ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baal30j03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_197930.1| Oryza sativa (japonica cultivar-group) putative Clp protease (OSJNBa0056G17.6), mRNA Length = 897 Score = 551 bits (278), Expect = e-154 Identities = 422/470 (89%) Strand = Plus / Plus Query: 144 ggtgacgtcatgggccttcttctccgggagcgcatcatcttcctcggcaacgagatcgag 203 ||||||||||||||||| || ||||||||||||||| ||||||||||||||||||| ||| Sbjct: 235 ggtgacgtcatgggcctcctcctccgggagcgcatcgtcttcctcggcaacgagatagag 294 Query: 204 gacttcctcgccgacgccgtcgtcagccagctcctcctcctcgacgccatggactccgaa 263 ||||||||||||||||| |||||||||||||||||||||||||||||| | ||| || | Sbjct: 295 gacttcctcgccgacgcagtcgtcagccagctcctcctcctcgacgccgtcgaccccaac 354 Query: 264 tctgacatccggctcttcgtcaactcccccggtggatcactcagtgcgacaatggctatc 323 ||||||||||| ||||||||||||||||| || ||||||||||| || |||||||| ||| Sbjct: 355 tctgacatccgcctcttcgtcaactcccctgggggatcactcagcgcaacaatggccatc 414 Query: 324 tacgatgtaatgcagctggtgagggcagatgtatccactattggaatgggcatagctgga 383 || |||||||||||||| |||||||||||||| |||||||||||| ||||||||||||| Sbjct: 415 tatgatgtaatgcagctcgtgagggcagatgtttccactattggattgggcatagctggt 474 Query: 384 tccacagcttctatactccttggtggtggcgcaaagggcaaacggttcgccatgcccaac 443 ||||| ||||||||| |||||||||||||| |||||||||| || ||||||||||||||| Sbjct: 475 tccactgcttctataatccttggtggtggcacaaagggcaagcgattcgccatgcccaac 534 Query: 444 accaggattatgatgcatcagcccgtgggaggcgcgagtggccaggccttggatgtagag 503 |||||||| ||||| ||||||||||| |||||||| ||||| |||||||||||||| ||| Sbjct: 535 accaggataatgatccatcagcccgttggaggcgcaagtgggcaggccttggatgtcgag 594 Query: 504 gtccaagccaaggaaattctggctagcaagaggaatgtcatccggctgatatcaggcttt 563 ||||| |||||||| || || ||| ||||||||||||||||||||| |||||||| || Sbjct: 595 gtccaggccaaggagatattgactaacaagaggaatgtcatccggcttatatcaggtttc 654 Query: 564 acgggacgcacactggagcaggtagagaaagacatcgatagggaccgata 613 || |||||||| | ||||||||| ||||||||||| ||||| ||| |||| Sbjct: 655 acaggacgcactccggagcaggttgagaaagacattgatagagacagata 704
>dbj|AK104823.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-F03, full insert sequence Length = 1125 Score = 551 bits (278), Expect = e-154 Identities = 422/470 (89%) Strand = Plus / Plus Query: 144 ggtgacgtcatgggccttcttctccgggagcgcatcatcttcctcggcaacgagatcgag 203 ||||||||||||||||| || ||||||||||||||| ||||||||||||||||||| ||| Sbjct: 248 ggtgacgtcatgggcctcctcctccgggagcgcatcgtcttcctcggcaacgagatagag 307 Query: 204 gacttcctcgccgacgccgtcgtcagccagctcctcctcctcgacgccatggactccgaa 263 ||||||||||||||||| |||||||||||||||||||||||||||||| | ||| || | Sbjct: 308 gacttcctcgccgacgcagtcgtcagccagctcctcctcctcgacgccgtcgaccccaac 367 Query: 264 tctgacatccggctcttcgtcaactcccccggtggatcactcagtgcgacaatggctatc 323 ||||||||||| ||||||||||||||||| || ||||||||||| || |||||||| ||| Sbjct: 368 tctgacatccgcctcttcgtcaactcccctgggggatcactcagcgcaacaatggccatc 427 Query: 324 tacgatgtaatgcagctggtgagggcagatgtatccactattggaatgggcatagctgga 383 || |||||||||||||| |||||||||||||| |||||||||||| ||||||||||||| Sbjct: 428 tatgatgtaatgcagctcgtgagggcagatgtttccactattggattgggcatagctggt 487 Query: 384 tccacagcttctatactccttggtggtggcgcaaagggcaaacggttcgccatgcccaac 443 ||||| ||||||||| |||||||||||||| |||||||||| || ||||||||||||||| Sbjct: 488 tccactgcttctataatccttggtggtggcacaaagggcaagcgattcgccatgcccaac 547 Query: 444 accaggattatgatgcatcagcccgtgggaggcgcgagtggccaggccttggatgtagag 503 |||||||| ||||| ||||||||||| |||||||| ||||| |||||||||||||| ||| Sbjct: 548 accaggataatgatccatcagcccgttggaggcgcaagtgggcaggccttggatgtcgag 607 Query: 504 gtccaagccaaggaaattctggctagcaagaggaatgtcatccggctgatatcaggcttt 563 ||||| |||||||| || || ||| ||||||||||||||||||||| |||||||| || Sbjct: 608 gtccaggccaaggagatattgactaacaagaggaatgtcatccggcttatatcaggtttc 667 Query: 564 acgggacgcacactggagcaggtagagaaagacatcgatagggaccgata 613 || |||||||| | ||||||||| ||||||||||| ||||| ||| |||| Sbjct: 668 acaggacgcactccggagcaggttgagaaagacattgatagagacagata 717
