>YTHD1_MOUSE (P59326) YTH domain protein 1 (Dermatomyositis associated with|
           cancer putative autoantigen 1 homolog) (DACA-1 homolog)
          Length = 559

 Score = 99.8 bits (247), Expect = 6e-21
 Identities = 46/79 (58%), Positives = 58/79 (73%)
 Frame = +3

Query: 39  NKXKWNGSFSVKWHIVKDVPNNILKHIVLENNEGKPVTNSRDTQDINLEQGIQMLKIFKE 218
           ++ KW G F VKW  VKDVPNN L+HI LENN+ KPVTNSRDTQ++ LE+  Q+LKI   
Sbjct: 466 SQDKWKGKFDVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIAS 525

Query: 219 HVSKTSILEDFTFYENRQK 275
           +   TSI +DF+ YE RQ+
Sbjct: 526 YKHTTSIFDDFSHYEKRQE 544

>YTHD1_HUMAN (Q9BYJ9) YTH domain protein 1 (Dermatomyositis associated with|
           cancer putative autoantigen 1) (DACA-1)
          Length = 559

 Score = 98.2 bits (243), Expect = 2e-20
 Identities = 45/79 (56%), Positives = 57/79 (72%)
 Frame = +3

Query: 39  NKXKWNGSFSVKWHIVKDVPNNILKHIVLENNEGKPVTNSRDTQDINLEQGIQMLKIFKE 218
           ++ KW G F V+W  VKDVPNN L+HI LENN+ KPVTNSRDTQ++ LE+  Q+LKI   
Sbjct: 466 SQDKWKGKFDVQWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIISS 525

Query: 219 HVSKTSILEDFTFYENRQK 275
           +   TSI +DF  YE RQ+
Sbjct: 526 YKHTTSIFDDFAHYEKRQE 544

>YTHD3_PONPY (Q5RFL8) YTH domain protein 3|
          Length = 585

 Score = 97.8 bits (242), Expect = 2e-20
 Identities = 46/79 (58%), Positives = 56/79 (70%)
 Frame = +3

Query: 39  NKXKWNGSFSVKWHIVKDVPNNILKHIVLENNEGKPVTNSRDTQDINLEQGIQMLKIFKE 218
           ++ KW G F VKW  VKDVPNN L+HI LENN+ KPVTNSRDTQ++ LE+  Q+LKI   
Sbjct: 493 SQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIAT 552

Query: 219 HVSKTSILEDFTFYENRQK 275
               TSI +DF  YE RQ+
Sbjct: 553 FKHTTSIFDDFAHYEKRQE 571

>YTHD3_MOUSE (Q8BYK6) YTH domain protein 3|
          Length = 585

 Score = 97.8 bits (242), Expect = 2e-20
 Identities = 46/79 (58%), Positives = 56/79 (70%)
 Frame = +3

Query: 39  NKXKWNGSFSVKWHIVKDVPNNILKHIVLENNEGKPVTNSRDTQDINLEQGIQMLKIFKE 218
           ++ KW G F VKW  VKDVPNN L+HI LENN+ KPVTNSRDTQ++ LE+  Q+LKI   
Sbjct: 493 SQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIAT 552

Query: 219 HVSKTSILEDFTFYENRQK 275
               TSI +DF  YE RQ+
Sbjct: 553 FKHTTSIFDDFAHYEKRQE 571

>YTHD3_HUMAN (Q7Z739) YTH domain protein 3|
          Length = 585

 Score = 97.8 bits (242), Expect = 2e-20
 Identities = 46/79 (58%), Positives = 56/79 (70%)
 Frame = +3

Query: 39  NKXKWNGSFSVKWHIVKDVPNNILKHIVLENNEGKPVTNSRDTQDINLEQGIQMLKIFKE 218
           ++ KW G F VKW  VKDVPNN L+HI LENN+ KPVTNSRDTQ++ LE+  Q+LKI   
Sbjct: 493 SQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIAT 552

Query: 219 HVSKTSILEDFTFYENRQK 275
               TSI +DF  YE RQ+
Sbjct: 553 FKHTTSIFDDFAHYEKRQE 571

>YTHD2_HUMAN (Q9Y5A9) YTH domain protein 2 (High-glucose-regulated protein 8)|
           (NY-REN-2 antigen) (CLL-associated antigen KW-14)
          Length = 579

 Score = 97.4 bits (241), Expect = 3e-20
 Identities = 45/79 (56%), Positives = 58/79 (73%)
 Frame = +3

Query: 39  NKXKWNGSFSVKWHIVKDVPNNILKHIVLENNEGKPVTNSRDTQDINLEQGIQMLKIFKE 218
           ++ KW G F V+W  VKDVPN+ L+HI LENNE KPVTNSRDTQ++ LE+  Q+LKI   
Sbjct: 487 SQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIAS 546

