Clone Information

BLAST Search Result

Clone Name	baal30i16
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	CB23_ORYSA (P27519) Chlorophyll a-b binding protein, chloroplast...	166	2e-41
2	CB24_LYCES (P14278) Chlorophyll a-b binding protein 4, chloropla...	124	8e-29
3	CB26_PETSP (P12062) Chlorophyll a-b binding protein 37, chloropl...	123	1e-28
4	CB23_TOBAC (P27494) Chlorophyll a-b binding protein 36, chloropl...	123	1e-28
5	CB21_SILPR (P12332) Chlorophyll a-b binding protein, chloroplast...	123	1e-28
6	CB21_LEMGI (P12328) Chlorophyll a-b binding protein of LHCII typ...	121	4e-28
7	CB21_PINTH (P10049) Chlorophyll a-b binding protein type I, chlo...	119	2e-27
8	CB23_PEA (P27520) Chlorophyll a-b binding protein 215, chloropla...	117	7e-27
9	CB21_GOSHI (P27518) Chlorophyll a-b binding protein 151, chlorop...	114	6e-26
10	CB25_LYCES (P14279) Chlorophyll a-b binding protein 5, chloropla...	113	1e-25
11	CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloropl...	95	4e-20
12	CB21_MAIZE (P12329) Chlorophyll a-b binding protein 1, chloropla...	95	5e-20
13	CB21_PETSP (P04779) Chlorophyll a-b binding protein 13, chloropl...	92	3e-19
14	CB23_APIGR (P92919) Chlorophyll a-b binding protein, chloroplast...	91	7e-19
15	CB25_NICPL (P12470) Chlorophyll a-b binding protein E, chloropla...	91	7e-19
16	CB21_TOBAC (P27492) Chlorophyll a-b binding protein 16, chloropl...	91	7e-19
17	CB22_TOBAC (P27493) Chlorophyll a-b binding protein 21, chloropl...	91	7e-19
18	CB25_TOBAC (P27496) Chlorophyll a-b binding protein 50, chloropl...	91	1e-18
19	CB24_PETSP (P04782) Chlorophyll a-b binding protein 25, chloropl...	90	2e-18
20	CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloropl...	89	3e-18
21	CB21_SINAL (P13851) Chlorophyll a-b binding protein 1, chloropla...	89	4e-18
22	CB2G_LYCES (P07369) Chlorophyll a-b binding protein 3C, chloropl...	89	4e-18
23	CB23_NICPL (P12469) Chlorophyll a-b binding protein C, chloropla...	88	5e-18
24	CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloropla...	88	5e-18
25	CB23_PETSP (P04781) Chlorophyll a-b binding protein 22R, chlorop...	88	6e-18
26	CB28_PEA (P27490) Chlorophyll a-b binding protein 8, chloroplast...	87	8e-18
27	CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast...	87	8e-18
28	CB25_PETSP (P04783) Chlorophyll a-b binding protein 91R, chlorop...	87	8e-18
29	CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180, chl...	87	8e-18
30	CB23_SOYBN (P09756) Chlorophyll a-b binding protein 3, chloropla...	87	1e-17
31	CB23_LYCES (P27489) Chlorophyll a-b binding protein 13, chloropl...	87	1e-17
32	CB2_PHYPA (P20866) Chlorophyll a-b binding protein, chloroplast ...	86	2e-17
33	CB21_SOYBN (P12471) Chlorophyll a-b binding protein, chloroplast...	86	2e-17
34	CB22_PETSP (P04780) Chlorophyll a-b binding protein 22L, chlorop...	86	3e-17
35	CB22_HORVU (P08963) Chlorophyll a-b binding protein 2, chloropla...	85	4e-17
36	CB23_HORVU (P27523) Chlorophyll a-b binding protein of LHCII typ...	85	5e-17
37	CB27_TOBAC (P27491) Chlorophyll a-b binding protein 7, chloropla...	85	5e-17
38	CB23_POLMU (P15195) Chlorophyll a-b binding protein type 1 membe...	84	9e-17
39	CB2A_PYRPY (P24006) Chlorophyll a-b binding protein 1A, chloropl...	84	1e-16
40	CB2A_PINSY (P15193) Chlorophyll a-b binding protein type 2 membe...	83	2e-16
41	CB21_CUCSA (P08221) Chlorophyll a-b binding protein of LHCII typ...	83	2e-16
42	CB21_WHEAT (P04784) Chlorophyll a-b binding protein, chloroplast...	83	2e-16
43	CB22_PEA (P07371) Chlorophyll a-b binding protein AB80, chloropl...	82	3e-16
44	CB2B_PINSY (P15194) Chlorophyll a-b binding protein type 2 membe...	82	3e-16
45	CB22_MAIZE (P06671) Chlorophyll a-b binding protein, chloroplast...	81	8e-16
46	CB29_MAIZE (P27497) Chlorophyll a-b binding protein M9, chloropl...	80	1e-15
47	CB2_CHLMO (P22686) Chlorophyll a-b binding protein of LHCII type...	79	2e-15
48	CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloropla...	79	4e-15
49	CB48_MAIZE (Q00827) Chlorophyll a-b binding protein 48, chloropl...	76	2e-14
50	CB21_ORYSA (P12330) Chlorophyll a-b binding protein 1, chloropla...	76	2e-14
51	CB21_PEA (P04159) Chlorophyll a-b binding protein AB96 (LHCII ty...	76	2e-14
52	CB2_DUNTE (P27517) Chlorophyll a-b binding protein of LHCII type...	74	7e-14
53	CB2_CHLRE (P14273) Chlorophyll a-b binding protein of LHCII type...	70	1e-12
54	CB2_MALDO (P15773) Chlorophyll a-b binding protein AB10, chlorop...	65	6e-11
55	CB22_SOYBN (P09755) Chlorophyll a-b binding protein 2, chloropla...	64	8e-11
56	CB22_CUCSA (P08222) Chlorophyll a-b binding protein of LHCII typ...	54	8e-08
57	CB2_DUNSA (P20865) Chlorophyll a-b binding protein of LHCII type...	45	4e-05
58	CB26_ARATH (Q9XF89) Chlorophyll a-b binding protein CP26, chloro...	37	0.010
59	GNTP_ECOLI (P0AC94) High-affinity gluconate transporter (Glucona...	31	0.70
60	GNTP_ECO57 (P0AC95) High-affinity gluconate transporter (Glucona...	31	0.70
61	KPRB_RAT (O08618) Phosphoribosyl pyrophosphate synthetase-associ...	31	0.92
62	KPRB_MOUSE (Q8R574) Phosphoribosyl pyrophosphate synthetase-asso...	31	0.92
63	KPRB_HUMAN (O60256) Phosphoribosyl pyrophosphate synthetase-asso...	31	0.92
64	DACT2_BRARE (Q673G8) Dapper homolog 2 (Frodo 2)	31	0.92
65	CB13_LYCES (P27522) Chlorophyll a-b binding protein 8, chloropla...	31	0.92
66	LH15_EUGGR (P08975) Light-harvesting complex I LH35 proteins pre...	30	2.0
67	ENP1_RAT (P97687) Ectonucleoside triphosphate diphosphohydrolase...	29	2.7
68	DHE4_SACBA (Q8TFF6) NADP-specific glutamate dehydrogenase 1 (EC ...	29	2.7
69	CB11_LYCES (P12360) Chlorophyll a-b binding protein 6A, chloropl...	29	3.5
70	LH18_EUGGR (P08976) Light-harvesting complex I LH38 proteins pre...	28	4.6
71	VP40_EBV (P03234) Capsid protein P40 (Virion structural protein ...	28	6.0
72	TEGU_EBV (P03186) Large tegument protein	28	7.8
73	RNC_SYMTH (Q67PF5) Ribonuclease III (EC 3.1.26.3) (RNase III)	28	7.8