>dbj|AK104589.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-H06, full insert sequence Length = 1045 Score = 551 bits (278), Expect = e-154 Identities = 422/470 (89%) Strand = Plus / Plus Query: 144 ggtgacgtcatgggccttcttctccgggagcgcatcatcttcctcggcaacgagatcgag 203 ||||||||||||||||| || ||||||||||||||| ||||||||||||||||||| ||| Sbjct: 242 ggtgacgtcatgggcctcctcctccgggagcgcatcgtcttcctcggcaacgagatagag 301 Query: 204 gacttcctcgccgacgccgtcgtcagccagctcctcctcctcgacgccatggactccgaa 263 ||||||||||||||||| |||||||||||||||||||||||||||||| | ||| || | Sbjct: 302 gacttcctcgccgacgcagtcgtcagccagctcctcctcctcgacgccgtcgaccccaac 361 Query: 264 tctgacatccggctcttcgtcaactcccccggtggatcactcagtgcgacaatggctatc 323 ||||||||||| ||||||||||||||||| || ||||||||||| || |||||||| ||| Sbjct: 362 tctgacatccgcctcttcgtcaactcccctgggggatcactcagcgcaacaatggccatc 421 Query: 324 tacgatgtaatgcagctggtgagggcagatgtatccactattggaatgggcatagctgga 383 || |||||||||||||| |||||||||||||| |||||||||||| ||||||||||||| Sbjct: 422 tatgatgtaatgcagctcgtgagggcagatgtttccactattggattgggcatagctggt 481 Query: 384 tccacagcttctatactccttggtggtggcgcaaagggcaaacggttcgccatgcccaac 443 ||||| ||||||||| |||||||||||||| |||||||||| || ||||||||||||||| Sbjct: 482 tccactgcttctataatccttggtggtggcacaaagggcaagcgattcgccatgcccaac 541 Query: 444 accaggattatgatgcatcagcccgtgggaggcgcgagtggccaggccttggatgtagag 503 |||||||| ||||| ||||||||||| |||||||| ||||| |||||||||||||| ||| Sbjct: 542 accaggataatgatccatcagcccgttggaggcgcaagtgggcaggccttggatgtcgag 601 Query: 504 gtccaagccaaggaaattctggctagcaagaggaatgtcatccggctgatatcaggcttt 563 ||||| |||||||| || || ||| ||||||||||||||||||||| |||||||| || Sbjct: 602 gtccaggccaaggagatattgactaacaagaggaatgtcatccggcttatatcaggtttc 661 Query: 564 acgggacgcacactggagcaggtagagaaagacatcgatagggaccgata 613 || |||||||| | ||||||||| ||||||||||| ||||| ||| |||| Sbjct: 662 acaggacgcactccggagcaggttgagaaagacattgatagagacagata 711
>dbj|AK104666.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-312-A06, full insert sequence Length = 1069 Score = 551 bits (278), Expect = e-154 Identities = 422/470 (89%) Strand = Plus / Plus Query: 144 ggtgacgtcatgggccttcttctccgggagcgcatcatcttcctcggcaacgagatcgag 203 ||||||||||||||||| || ||||||||||||||| ||||||||||||||||||| ||| Sbjct: 246 ggtgacgtcatgggcctcctcctccgggagcgcatcgtcttcctcggcaacgagatagag 305 Query: 204 gacttcctcgccgacgccgtcgtcagccagctcctcctcctcgacgccatggactccgaa 263 ||||||||||||||||| |||||||||||||||||||||||||||||| | ||| || | Sbjct: 306 gacttcctcgccgacgcagtcgtcagccagctcctcctcctcgacgccgtcgaccccaac 365 Query: 264 tctgacatccggctcttcgtcaactcccccggtggatcactcagtgcgacaatggctatc 323 ||||||||||| ||||||||||||||||| || ||||||||||| || |||||||| ||| Sbjct: 366 tctgacatccgcctcttcgtcaactcccctgggggatcactcagcgcaacaatggccatc 425 Query: 324 tacgatgtaatgcagctggtgagggcagatgtatccactattggaatgggcatagctgga 383 || |||||||||||||| |||||||||||||| |||||||||||| ||||||||||||| Sbjct: 426 tatgatgtaatgcagctcgtgagggcagatgtttccactattggattgggcatagctggt 485 Query: 384 tccacagcttctatactccttggtggtggcgcaaagggcaaacggttcgccatgcccaac 443 ||||| ||||||||| |||||||||||||| |||||||||| || ||||||||||||||| Sbjct: 486 tccactgcttctataatccttggtggtggcacaaagggcaagcgattcgccatgcccaac 545 Query: 444 accaggattatgatgcatcagcccgtgggaggcgcgagtggccaggccttggatgtagag 503 |||||||| ||||| ||||||||||| |||||||| ||||| |||||||||||||| ||| Sbjct: 546 accaggataatgatccatcagcccgttggaggcgcaagtgggcaggccttggatgtcgag 605 Query: 504 gtccaagccaaggaaattctggctagcaagaggaatgtcatccggctgatatcaggcttt 563 ||||| |||||||| || || ||| ||||||||||||||||||||| |||||||| || Sbjct: 606 gtccaggccaaggagatattgactaacaagaggaatgtcatccggcttatatcaggtttc 665 Query: 564 acgggacgcacactggagcaggtagagaaagacatcgatagggaccgata 613 || |||||||| | ||||||||| ||||||||||| ||||| ||| |||| Sbjct: 666 acaggacgcactccggagcaggttgagaaagacattgatagagacagata 715
