSVLQPGCHCLPWIFGKRVVGHLTLRLQQLDVRC-ETKTKDNVFVTVVASIQYR 309 E+FG++ LQPG L F R+ + + Q LD+ E +KDN VT+ A + Sbjct: 32 ERFGRYTKTLQPGL-SLVVPFMDRIGRKINMMEQVLDIPSQEVISKDNANVTIDAVCFIQ 90 Query: 310 PLAGKESDAYYKLTNTRSQIQAYVFDVIRASVPKLNLDDAFVQKNDIAKAVEDELEKAMS 489 + A Y+++N I IR + + LD+ Q++ I + +++A + Sbjct: 91 VIDAPR--AAYEVSNLELAIINLTMTNIRTVLGSMELDEMLSQRDSINSRLLRIVDEATN 148 Query: 490 AYGFEIVQTLIVDIEPDAHVKQAMNEINAAARMR 591 +G ++ + I D+ P A + +MN A R + Sbjct: 149 PWGIKVTRIEIRDVRPPAELISSMNAQMKAERTK 182
>YBBK_ECO57 (P0AA55) Hypothetical protein ybbK| Length = 305 Score = 48.5 bits (114), Expect = 1e-05 Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 1/154 (0%) Frame = +1 Query: 133 EQFGKFDSVLQPGCHCLPWIFGKRVVGHLTLRLQQLDVRC-ETKTKDNVFVTVVASIQYR 309 E+FG++ LQPG L F R+ + + Q LD+ E +KDN VT+ A + Sbjct: 32 ERFGRYTKTLQPGL-SLVVPFMDRIGRKINMMEQVLDIPSQEVISKDNANVTIDAVCFIQ 90 Query: 310 PLAGKESDAYYKLTNTRSQIQAYVFDVIRASVPKLNLDDAFVQKNDIAKAVEDELEKAMS 489 + A Y+++N I IR + + LD+ Q++ I + +++A + Sbjct: 91 VIDAPR--AAYEVSNLELAIINLTMTNIRTVLGSMELDEMLSQRDSINSRLLRIVDEATN 148 Query: 490 AYGFEIVQTLIVDIEPDAHVKQAMNEINAAARMR 591 +G ++ + I D+ P A + +MN A R + Sbjct: 149 PWGIKVTRIEIRDVRPPAELISSMNAQMKAERTK 182
>Y658_PYRAB (Q9V0Y1) Hypothetical protein PYRAB06580| Length = 268 Score = 46.2 bits (108), Expect = 7e-05 Identities = 43/160 (26%), Positives = 78/160 (48%), Gaps = 4/160 (2%) Frame = +1 Query: 124 AIREQFGKFDSVLQPGCHCLPWIFGKRVVGHLTLRLQQLDVRC-ETKTKDNVFVTVVASI 300 A+ + G+ PG + IF K V+ + LR Q LDV ET TKDNV V V A + Sbjct: 34 AVIFRLGRVVGARGPGLFFIIPIFEKAVI--VDLRTQVLDVPVQETITKDNVPVRVNAVV 91 Query: 301 QYRPLAGKESDAYYKLTNTRSQIQA---YVFDVIRASVPKLNLDDAFVQKNDIAKAVEDE 471 +R + D +T ++ I A +R+ + + +LD+ +++ + ++ Sbjct: 92 YFRVV-----DPVKAVTQVKNYIMATSQISQTTLRSVIGQAHLDELLSERDKLNMQLQRI 146 Query: 472 LEKAMSAYGFEIVQTLIVDIEPDAHVKQAMNEINAAARMR 591 +++A +G ++ I D+E A +++AM + A R R Sbjct: 147 IDEATDPWGIKVTAVEIKDVELPAGMQRAMAKQAEAERER 186
