ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal30j07 |
|---|---|
| Clone Library Name | barley_pub |
>MAD14_ORYSA (Q7Y023) MADS-box transcription factor 14 (OsMADS14) (Protein| APETALA1-like B) (Protein AGAMOUS-like 10) (FDRMADS6) (RMADS211) Length = 246 Score = 34.7 bits (78), Expect = 0.059 Identities = 16/29 (55%), Positives = 18/29 (62%) Frame = +3 Query: 3 GTRAEDVAVQPQVPLRTALPLWMVSHING 89 G R EDVA +R LP WM+SHING Sbjct: 218 GERIEDVAAGQPQHVRIGLPPWMLSHING 246
>FCTA_STRAW (Q82M40) Probable formyl-coenzyme A transferase (EC 2.8.3.16)| (Formyl-CoA transferase) Length = 409 Score = 33.1 bits (74), Expect = 0.17 Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 6/51 (11%) Frame = -2 Query: 156 PGWPVQLVTR-TE*YAYM-----GWKPFSR*CGSPSTVEAPSGVGPEAALP 22 PGW V+ Y Y+ GWKP S G P + P PEA LP Sbjct: 245 PGWAVKCAPGGPNDYVYVIVQPVGWKPLSELIGRPELADDPEWATPEARLP 295
>FCTA_STRCO (O87838) Probable formyl-coenzyme A transferase (EC 2.8.3.16)| (Formyl-CoA transferase) Length = 410 Score = 30.8 bits (68), Expect = 0.85 Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 6/51 (11%) Frame = -2 Query: 156 PGWPVQLVTR-TE*YAYM-----GWKPFSR*CGSPSTVEAPSGVGPEAALP 22 PGW V+ Y Y+ GW+P S G P E P P A LP Sbjct: 246 PGWAVKCAPGGPNDYVYVIVQPVGWQPLSELIGRPELAEDPEWATPRARLP 296
>DUFFY_BOVIN (Q9GLX0) Duffy antigen/chemokine receptor (CD234 antigen)| Length = 330 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = -1 Query: 340 NSSLMLHINYMVDYSYSHLSPGGKETEVDEVKYTHSCSLLLYS 212 ++ L + ++++D+ + P ET+V+ HSCSLL YS Sbjct: 13 STKLAIKEDFLIDFPEDYY-PDYNETDVEAAAPCHSCSLLNYS 54
>GPC5D_HUMAN (Q9NZD1) G-protein coupled receptor family C group 5 member D| Length = 345 Score = 28.5 bits (62), Expect = 4.2 Identities = 17/51 (33%), Positives = 27/51 (52%) Frame = -3 Query: 155 QAGRCNLLLVLNSTLTWAGSPSAVDVAHHPQWKRRPEWDLRLHCHILCPRA 3 Q GR + VL S + W S + + +PQ++R+P+WD + C L A Sbjct: 201 QHGRLIFITVLFSIIIWVVWISML-LRGNPQFQRQPQWDDPVVCIALVTNA 250
>Y3087_MYCTU (O53304) Hypothetical UPF0089 protein Rv3087/MT3172| Length = 472 Score = 28.5 bits (62), Expect = 4.2 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%) Frame = -3 Query: 74 HHPQWKRRPEWDLRLHC-HILCP 9 HHP W PE+DL H ++CP Sbjct: 69 HHPIWVEDPEFDLDAHVRRVVCP 91
>ADH6_PERMA (P41681) Alcohol dehydrogenase 6 (EC 1.1.1.1) (Alcohol| dehydrogenase 2) (ADH-2) Length = 375 Score = 28.1 bits (61), Expect = 5.5 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +2 Query: 149 QPGVSCGCEHANPMEGRGKEIRVK*QAAGMC 241 +PG E + +GKE+RVK AAG+C Sbjct: 17 KPGAPLTMEEIDVAPPKGKEVRVKMVAAGIC 47
>LAR_DROME (P16621) Tyrosine-protein phosphatase Lar precursor (EC 3.1.3.48)| (Protein-tyrosine-phosphate phosphohydrolase) (dLAR) Length = 2029 Score = 28.1 bits (61), Expect = 5.5 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = -3 Query: 137 LLLVLNSTLTWAGSPSAVDVAHHPQWKRRPE 45 L L++ S LTW P+ VD AH P+ R+P+ Sbjct: 14 LSLLVLSLLTWT-HPTIVDAAHPPEIIRKPQ 43
>DPP8_HUMAN (Q6V1X1) Dipeptidyl peptidase 8 (EC 3.4.14.5) (Dipeptidyl peptidase| VIII) (DP8) (Prolyl dipeptidase DPP8) (Dipeptidyl peptidase IV-related protein 1) (DPRP-1) Length = 898 Score = 28.1 bits (61), Expect = 5.5 Identities = 13/35 (37%), Positives = 22/35 (62%) Frame = -1 Query: 301 YSYSHLSPGGKETEVDEVKYTHSCSLLLYSDFFSS 197 Y S+++PG + T + + Y+HSC + + DFF S Sbjct: 553 YVVSYVNPG-EVTRLTDRGYSHSCCISQHCDFFIS 586
>MAD15_ORYSA (Q6Q9I2) MADS-box transcription factor 15 (OsMADS15) (Protein| APETALA1-like A) (FDRMADS3) (RMADS215) Length = 267 Score = 28.1 bits (61), Expect = 5.5 Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 1/26 (3%) Frame = +3 Query: 12 AEDVAVQPQVPLRTA-LPLWMVSHIN 86 A VA Q QV LR LP WM+SH+N Sbjct: 241 AAAVAAQGQVQLRIGGLPPWMLSHLN 266