>dbj|AK104396.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-C09, full insert sequence Length = 1106 Score = 551 bits (278), Expect = e-154 Identities = 422/470 (89%) Strand = Plus / Plus Query: 144 ggtgacgtcatgggccttcttctccgggagcgcatcatcttcctcggcaacgagatcgag 203 ||||||||||||||||| || ||||||||||||||| ||||||||||||||||||| ||| Sbjct: 246 ggtgacgtcatgggcctcctcctccgggagcgcatcgtcttcctcggcaacgagatagag 305 Query: 204 gacttcctcgccgacgccgtcgtcagccagctcctcctcctcgacgccatggactccgaa 263 ||||||||||||||||| |||||||||||||||||||||||||||||| | ||| || | Sbjct: 306 gacttcctcgccgacgcagtcgtcagccagctcctcctcctcgacgccgtcgaccccaac 365 Query: 264 tctgacatccggctcttcgtcaactcccccggtggatcactcagtgcgacaatggctatc 323 ||||||||||| ||||||||||||||||| || ||||||||||| || |||||||| ||| Sbjct: 366 tctgacatccgcctcttcgtcaactcccctgggggatcactcagcgcaacaatggccatc 425 Query: 324 tacgatgtaatgcagctggtgagggcagatgtatccactattggaatgggcatagctgga 383 || |||||||||||||| |||||||||||||| |||||||||||| ||||||||||||| Sbjct: 426 tatgatgtaatgcagctcgtgagggcagatgtttccactattggattgggcatagctggt 485 Query: 384 tccacagcttctatactccttggtggtggcgcaaagggcaaacggttcgccatgcccaac 443 ||||| ||||||||| |||||||||||||| |||||||||| || ||||||||||||||| Sbjct: 486 tccactgcttctataatccttggtggtggcacaaagggcaagcgattcgccatgcccaac 545 Query: 444 accaggattatgatgcatcagcccgtgggaggcgcgagtggccaggccttggatgtagag 503 |||||||| ||||| ||||||||||| |||||||| ||||| |||||||||||||| ||| Sbjct: 546 accaggataatgatccatcagcccgttggaggcgcaagtgggcaggccttggatgtcgag 605 Query: 504 gtccaagccaaggaaattctggctagcaagaggaatgtcatccggctgatatcaggcttt 563 ||||| |||||||| || || ||| ||||||||||||||||||||| |||||||| || Sbjct: 606 gtccaggccaaggagatattgactaacaagaggaatgtcatccggcttatatcaggtttc 665 Query: 564 acgggacgcacactggagcaggtagagaaagacatcgatagggaccgata 613 || |||||||| | ||||||||| ||||||||||| ||||| ||| |||| Sbjct: 666 acaggacgcactccggagcaggttgagaaagacattgatagagacagata 715
>dbj|AK065306.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002O07, full insert sequence Length = 1113 Score = 551 bits (278), Expect = e-154 Identities = 422/470 (89%) Strand = Plus / Plus Query: 144 ggtgacgtcatgggccttcttctccgggagcgcatcatcttcctcggcaacgagatcgag 203 ||||||||||||||||| || ||||||||||||||| ||||||||||||||||||| ||| Sbjct: 249 ggtgacgtcatgggcctcctcctccgggagcgcatcgtcttcctcggcaacgagatagag 308 Query: 204 gacttcctcgccgacgccgtcgtcagccagctcctcctcctcgacgccatggactccgaa 263 ||||||||||||||||| |||||||||||||||||||||||||||||| | ||| || | Sbjct: 309 gacttcctcgccgacgcagtcgtcagccagctcctcctcctcgacgccgtcgaccccaac 368 Query: 264 tctgacatccggctcttcgtcaactcccccggtggatcactcagtgcgacaatggctatc 323 ||||||||||| ||||||||||||||||| || ||||||||||| || |||||||| ||| Sbjct: 369 tctgacatccgcctcttcgtcaactcccctgggggatcactcagcgcaacaatggccatc 428 Query: 324 tacgatgtaatgcagctggtgagggcagatgtatccactattggaatgggcatagctgga 383 || |||||||||||||| |||||||||||||| |||||||||||| ||||||||||||| Sbjct: 429 tatgatgtaatgcagctcgtgagggcagatgtttccactattggattgggcatagctggt 488 Query: 384 tccacagcttctatactccttggtggtggcgcaaagggcaaacggttcgccatgcccaac 443 ||||| ||||||||| |||||||||||||| |||||||||| || ||||||||||||||| Sbjct: 489 tccactgcttctataatccttggtggtggcacaaagggcaagcgattcgccatgcccaac 548 Query: 444 accaggattatgatgcatcagcccgtgggaggcgcgagtggccaggccttggatgtagag 503 |||||||| ||||| ||||||||||| |||||||| ||||| |||||||||||||| ||| Sbjct: 549 accaggataatgatccatcagcccgttggaggcgcaagtgggcaggccttggatgtcgag 608 Query: 504 gtccaagccaaggaaattctggctagcaagaggaatgtcatccggctgatatcaggcttt 563 ||||| |||||||| || || ||| ||||||||||||||||||||| |||||||| || Sbjct: 609 gtccaggccaaggagatattgactaacaagaggaatgtcatccggcttatatcaggtttc 668 Query: 564 acgggacgcacactggagcaggtagagaaagacatcgatagggaccgata 613 || |||||||| | ||||||||| ||||||||||| ||||| ||| |||| Sbjct: 669 acaggacgcactccggagcaggttgagaaagacattgatagagacagata 718