>Y1511_PYRHO (O59180) Hypothetical protein PH1511| Length = 266 Score = 45.8 bits (107), Expect = 9e-05 Identities = 43/160 (26%), Positives = 77/160 (48%), Gaps = 4/160 (2%) Frame = +1 Query: 124 AIREQFGKFDSVLQPGCHCLPWIFGKRVVGHLTLRLQQLDVRC-ETKTKDNVFVTVVASI 300 A+ + G+ PG + IF K V+ + LR Q LDV ET TKDNV V V A + Sbjct: 34 AVIFRLGRVVGARGPGLFFIIPIFEKAVI--VDLRTQVLDVPVQETITKDNVPVRVNAVV 91 Query: 301 QYRPLAGKESDAYYKLTNTRSQIQA---YVFDVIRASVPKLNLDDAFVQKNDIAKAVEDE 471 +R + D +T ++ I A +R+ + + +LD+ +++ + ++ Sbjct: 92 YFRVV-----DPVKAVTQVKNYIMATSQISQTTLRSVIGQAHLDELLSERDKLNMQLQRI 146 Query: 472 LEKAMSAYGFEIVQTLIVDIEPDAHVKQAMNEINAAARMR 591 +++A +G ++ I D+E A +++AM A R R Sbjct: 147 IDEATDPWGIKVTAVEIKDVELPAGMQKAMARQAEAERER 186
>Y692_METTH (O26788) Hypothetical protein MTH692| Length = 318 Score = 44.3 bits (103), Expect = 3e-04 Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 2/155 (1%) Frame = +1 Query: 133 EQFGKFDSVLQPGCHCL-PWIFGKRVVGHLTLRLQQLDVRC-ETKTKDNVFVTVVASIQY 306 E+ GK+ ++ G + P+I + + +R Q +DV E TKDN V V I Y Sbjct: 31 ERLGKYQRTVESGLVVIIPFI---EAIKKVDMREQVVDVPPQEVITKDNTVVVVDCVIFY 87 Query: 307 RPLAGKESDAYYKLTNTRSQIQAYVFDVIRASVPKLNLDDAFVQKNDIAKAVEDELEKAM 486 + +A Y + + I +R + L LD + I + + L++A Sbjct: 88 EVV--DPFNAVYNVVDFYQAITKLAQTNLRNIIGDLELDQTLTSREMINTQLREVLDEAT 145 Query: 487 SAYGFEIVQTLIVDIEPDAHVKQAMNEINAAARMR 591 +G +V+ I IEP + +AM++ A RM+ Sbjct: 146 DKWGTRVVRVEIQRIEPPGDIVEAMSKQMKAERMK 180
>STML2_HUMAN (Q9UJZ1) Stomatin-like protein 2 (SLP-2) (EPB72-like 2)| Length = 356 Score = 41.6 bits (96), Expect = 0.002 Identities = 38/164 (23%), Positives = 73/164 (44%), Gaps = 2/164 (1%) Frame = +1 Query: 106 VDQSTVAIREQFGKFDSVLQPGCHCL-PWIFGKRVVGHLTLRLQQLDVRCETKTKDNVFV 282 V Q + E+ G+F +L+PG + L P + R V L + + + T DNV + Sbjct: 41 VPQQEAWVVERMGRFHRILEPGLNILIPVLDRIRYVQSLKEIVINVPEQ-SAVTLDNVTL 99 Query: 283 TVVASIQYRPLAGKESDAYYKLTNTRSQIQAYVFDVIRASVPKLNLDDAFVQKNDIAKAV 462 + + R + A Y + + + +R+ + KL+LD F ++ + ++ Sbjct: 100 QIDGVLYLRIM--DPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLNASI 157 Query: 463 EDELEKAMSAYGFEIVQTLIVDIEPDAHVKQAMN-EINAAARMR 591 D + +A +G ++ I DI VK++M ++ A R R Sbjct: 158 VDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKR 201