>RRPL_BUNYW (P20470) RNA-directed RNA polymerase (EC 2.7.7.48) (L protein)| Length = 2238 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = -1 Query: 340 NSSLMLHINYMVDYSYSHLSPGGKETEVDEVK-YTHSCSLLLYSD 209 N L+L + ++Y+Y + + + + Y HSC++L+Y D Sbjct: 1098 NDDLILEMTNGLNYNYVQIKRNWLQGNFNYISSYVHSCAMLVYKD 1142
>INVS_HUMAN (Q9Y283) Inversin (Inversion of embryo turning homolog)| (Nephrocystin-2) Length = 1065 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/37 (32%), Positives = 19/37 (51%) Frame = -1 Query: 274 GKETEVDEVKYTHSCSLLLYSDFFSSPLHGVSMFATA 164 G T VD + SC++ Y + F +PLH ++ A Sbjct: 232 GNVTVVDVLTSYESCNITSYDNLFRTPLHWAALLGHA 268
>INVS_CANFA (Q6JAN1) Inversin (Inversion of embryo turning protein)| (Nephrocystin-2) Length = 1081 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/37 (32%), Positives = 19/37 (51%) Frame = -1 Query: 274 GKETEVDEVKYTHSCSLLLYSDFFSSPLHGVSMFATA 164 G T VD + SC++ Y + F +PLH ++ A Sbjct: 232 GNVTVVDVLTSYESCNITSYDNLFRTPLHWAALLGHA 268
>YL56_CAEEL (P34436) Hypothetical protein F44E2.6 in chromosome III| Length = 152 Score = 27.7 bits (60), Expect = 7.2 Identities = 15/44 (34%), Positives = 23/44 (52%) Frame = +1 Query: 64 CGW*ATSTAEGLPAHVSVLFSTSNKLHRPAWCIMRLRTC*PHGG 195 CGW A S + G A++ + S+ +HR +R +TC H G Sbjct: 84 CGWPAFSESVGQDANIVRIVDRSHGMHRTE---VRCKTCDAHLG 124
>RTP2_HUMAN (Q5QGT7) Receptor-transporting protein 2| Length = 225 Score = 27.7 bits (60), Expect = 7.2 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = +1 Query: 22 WQCSLRSHSGRRFHCGW*ATSTAEGLPAHVSVLF 123 W+ L H+ RFHC W T + AHV +LF Sbjct: 44 WKQYLEQHASGRFHCSW-CWHTWQS--AHVVILF 74
>MYC_DROME (Q9W4S7) Myc protein (dMyc1) (dMyc) (Diminutive protein)| Length = 717 Score = 27.3 bits (59), Expect = 9.4 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 11/45 (24%) Frame = -1 Query: 340 NSSLMLHINYMVDYSYSHL-----------SPGGKETEVDEVKYT 239 NS+ MLH+ ++ D+SY+ +P + E+D V YT Sbjct: 375 NSNGMLHMMHITDHSYTRCNDMVDDGPNLETPSDSDEEIDVVSYT 419
>INVS_MOUSE (O89019) Inversin (Inversion of embryo turning protein)| (Nephrocystin-2) Length = 1062 Score = 27.3 bits (59), Expect = 9.4 Identities = 12/37 (32%), Positives = 19/37 (51%) Frame = -1 Query: 274 GKETEVDEVKYTHSCSLLLYSDFFSSPLHGVSMFATA 164 G T VD + SC++ Y + F +PLH ++ A Sbjct: 232 GNLTVVDVLTSYESCNITSYDNLFRTPLHWAALLGHA 268
>RBL_METAC (Q8THG2) Ribulose bisphosphate carboxylase (EC 4.1.1.39) (RuBisCO)| Length = 428 Score = 27.3 bits (59), Expect = 9.4 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Frame = -1 Query: 271 KETEVDE--VKYTHSCSLLLYSDFFSSPLHGVSMFATA*YTRLAG 143 +E DE + H C ++S F +P HGVSM A RL G Sbjct: 257 REAAADEGLALHAHRC---MHSAFTRNPRHGVSMLLVAKLCRLIG 298
>PK3CD_HUMAN (O00329) Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic| subunit delta isoform (EC 2.7.1.153) (PI3-kinase p110 subunit delta) (PtdIns-3-kinase p110) (PI3K) (p110delta) Length = 1044 Score = 27.3 bits (59), Expect = 9.4 Identities = 17/48 (35%), Positives = 24/48 (50%) Frame = -3 Query: 173 RNRMIHQAGRCNLLLVLNSTLTWAGSPSAVDVAHHPQWKRRPEWDLRL 30 R +++ QAG L N L S S V V P WK+R E+D+ + Sbjct: 338 RMKLVVQAG----LFHGNEMLCKTVSSSEVSVCSEPVWKQRLEFDINI 381 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,395,126 Number of Sequences: 219361 Number of extensions: 1207789 Number of successful extensions: 3083 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3015 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3082 length of database: 80,573,946 effective HSP length: 96 effective length of database: 59,515,290 effective search space used: 1428366960 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