>gb|BT019171.1| Zea mays clone Contig840.F mRNA sequence Length = 1218 Score = 454 bits (229), Expect = e-124 Identities = 394/449 (87%) Strand = Plus / Minus Query: 150 gtcatgggccttcttctccgggagcgcatcatcttcctcggcaacgagatcgaggacttc 209 ||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 877 gtcatgggcctcctcctccgggagcgcatagtcttcctcggcaacgagatcgaggacttc 818 Query: 210 ctcgccgacgccgtcgtcagccagctcctcctcctcgacgccatggactccgaatctgac 269 ||||| ||||||||||||||||||||||||||||| |||||||| ||| | || |||||| Sbjct: 817 ctcgcggacgccgtcgtcagccagctcctcctccttgacgccatcgacccggactctgac 758 Query: 270 atccggctcttcgtcaactcccccggtggatcactcagtgcgacaatggctatctacgat 329 ||||| |||||||||||||| || || ||||| || || || |||||||| ||||| ||| Sbjct: 757 atccgcctcttcgtcaactcaccagggggatcccttagcgcaacaatggccatctatgat 698 Query: 330 gtaatgcagctggtgagggcagatgtatccactattggaatgggcatagctggatccaca 389 ||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| ||| Sbjct: 697 gtaatgcagcttgtgagggcagacgtgtccactattggaatgggcatagctggatcaaca 638 Query: 390 gcttctatactccttggtggtggcgcaaagggcaaacggttcgccatgcccaacaccagg 449 ||||||||| |||||||||||||| | |||||||| || || |||||||||||||||||| Sbjct: 637 gcttctataatccttggtggtggcacgaagggcaagcgatttgccatgcccaacaccagg 578 Query: 450 attatgatgcatcagcccgtgggaggcgcgagtggccaggccttggatgtagaggtccaa 509 |||||||| |||||||| || ||||| || ||||| |||||| | ||||||||||||||| Sbjct: 577 attatgatccatcagcctgtcggaggtgcaagtgggcaggccctagatgtagaggtccaa 518 Query: 510 gccaaggaaattctggctagcaagaggaatgtcatccggctgatatcaggctttacggga 569 || ||||| || || | | ||||||||||||||| ||| | |||||||||| || || Sbjct: 517 gcgaaggagatattgaccaacaagaggaatgtcattcggatcgtatcaggcttcacaggt 458 Query: 570 cgcacactggagcaggtagagaaagacat 598 ||||| | |||||||||||||||||||| Sbjct: 457 cgcactcctgagcaggtagagaaagacat 429
>gb|AY108536.1| Zea mays PCO126310 mRNA sequence Length = 1320 Score = 446 bits (225), Expect = e-122 Identities = 393/449 (87%) Strand = Plus / Plus Query: 150 gtcatgggccttcttctccgggagcgcatcatcttcctcggcaacgagatcgaggacttc 209 ||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 350 gtcatgggcctcctcctccgggagcgcatagtcttcctcggcaacgagatcgaggacttc 409 Query: 210 ctcgccgacgccgtcgtcagccagctcctcctcctcgacgccatggactccgaatctgac 269 ||||| ||||||||||||||||||||||||||||| |||||||| ||| | || |||||| Sbjct: 410 ctcgcggacgccgtcgtcagccagctcctcctccttgacgccatcgacccggactctgac 469 Query: 270 atccggctcttcgtcaactcccccggtggatcactcagtgcgacaatggctatctacgat 329 ||||| |||||||||||||| || || ||||| || || || |||||||| ||||| ||| Sbjct: 470 atccgcctcttcgtcaactcaccagggggatcccttagcgcaacaatggccatctatgat 529 Query: 330 gtaatgcagctggtgagggcagatgtatccactattggaatgggcatagctggatccaca 389 ||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| ||| Sbjct: 530 gtaatgcagcttgtgagggcagacgtgtccactattggaatgggcatagctggatcaaca 589 Query: 390 gcttctatactccttggtggtggcgcaaagggcaaacggttcgccatgcccaacaccagg 449 ||||||||| |||||||||||||| | |||||||| || || |||||||||||||||||| Sbjct: 590 gcttctataatccttggtggtggcacgaagggcaagcgatttgccatgcccaacaccagg 649 Query: 450 attatgatgcatcagcccgtgggaggcgcgagtggccaggccttggatgtagaggtccaa 509 |||||||| |||||||| || ||||| || || || |||||| | ||||||||||||||| Sbjct: 650 attatgatccatcagcctgtcggaggtgcaagcgggcaggccctagatgtagaggtccaa 709 Query: 510 gccaaggaaattctggctagcaagaggaatgtcatccggctgatatcaggctttacggga 569 || ||||| || || | | ||||||||||||||| ||| | |||||||||| || || Sbjct: 710 gcgaaggagatattgaccaacaagaggaatgtcattcggatcgtatcaggcttcacaggc 769 Query: 570 cgcacactggagcaggtagagaaagacat 598 ||||| | |||||||||||||||||||| Sbjct: 770 cgcactcctgagcaggtagagaaagacat 798