>HFLK_VIBPA (P40605) Protein hflK| Length = 400 Score = 40.8 bits (94), Expect = 0.003 Identities = 36/154 (23%), Positives = 65/154 (42%), Gaps = 6/154 (3%) Frame = +1 Query: 136 QFGKFDSVLQPGCHCLPWIFGKRVVGHLTLRLQQLDVRCETKTKDNVFVTVVASIQYRPL 315 + GK+D ++ PG + P + ++ ++ L TKD VTV +QYR Sbjct: 103 RLGKYDRIVDPGLNWRPRFIDEYEAVNVQA-IRSLRASGLMLTKDENVVTVAMDVQYR-- 159 Query: 316 AGKESDAY---YKLTNTRSQIQAYVFDVIRASVPKLNLDDAFVQ-KNDIAKAVEDELEKA 483 +D Y Y++TN ++ +RA + +D + I ++ ++ L + Sbjct: 160 ---VADPYKYLYRVTNADDSLRQATDSALRAVIGDSLMDSILTSGRQQIRQSTQETLNQI 216 Query: 484 MSAY--GFEIVQTLIVDIEPDAHVKQAMNEINAA 579 + +Y G IV P VK A ++ AA Sbjct: 217 IDSYDMGLVIVDVNFQSARPPEQVKDAFDDAIAA 250
>STML2_MOUSE (Q99JB2) Stomatin-like protein 2 (SLP-2)| Length = 353 Score = 40.4 bits (93), Expect = 0.004 Identities = 38/164 (23%), Positives = 72/164 (43%), Gaps = 2/164 (1%) Frame = +1 Query: 106 VDQSTVAIREQFGKFDSVLQPGCHCL-PWIFGKRVVGHLTLRLQQLDVRCETKTKDNVFV 282 V Q + E+ G+F +L+PG + L P + R V L + + + T DNV + Sbjct: 41 VPQQEAWVVERMGRFHRILEPGLNVLIPVLDRIRYVQSLKEIVINVPEQ-SAVTLDNVTL 99 Query: 283 TVVASIQYRPLAGKESDAYYKLTNTRSQIQAYVFDVIRASVPKLNLDDAFVQKNDIAKAV 462 + + R + A Y + + + +R+ + KL+LD F ++ + + Sbjct: 100 QIDGVLYLRIM--DPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLNANI 157 Query: 463 EDELEKAMSAYGFEIVQTLIVDIEPDAHVKQAMN-EINAAARMR 591 D + +A +G ++ I DI VK++M ++ A R R Sbjct: 158 VDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKR 201
>Y827_METJA (Q58237) Hypothetical protein MJ0827| Length = 199 Score = 40.4 bits (93), Expect = 0.004 Identities = 37/164 (22%), Positives = 74/164 (45%) Frame = +1 Query: 100 VQVDQSTVAIREQFGKFDSVLQPGCHCLPWIFGKRVVGHLTLRLQQLDVRCETKTKDNVF 279 V V+Q + + G+ L+PG + + V + R+ + + E TKDN Sbjct: 26 VIVNQYEGGLIFRLGRVIGKLKPGINIIIPFLDVPVKVDMRTRVTDIPPQ-EMITKDNAV 84 Query: 280 VTVVASIQYRPLAGKESDAYYKLTNTRSQIQAYVFDVIRASVPKLNLDDAFVQKNDIAKA 459 V V A + YR + ++ A ++ + I +RA + + LD+ ++ I Sbjct: 85 VKVDAVVYYRVIDVEK--AILEVEDYEYAIINLAQTTLRAIIGSMELDEVLNKREYINSK 142 Query: 460 VEDELEKAMSAYGFEIVQTLIVDIEPDAHVKQAMNEINAAARMR 591 + + L++ A+G I + + +I+P +K AM + A R++ Sbjct: 143 LLEILDRETDAWGVRIEKVEVKEIDPPEDIKNAMAQQMKAERLK 186