Query: 219 HVSKTSILEDFTFYENRQK 275
           +   TSI +DF+ YE RQ+
Sbjct: 547 YKHTTSIFDDFSHYEKRQE 565

>YTDC1_RAT (Q9QY02) YTH domain-containing protein 1 (Putative splicing factor|
           YT521) (RA301-binding protein)
          Length = 738

 Score = 37.4 bits (85), Expect = 0.039
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = +3

Query: 57  GSFSVKWHIVKDVPNNILKHIVLENNEGKPVTNSRDTQDINLEQGIQMLKIF 212
           G F + W   +++P     H+    NE KPV   RD Q+I LE G Q+  +F
Sbjct: 444 GVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCLLF 495

>YTDC1_HUMAN (Q96MU7) YTH domain-containing protein 1 (Putative splicing factor|
           YT521)
          Length = 727

 Score = 37.4 bits (85), Expect = 0.039
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = +3

Query: 57  GSFSVKWHIVKDVPNNILKHIVLENNEGKPVTNSRDTQDINLEQGIQMLKIF 212
           G F + W   +++P     H+    NE KPV   RD Q+I LE G Q+  +F
Sbjct: 441 GVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCLLF 492

>CAN2_CHICK (Q92178) Calpain-2 catalytic subunit precursor (EC 3.4.22.53)|
           (Calpain-2 large subunit) (Calcium-activated neutral
           proteinase 2) (CANP 2) (Calpain M-type) (M-calpain)
           (Millimolar-calpain)
          Length = 699

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 20/104 (19%), Positives = 41/104 (39%)
 Frame = +3

Query: 72  KWHIVKDVPNNILKHIVLENNEGKPVTNSRDTQDINLEQGIQMLKIFKEHVSKTSILEDF 251
           +W+ ++  P N+ K I     +G  +  S D       + +   K+ K H    +  E+ 
Sbjct: 212 EWYELQKAPPNLFKIIQKALQKGSLLGCSIDITSAAETEAVTSQKLVKGHAYSVTGAEEV 271

Query: 252 TFYENRQKLMQEKRXXXXXXXXXVWDSRAPNLVAGEKQQEPKVT 383
            F  + QKL++ +           W+   PN    + +   ++T
Sbjct: 272 NFRGSIQKLIRIRNPWGEVEWTGKWNDNCPNWSGVDPEVRERLT 315

>YFEI_CAEEL (P83502) Hypothetical protein T04A11.12|
          Length = 327

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = -2

Query: 439 FGFPLMASCCFSPLT-PFGTVTFG--SCCFSPATRFGALLSHTCFWICCCFI 293
           F FP +  C ++    PFG + F      F     F +LL +T FW+ CC I
Sbjct: 173 FMFPAIGYCSYAAYPFPFGAIIFRIERTFFGLVNNF-SLLFNTLFWMTCCII 223

>GNPTA_HUMAN (Q3T906) N-acetylglucosamine-1-phosphotransferase subunits|
           alpha/beta precursor (EC 2.7.8.17)
           (GlcNAc-1-phosphotransferase alpha/beta subunits)
           (UDP-N-acetylglucosamine-1-phosphotransferase alpha/beta
           subunits) (Stealth protein GNPTAB) [Conta
          Length = 1256

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 25/105 (23%), Positives = 46/105 (43%)
 Frame = +3

Query: 156 SRDTQDINLEQGIQMLKIFKEHVSKTSILEDFTFYENRQKLMQEKRXXXXXXXXXVWDSR 335
           S +T D+ LE G   LK +  ++SK+++L  F       K+  +           + D  
Sbjct: 710 SLNTLDLQLEHGDITLKGY--NLSKSALLRSFLMNSQHAKIKNQ---------AIITDET 758

Query: 336 APNLVAGEKQQEPKVTVPNGVNGEKQQDAINGKPKSPVANGVNGG 470
             +LVA +++Q  K  +PN +   ++   +     S   NG + G
Sbjct: 759 NDSLVAPQEKQVHKSILPNSLGVSERLQRLTFPAVSVKVNGHDQG 803

>Y655_ARCFU (O29602) Hypothetical protein AF0655|
          Length = 425

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 11/40 (27%), Positives = 25/40 (62%)
 Frame = +3

Query: 159 RDTQDINLEQGIQMLKIFKEHVSKTSILEDFTFYENRQKL 278
           RD QD+++E+ +++LK  ++ +    +     ++ENR+ L
Sbjct: 87  RDPQDMSIEEKVELLKDLEKIIRDVCVSTKLVYFENRRVL 126


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,611,359
Number of Sequences: 219361
Number of extensions: 1358567
Number of successful extensions: 4372
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4365
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6200242422
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)