>gb|AC018727.10| Oryza sativa chromosome 10 BAC OSJNBa0056G17 genomic sequence, complete sequence Length = 139999 Score = 339 bits (171), Expect = 7e-90 Identities = 276/311 (88%) Strand = Plus / Plus Query: 303 ctcagtgcgacaatggctatctacgatgtaatgcagctggtgagggcagatgtatccact 362 ||||| || |||||||| ||||| |||||||||||||| |||||||||||||| |||||| Sbjct: 125770 ctcagcgcaacaatggccatctatgatgtaatgcagctcgtgagggcagatgtttccact 125829 Query: 363 attggaatgggcatagctggatccacagcttctatactccttggtggtggcgcaaagggc 422 |||||| ||||||||||||| ||||| ||||||||| |||||||||||||| |||||||| Sbjct: 125830 attggattgggcatagctggttccactgcttctataatccttggtggtggcacaaagggc 125889 Query: 423 aaacggttcgccatgcccaacaccaggattatgatgcatcagcccgtgggaggcgcgagt 482 || || ||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||| Sbjct: 125890 aagcgattcgccatgcccaacaccaggataatgatccatcagcccgttggaggcgcaagt 125949 Query: 483 ggccaggccttggatgtagaggtccaagccaaggaaattctggctagcaagaggaatgtc 542 || |||||||||||||| |||||||| |||||||| || || ||| ||||||||||||| Sbjct: 125950 gggcaggccttggatgtcgaggtccaggccaaggagatattgactaacaagaggaatgtc 126009 Query: 543 atccggctgatatcaggctttacgggacgcacactggagcaggtagagaaagacatcgat 602 |||||||| |||||||| || || |||||||| | ||||||||| ||||||||||| ||| Sbjct: 126010 atccggcttatatcaggtttcacaggacgcactccggagcaggttgagaaagacattgat 126069 Query: 603 agggaccgata 613 || ||| |||| Sbjct: 126070 agagacagata 126080 Score = 222 bits (112), Expect = 1e-54 Identities = 151/164 (92%) Strand = Plus / Plus Query: 144 ggtgacgtcatgggccttcttctccgggagcgcatcatcttcctcggcaacgagatcgag 203 ||||||||||||||||| || ||||||||||||||| ||||||||||||||||||| ||| Sbjct: 124696 ggtgacgtcatgggcctcctcctccgggagcgcatcgtcttcctcggcaacgagatagag 124755 Query: 204 gacttcctcgccgacgccgtcgtcagccagctcctcctcctcgacgccatggactccgaa 263 ||||||||||||||||| |||||||||||||||||||||||||||||| | ||| || | Sbjct: 124756 gacttcctcgccgacgcagtcgtcagccagctcctcctcctcgacgccgtcgaccccaac 124815 Query: 264 tctgacatccggctcttcgtcaactcccccggtggatcactcag 307 ||||||||||| ||||||||||||||||| || ||||||||||| Sbjct: 124816 tctgacatccgcctcttcgtcaactcccctgggggatcactcag 124859
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 339 bits (171), Expect = 7e-90 Identities = 276/311 (88%) Strand = Plus / Plus Query: 303 ctcagtgcgacaatggctatctacgatgtaatgcagctggtgagggcagatgtatccact 362 ||||| || |||||||| ||||| |||||||||||||| |||||||||||||| |||||| Sbjct: 22671101 ctcagcgcaacaatggccatctatgatgtaatgcagctcgtgagggcagatgtttccact 22671160 Query: 363 attggaatgggcatagctggatccacagcttctatactccttggtggtggcgcaaagggc 422 |||||| ||||||||||||| ||||| ||||||||| |||||||||||||| |||||||| Sbjct: 22671161 attggattgggcatagctggttccactgcttctataatccttggtggtggcacaaagggc 22671220 Query: 423 aaacggttcgccatgcccaacaccaggattatgatgcatcagcccgtgggaggcgcgagt 482 || || ||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||| Sbjct: 22671221 aagcgattcgccatgcccaacaccaggataatgatccatcagcccgttggaggcgcaagt 22671280 Query: 483 ggccaggccttggatgtagaggtccaagccaaggaaattctggctagcaagaggaatgtc 542 || |||||||||||||| |||||||| |||||||| || || ||| ||||||||||||| Sbjct: 22671281 gggcaggccttggatgtcgaggtccaggccaaggagatattgactaacaagaggaatgtc 22671340 Query: 543 atccggctgatatcaggctttacgggacgcacactggagcaggtagagaaagacatcgat 602 |||||||| |||||||| || || |||||||| | ||||||||| ||||||||||| ||| Sbjct: 22671341 atccggcttatatcaggtttcacaggacgcactccggagcaggttgagaaagacattgat 22671400 Query: 603 agggaccgata 613 || ||| |||| Sbjct: 22671401 agagacagata 22671411 Score = 222 bits (112), Expect = 1e-54 Identities = 151/164 (92%) Strand = Plus / Plus Query: 144 ggtgacgtcatgggccttcttctccgggagcgcatcatcttcctcggcaacgagatcgag 203 ||||||||||||||||| || ||||||||||||||| ||||||||||||||||||| ||| Sbjct: 22670027 ggtgacgtcatgggcctcctcctccgggagcgcatcgtcttcctcggcaacgagatagag 22670086 Query: 204 gacttcctcgccgacgccgtcgtcagccagctcctcctcctcgacgccatggactccgaa 263 ||||||||||||||||| |||||||||||||||||||||||||||||| | ||| || | Sbjct: 22670087 gacttcctcgccgacgcagtcgtcagccagctcctcctcctcgacgccgtcgaccccaac 22670146 Query: 264 tctgacatccggctcttcgtcaactcccccggtggatcactcag 307 ||||||||||| ||||||||||||||||| || ||||||||||| Sbjct: 22670147 tctgacatccgcctcttcgtcaactcccctgggggatcactcag 22670190