>HFLK_VIBCH (Q9KV09) Protein hflK| Length = 395 Score = 40.0 bits (92), Expect = 0.005 Identities = 39/154 (25%), Positives = 63/154 (40%), Gaps = 6/154 (3%) Frame = +1 Query: 136 QFGKFDSVLQPGCHCLPWIFGKRVVGHLTLRLQQLDVRCETKTKDNVFVTVVASIQYRPL 315 + GK+D ++ PG + P F V ++ L TKD VTV +QYR Sbjct: 100 RLGKYDRIVDPGLNWRPR-FIDEVTPVNVQAIRSLRASGLMLTKDENVVTVSMDVQYR-- 156 Query: 316 AGKESDAY---YKLTNTRSQIQAYVFDVIRASVPKLNLDDAFVQ-KNDIAKAVEDELEKA 483 +D Y Y++TN ++ +RA V +D + I ++ + L + Sbjct: 157 ---IADPYKYLYRVTNADDSLRQATDSALRAVVGDSLMDSILTSGRQQIRQSTQQTLNQV 213 Query: 484 MSAY--GFEIVQTLIVDIEPDAHVKQAMNEINAA 579 + +Y G IV P VK A ++ AA Sbjct: 214 IDSYDMGLMIVDVNFQSARPPEQVKDAFDDAIAA 247
>HFLK_BUCBP (Q89A39) Protein hflK| Length = 417 Score = 36.2 bits (82), Expect = 0.073 Identities = 32/141 (22%), Positives = 65/141 (46%), Gaps = 6/141 (4%) Frame = +1 Query: 106 VDQSTVAIREQFGKFDSVLQPGCHCLPWIFGKRVVGHLTLRLQQLDVRCETKTKDNVFVT 285 + +S + FGKF + PG H P I ++V+ +++++ T FV Sbjct: 91 IQESEYGVVTCFGKFSYLANPGLHWKP-ILIQKVIPIDVSTVREINTSGTILTYSEHFVQ 149 Query: 286 VVASIQYRPLAGKESDAYYKLTNTRSQIQAYVFDVIRASVPKLNLD------DAFVQKND 447 V ++QYR + K+ + +TN + ++ + +R+ + + N+D + + KND Sbjct: 150 VNMTVQYRIVDPKK--YLFSVTNPDNCLRQSINSALRSVISRSNIDIFLKNEFSLLAKND 207 Query: 448 IAKAVEDELEKAMSAYGFEIV 510 I + ++K + Y IV Sbjct: 208 I----KVNIQKIIKPYHMGIV 224
>HFLK_HAEIN (P44546) Protein hflK| Length = 410 Score = 35.8 bits (81), Expect = 0.096 Identities = 29/147 (19%), Positives = 63/147 (42%), Gaps = 3/147 (2%) Frame = +1 Query: 136 QFGKFDSVLQPGCHCLPWIFGKRVVGHLTLRLQQLDVRCETKTKDNVFVTVVASIQYRPL 315 +FG+ S++QPG + P F +V+ ++++L + T+D V V ++QYR Sbjct: 117 RFGELHSIVQPGLNWKP-TFVDKVLPVNVEQVKELRTQGAMLTQDENMVKVEMTVQYR-- 173 Query: 316 AGKESDAYYKLTNTRSQIQAYVFDVIRASVPKLNLDDAFVQKNDIAKA-VEDELEKAMSA 492 + + +TN + +R + ++++D + + L + + + Sbjct: 174 VQDPAKYLFSVTNADDSLNQATDSALRYVIGHMSMNDILTTGRSVVRENTWKALNEIIKS 233 Query: 493 Y--GFEIVQTLIVDIEPDAHVKQAMNE 567 Y G E++ P VK A ++ Sbjct: 234 YDMGLEVIDVNFQSARPPEEVKDAFDD 260
>HFLK_ECOLI (P0ABC7) Protein hflK| Length = 419 Score = 34.3 bits (77), Expect = 0.28 Identities = 33/151 (21%), Positives = 61/151 (40%), Gaps = 3/151 (1%) Frame = +1 Query: 136 QFGKFDSVLQPGCHCLPWIFGKRVVGHLTLRLQQLDVRCETKTKDNVFVTVVASIQYRPL 315 +FGKF +++PG + P F V +++L T D V V ++QYR Sbjct: 110 RFGKFSHLVEPGLNWKP-TFIDEVKPVNVEAVRELAASGVMLTSDENVVRVEMNVQYR-- 166 Query: 316 AGKESDAYYKLTNTRSQIQAYVFDVIRASVPKLNLDDAFVQKNDIAKA-VEDELEKAMSA 492 Y +T+ ++ +R + K +D + + ++ + ELE+ + Sbjct: 167 VTNPEKYLYSVTSPDDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQRELEETIRP 226 Query: 493 Y--GFEIVQTLIVDIEPDAHVKQAMNEINAA 579 Y G ++ P VK A ++ AA Sbjct: 227 YDMGITLLDVNFQAARPPEEVKAAFDDAIAA 257