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 339 bits (171), Expect = 7e-90 Identities = 276/311 (88%) Strand = Plus / Plus Query: 303 ctcagtgcgacaatggctatctacgatgtaatgcagctggtgagggcagatgtatccact 362 ||||| || |||||||| ||||| |||||||||||||| |||||||||||||| |||||| Sbjct: 22683569 ctcagcgcaacaatggccatctatgatgtaatgcagctcgtgagggcagatgtttccact 22683628 Query: 363 attggaatgggcatagctggatccacagcttctatactccttggtggtggcgcaaagggc 422 |||||| ||||||||||||| ||||| ||||||||| |||||||||||||| |||||||| Sbjct: 22683629 attggattgggcatagctggttccactgcttctataatccttggtggtggcacaaagggc 22683688 Query: 423 aaacggttcgccatgcccaacaccaggattatgatgcatcagcccgtgggaggcgcgagt 482 || || ||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||| Sbjct: 22683689 aagcgattcgccatgcccaacaccaggataatgatccatcagcccgttggaggcgcaagt 22683748 Query: 483 ggccaggccttggatgtagaggtccaagccaaggaaattctggctagcaagaggaatgtc 542 || |||||||||||||| |||||||| |||||||| || || ||| ||||||||||||| Sbjct: 22683749 gggcaggccttggatgtcgaggtccaggccaaggagatattgactaacaagaggaatgtc 22683808 Query: 543 atccggctgatatcaggctttacgggacgcacactggagcaggtagagaaagacatcgat 602 |||||||| |||||||| || || |||||||| | ||||||||| ||||||||||| ||| Sbjct: 22683809 atccggcttatatcaggtttcacaggacgcactccggagcaggttgagaaagacattgat 22683868 Query: 603 agggaccgata 613 || ||| |||| Sbjct: 22683869 agagacagata 22683879 Score = 222 bits (112), Expect = 1e-54 Identities = 151/164 (92%) Strand = Plus / Plus Query: 144 ggtgacgtcatgggccttcttctccgggagcgcatcatcttcctcggcaacgagatcgag 203 ||||||||||||||||| || ||||||||||||||| ||||||||||||||||||| ||| Sbjct: 22682495 ggtgacgtcatgggcctcctcctccgggagcgcatcgtcttcctcggcaacgagatagag 22682554 Query: 204 gacttcctcgccgacgccgtcgtcagccagctcctcctcctcgacgccatggactccgaa 263 ||||||||||||||||| |||||||||||||||||||||||||||||| | ||| || | Sbjct: 22682555 gacttcctcgccgacgcagtcgtcagccagctcctcctcctcgacgccgtcgaccccaac 22682614 Query: 264 tctgacatccggctcttcgtcaactcccccggtggatcactcag 307 ||||||||||| ||||||||||||||||| || ||||||||||| Sbjct: 22682615 tctgacatccgcctcttcgtcaactcccctgggggatcactcag 22682658
>dbj|AB127079.1| Streptomyces sp. AP77 apglu77 gene for beta-1,3-glucanase, complete cds Length = 3521 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Minus Query: 171 gagcgcatcatcttcctcggcaacgagatcgaggacttcctcgccgacgccgtcgtcagc 230 ||||| |||||||||||||||| ||||||||| ||| | ||||| ||| |||| || | Sbjct: 2488 gagcggatcatcttcctcggcaccgagatcgacgacggcgtcgccaacgtcgtcatcgcc 2429 Query: 231 cagctcctcc 240 |||||||||| Sbjct: 2428 cagctcctcc 2419
>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome Length = 2364842 Score = 48.1 bits (24), Expect = 0.034 Identities = 27/28 (96%) Strand = Plus / Plus Query: 165 ctccgggagcgcatcatcttcctcggca 192 ||||| |||||||||||||||||||||| Sbjct: 454893 ctccgcgagcgcatcatcttcctcggca 454920
>gb|AY714813.1| Cercopithecine herpesvirus 2, complete genome Length = 150715 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 205 acttcctcgccgacgccgtcgt 226 |||||||||||||||||||||| Sbjct: 99883 acttcctcgccgacgccgtcgt 99862
>ref|XM_784666.1| PREDICTED: Strongylocentrotus purpuratus similar to Centromeric protein E (CENP-E protein) (LOC584818), mRNA Length = 1306 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 500 agaggtccaagccaaggaaatt 521 |||||||||||||||||||||| Sbjct: 234 agaggtccaagccaaggaaatt 255
>gb|AF533768.1| Cercopithecine herpesvirus 1 strain E2490, complete genome Length = 156789 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 205 acttcctcgccgacgccgtcgt 226 |||||||||||||||||||||| Sbjct: 101498 acttcctcgccgacgccgtcgt 101477
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 170 ggagcgcatcatcttcctcggc 191 |||||||||||||||||||||| Sbjct: 1493299 ggagcgcatcatcttcctcggc 1493320 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 171 gagcgcatcatcttcctcggca 192 |||||||||||||||||||||| Sbjct: 1492575 gagcgcatcatcttcctcggca 1492596 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 202 aggacttcctcgccgacgccgtcg 225 ||||||||||||||||| |||||| Sbjct: 310110 aggacttcctcgccgacaccgtcg 310087