>HFLK_ECO57 (P0ABC8) Protein hflK| Length = 419 Score = 34.3 bits (77), Expect = 0.28 Identities = 33/151 (21%), Positives = 61/151 (40%), Gaps = 3/151 (1%) Frame = +1 Query: 136 QFGKFDSVLQPGCHCLPWIFGKRVVGHLTLRLQQLDVRCETKTKDNVFVTVVASIQYRPL 315 +FGKF +++PG + P F V +++L T D V V ++QYR Sbjct: 110 RFGKFSHLVEPGLNWKP-TFIDEVKPVNVEAVRELAASGVMLTSDENVVRVEMNVQYR-- 166 Query: 316 AGKESDAYYKLTNTRSQIQAYVFDVIRASVPKLNLDDAFVQKNDIAKA-VEDELEKAMSA 492 Y +T+ ++ +R + K +D + + ++ + ELE+ + Sbjct: 167 VTNPEKYLYSVTSPDDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQRELEETIRP 226 Query: 493 Y--GFEIVQTLIVDIEPDAHVKQAMNEINAA 579 Y G ++ P VK A ++ AA Sbjct: 227 YDMGITLLDVNFQAARPPEEVKAAFDDAIAA 257
>HFLK_BUCAI (P57631) Protein hflK| Length = 406 Score = 33.1 bits (74), Expect = 0.62 Identities = 34/155 (21%), Positives = 62/155 (40%), Gaps = 4/155 (2%) Frame = +1 Query: 139 FGKFDSVLQPGCHCLPWIFGK-RVVGHLTLRLQQLDVRCETKTKDNVFVTVVASIQYRPL 315 FGKF ++QPG + P F + + V T+R +L T D V V ++QY+ Sbjct: 98 FGKFSHLVQPGLNWRPVFFNEVKPVNVETVR--ELATSGIMLTADENVVRVEMNVQYK-- 153 Query: 316 AGKESDAYYKLTNTRSQIQAYVFDVIRASVPKLNLDDAFVQKNDIAKA-VEDELEKAMSA 492 +D + + ++ +R + +D + + ++ + E+E + Sbjct: 154 ITNPADYLFSVCYPDDSLRQATDSALRGVIGHSTMDRVLTEGRTLVRSDTQKEIENTIKP 213 Query: 493 Y--GFEIVQTLIVDIEPDAHVKQAMNEINAAARMR 591 Y G I+ P VK A ++ AA R Sbjct: 214 YKMGITILDVNFQTARPPEEVKAAFDDAIAARENR 248
>Y988_THET2 (Q72IZ3) Hypothetical RNA methyltransferase TT_C0988 (EC 2.1.1.-)| Length = 406 Score = 32.7 bits (73), Expect = 0.81 Identities = 18/34 (52%), Positives = 24/34 (70%), Gaps = 2/34 (5%) Frame = -2 Query: 463 PQPLLYRSSAR-KRHP-G*ASEHLP*SHQKHRLE 368 P+PL YR++A+ RHP G + LP SH+ HRLE Sbjct: 107 PRPLAYRTAAQYARHPLGGLAYRLPESHELHRLE 140