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 179 catcttcctcggcaacgagatc 200 |||||||||||||||||||||| Sbjct: 2053209 catcttcctcggcaacgagatc 2053230
>gb|DQ149153.1| Cercopithecine herpesvirus 16 strain X313, complete genome Length = 156487 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 205 acttcctcgccgacgccgtcgt 226 |||||||||||||||||||||| Sbjct: 102211 acttcctcgccgacgccgtcgt 102190
>dbj|AB096160.1| Cercopithecine herpesvirus 1 DNA, UL region, complete sequence Length = 106873 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 205 acttcctcgccgacgccgtcgt 226 |||||||||||||||||||||| Sbjct: 92383 acttcctcgccgacgccgtcgt 92362
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 179 catcttcctcggcaacgagatc 200 |||||||||||||||||||||| Sbjct: 2635829 catcttcctcggcaacgagatc 2635850
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 170 ggagcgcatcatcttcctcggc 191 |||||||||||||||||||||| Sbjct: 2550418 ggagcgcatcatcttcctcggc 2550397
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 168 cgggagcgcatcatcttcctcggca 192 |||||||| |||||||||||||||| Sbjct: 62966 cgggagcggatcatcttcctcggca 62942
>gb|BC031925.1| Mus musculus phosphodiesterase 6A, cGMP-specific, rod, alpha, mRNA (cDNA clone MGC:25111 IMAGE:4501123), complete cds Length = 3278 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 226 tcagccagctcctcctcctcg 246 ||||||||||||||||||||| Sbjct: 1572 tcagccagctcctcctcctcg 1552
>ref|NM_146086.2| Mus musculus phosphodiesterase 6A, cGMP-specific, rod, alpha (Pde6a), mRNA Length = 4230 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 226 tcagccagctcctcctcctcg 246 ||||||||||||||||||||| Sbjct: 1572 tcagccagctcctcctcctcg 1552
>ref|XM_994360.1| PREDICTED: Mus musculus similar to phosphodiesterase 6A, cGMP-specific, rod, alpha (LOC672557), mRNA Length = 2477 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 226 tcagccagctcctcctcctcg 246 ||||||||||||||||||||| Sbjct: 1588 tcagccagctcctcctcctcg 1568
>gb|AC121903.2| Mus musculus BAC clone RP24-174G24 from 18, complete sequence Length = 172114 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 226 tcagccagctcctcctcctcg 246 ||||||||||||||||||||| Sbjct: 99889 tcagccagctcctcctcctcg 99909
>gb|BC044892.1| Mus musculus phosphodiesterase 6A, cGMP-specific, rod, alpha, mRNA (cDNA clone MGC:25410 IMAGE:4527430), complete cds Length = 4230 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 226 tcagccagctcctcctcctcg 246 ||||||||||||||||||||| Sbjct: 1572 tcagccagctcctcctcctcg 1552
>gb|AC098966.3| Homo sapiens chromosome 16 clone RP11-465H19, complete sequence Length = 164925 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 13 atcccctcctcaagctgaacc 33 ||||||||||||||||||||| Sbjct: 4891 atcccctcctcaagctgaacc 4911
>gb|AC092142.5| Homo sapiens chromosome 16 clone RP11-510J16, complete sequence Length = 177306 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 13 atcccctcctcaagctgaacc 33 ||||||||||||||||||||| Sbjct: 159696 atcccctcctcaagctgaacc 159716
>ref|XM_225895.3| PREDICTED: Rattus norvegicus phosphodiesterase 6A, cGMP-specific, rod, alpha (predicted) (Pde6a_predicted), mRNA Length = 2587 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 226 tcagccagctcctcctcctcg 246 ||||||||||||||||||||| Sbjct: 1470 tcagccagctcctcctcctcg 1450
>emb|X60664.1|MMPA Murine MPA gene for rod phosphodiesterase alpha-subunit Length = 3221 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 226 tcagccagctcctcctcctcg 246 ||||||||||||||||||||| Sbjct: 1580 tcagccagctcctcctcctcg 1560
>ref|XM_363163.1| Magnaporthe grisea 70-15 hypothetical protein (MG08747.4) partial cds Length = 672 Score = 40.1 bits (20), Expect = 8.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 212 cgccgacgccgtcgtcagccagctcctcctcc 243 ||||| |||||||||||||| |||||||||| Sbjct: 78 cgccgccgccgtcgtcagccgcctcctcctcc 109