>L2CC_DROME (P24156) Protein l(2)37Cc| Length = 276 Score = 32.7 bits (73), Expect = 0.81 Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 3/120 (2%) Frame = +1 Query: 151 DSVLQPGCHC-LPWIFGKRVVGHLTLRLQQLDVRCETKTKDNVFVTVVASIQYRPLAGKE 327 ++V+ G H +PW+ + +R Q +V T +KD V + I YRP+ + Sbjct: 47 ENVVGEGTHFFIPWVQRPII---FDIRSQPRNVPVITGSKDLQNVNITLRILYRPIPDQL 103 Query: 328 SDAYYKLTNTRSQ--IQAYVFDVIRASVPKLNLDDAFVQKNDIAKAVEDELEKAMSAYGF 501 Y L + + + +V++A V + + + Q+ +++ V EL +GF Sbjct: 104 PKIYTILGQDYDERVLPSIAPEVLKAVVAQFDAGELITQREMVSQRVSQELTVRAKQFGF 163
>Y1420_ARCFU (O28852) Hypothetical protein AF1420| Length = 249 Score = 32.0 bits (71), Expect = 1.4 Identities = 33/153 (21%), Positives = 66/153 (43%), Gaps = 1/153 (0%) Frame = +1 Query: 136 QFGKFDSVLQPGCHCLPWIFGKRVVGHLTLRLQQLDVRC-ETKTKDNVFVTVVASIQYRP 312 + G+ PG + I VV + LR DV E TKDNV V V A + YR Sbjct: 33 RLGRLVGARGPGLFFIIPILENMVV--VDLRTVTYDVPSQEVVTKDNVTVKVNAVVYYRV 90 Query: 313 LAGKESDAYYKLTNTRSQIQAYVFDVIRASVPKLNLDDAFVQKNDIAKAVEDELEKAMSA 492 + + A ++ + + +R+ + + LD+ +++ + ++ +++ + Sbjct: 91 V--DPAKAVTEVFDYQYATAQLAQTTLRSIIGQAELDEVLSERDKLNVKLQQIIDEETNP 148 Query: 493 YGFEIVQTLIVDIEPDAHVKQAMNEINAAARMR 591 +G ++ I D+E +++ M A R R Sbjct: 149 WGIKVTAVEIKDVELPEEMRRIMAMQAEAERER 181
>YAFJ_ECOLI (Q47147) Hypothetical protein yafJ| Length = 255 Score = 31.2 bits (69), Expect = 2.4 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 7/90 (7%) Frame = +1 Query: 82 GNLCCCVQVDQSTVAIREQFGKFDSVLQPG----CHC---LPWIFGKRVVGHLTLRLQQL 240 GN+ + S Q G F+ +L G +C L WI + G TL Q + Sbjct: 150 GNMAAVFKYIASLADELRQKGVFNMLLSDGRYVMAYCSTNLHWITRRAPFGVATLLDQDV 209 Query: 241 DVRCETKTKDNVFVTVVASIQYRPLAGKES 330 ++ ++T N VTV+A+ +PL G E+ Sbjct: 210 EIDFSSQTTPNDVVTVIAT---QPLTGNET 236
>LDLR2_XENLA (Q99088) Low-density lipoprotein receptor 2 precursor (LDL receptor| 2) Length = 892 Score = 29.6 bits (65), Expect = 6.9 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Frame = -3 Query: 549 DMRIWLDVDNEGLHDLKAIC*HSLFKFILHSLC-YIVLLHESVIQVELRNTCPDH 388 D+ W D++NE + K + ++ K H L ++L+ ++ Q + N C H Sbjct: 614 DLVFWTDIENEAIFSAKRLTGENIMKVAEHLLSPEDIVLYHNLRQPKAENWCESH 668
>SYYM_YEAST (P48527) Tyrosyl-tRNA synthetase, mitochondrial precursor (EC| 6.1.1.1) (Tyrosine--tRNA ligase) (TyrRS) Length = 492 Score = 29.3 bits (64), Expect = 9.0 Identities = 14/60 (23%), Positives = 28/60 (46%) Frame = +1 Query: 352 NTRSQIQAYVFDVIRASVPKLNLDDAFVQKNDIAKAVEDELEKAMSAYGFEIVQTLIVDI 531 NT + + ++ + A VPK F+ ++I K VE ++ YG ++ + D+ Sbjct: 319 NTAYDVYQFFYNTLDADVPKFLKIFTFLNSSEIKKIVETHIKSPSLRYGQTLLAKEVTDM 378
>VGLB_GPCMV (Q69024) Glycoprotein B precursor| Length = 901 Score = 29.3 bits (64), Expect = 9.0 Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 19/170 (11%) Frame = +1 Query: 85 NLCCCVQVDQSTVAIREQFGKF-DSVLQPGCHCLPWIFGKRVVGHLTLRLQQLDV----- 246 +L C++V+QSTV I+ KF D GC+ P ++ + +RL QL Sbjct: 529 SLAKCIEVNQSTVLIKGDMRKFSDDGKLEGCYSRPVVWFS-MKNSTEVRLGQLGEDNEIL 587 Query: 247 ----RCETKTKDNVFVTVVASIQYRPLAGKESDAYYKLTNTRSQIQAYVFDVIRASVPKL 414 R ET + + V I Y + + K N S+I + + P Sbjct: 588 LGTHRMETCQTQDYRIFVAGDIGYE----FQQYVFTKKINL-SEIDIIDTMIALKTEPLE 642 Query: 415 NLDDAFVQ---KNDIAKAVEDELEKAMSAYGFE------IVQTLIVDIEP 537 N+D ++ ++++A+A +LE M Y ++ +V+ +I I P Sbjct: 643 NIDFKVLELYSRDELAQANVFDLESIMREYNYQKKRLDFVVERVINPIPP 692
>REP_BUCBP (Q89A21) ATP-dependent DNA helicase rep (EC 3.6.1.-)| Length = 670 Score = 29.3 bits (64), Expect = 9.0 Identities = 16/65 (24%), Positives = 32/65 (49%) Frame = +1 Query: 340 YKLTNTRSQIQAYVFDVIRASVPKLNLDDAFVQKNDIAKAVEDELEKAMSAYGFEIVQTL 519 YK+ N++ + Y+ D+I + + +L++ V ND +L ++ G E + Sbjct: 515 YKIMNSKKFVMKYLIDIISEFILQNSLNEDIVINNDYV-----QLMTLHASKGLEFLYVF 569 Query: 520 IVDIE 534 IV +E Sbjct: 570 IVGVE 574
>Y6531_BACAN (Q9RN00) Hypothetical protein pXO2-32/BXB0031/GBAA_pXO2_0031| precursor Length = 162 Score = 29.3 bits (64), Expect = 9.0 Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%) Frame = +1 Query: 262 TKDNVFVTVVASIQYRPLAGKESDAYYKLTNTRSQIQAYVFDVIRASV-PKLNLDDAFVQ 438 +KDN F+T+ A ++R + S+A YK+ +T + ++ V+ SV K+N D + Sbjct: 41 SKDN-FITITAENEWRVKGSQNSEANYKVESTEYKGDSH--SVVAISVKEKINGSDPLLV 97 Query: 439 KND 447 ND Sbjct: 98 VND 100 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,595,555 Number of Sequences: 219361 Number of extensions: 1723465 Number of successful extensions: 4902 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 4715 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4898 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5196311029 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