>ref|XM_367220.1| Magnaporthe grisea 70-15 hypothetical protein (MG07145.4) partial mRNA Length = 2301 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 ccagctcctcctcctcgacg 249 |||||||||||||||||||| Sbjct: 1312 ccagctcctcctcctcgacg 1293
>gb|AF039043.1| Caenorhabditis elegans cosmid F39C12, complete sequence Length = 40233 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 513 aaggaaattctggctagcaa 532 |||||||||||||||||||| Sbjct: 18286 aaggaaattctggctagcaa 18305
>emb|AL732602.5| Human DNA sequence from clone RP11-517D11 on chromosome X Contains the 3' end of a aldo-keto reductase family 1 member B1 (aldose reductase) (AKR1B1) pseudogene, a apoptosis inhibitor 5 (API5) pseudogene and the AGTR2 gene for type 2 angiotensin II receptor, complete sequence Length = 145388 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 582 caggtagagaaagacatcga 601 |||||||||||||||||||| Sbjct: 90503 caggtagagaaagacatcga 90484
>emb|X57144.1|HHRNAPOP H. halobium RNA polymerase subunit operon Length = 11208 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 agctcctcctcctcgacgcc 251 |||||||||||||||||||| Sbjct: 3582 agctcctcctcctcgacgcc 3563
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 acttcctcgccgacgccgtc 224 |||||||||||||||||||| Sbjct: 4030292 acttcctcgccgacgccgtc 4030311
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 93 gagggccaaggcatccgagcggag 116 |||||||||||||||||| ||||| Sbjct: 2510640 gagggccaaggcatccgaccggag 2510617
>ref|XM_683910.1| PREDICTED: Danio rerio similar to hyperpolarization-activated, cyclic nucleotide-gated K+ 4 (LOC560503), mRNA Length = 876 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 ccttcttctccgggagcgca 177 |||||||||||||||||||| Sbjct: 571 ccttcttctccgggagcgca 552
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 cttcctcggcaacgagatcg 201 |||||||||||||||||||| Sbjct: 2232065 cttcctcggcaacgagatcg 2232046
>gb|AF275631.1|AF275631 Phanerochaete chrysosporium lipE/lipA intergenic region Length = 13152 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 cgcggcggccatgtctcctc 81 |||||||||||||||||||| Sbjct: 5276 cgcggcggccatgtctcctc 5295
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 tcctcggcaacgagatcgag 203 |||||||||||||||||||| Sbjct: 8505886 tcctcggcaacgagatcgag 8505867
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 tcctcgacgccatggactcc 260 |||||||||||||||||||| Sbjct: 1349644 tcctcgacgccatggactcc 1349663
>gb|AE005138.1| Halobacterium sp. NRC-1 section 169 of 170 of the complete genome Length = 10529 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 agctcctcctcctcgacgcc 251 |||||||||||||||||||| Sbjct: 8251 agctcctcctcctcgacgcc 8270
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 44 cgcggcttcggcatcgtccgcggcggcc 71 |||||||||||| |||| |||||||||| Sbjct: 1011250 cgcggcttcggcgtcgtgcgcggcggcc 1011277
>emb|AL808143.5| Mouse DNA sequence from clone RP23-384K11 on chromosome 2, complete sequence Length = 202474 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 catgtctcctctgtcccggt 90 |||||||||||||||||||| Sbjct: 189109 catgtctcctctgtcccggt 189128
>gb|AY832046.1| Amborella trichopoda cytochrome c biogenesis ccmC (ccmC) gene, partial cds; mitochondrial Length = 628 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 cactattggaatgggcatag 378 |||||||||||||||||||| Sbjct: 506 cactattggaatgggcatag 487 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,974,173 Number of Sequences: 3902068 Number of extensions: 4974173 Number of successful extensions: 94979 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 93846 Number of HSP's gapped (non-prelim): 1131 length of query: 615 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 592 effective length of database: 17,143,297,704 effective search space: 10148832240768 effective search space used: 10148832240768 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