>CB23_ORYSA (P27519) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 263

 Score =  166 bits (419), Expect = 2e-41
 Identities = 79/84 (94%), Positives = 80/84 (95%)
 Frame = +2

Query: 41  MAASALHQTTSFLGTAPRRDDLVRSVGDFGGRITMRRTVKSAPQSIWYGPDRAKYLGPFS 220
           MAASALHQTTSFLGTAPRRD+LVR VGD GGRITMRRTVKSAPQSIWYGPDR KYLGPFS
Sbjct: 1   MAASALHQTTSFLGTAPRRDELVRRVGDSGGRITMRRTVKSAPQSIWYGPDRPKYLGPFS 60

Query: 221 EQTPSYLTGEFPGDYGWDTAXLSA 292
           EQTPSYLTGEFPGDYGWDTA LSA
Sbjct: 61  EQTPSYLTGEFPGDYGWDTAGLSA 84

to top

>CB24_LYCES (P14278) Chlorophyll a-b binding protein 4, chloroplast precursor|
           (LHCII type I CAB-4) (LHCP)
          Length = 265

 Score =  124 bits (310), Expect = 8e-29
 Identities = 63/87 (72%), Positives = 72/87 (82%), Gaps = 3/87 (3%)
 Frame = +2

Query: 41  MAASALHQTTSFLGTA--PRRDDLVRSVGDFG-GRITMRRTVKSAPQSIWYGPDRAKYLG 211
           MA  A+ Q+ +F+G A    +++ +R VG+FG GRITMRRTVKSAPQSIWYG DR KYLG
Sbjct: 1   MATCAIQQS-AFVGQAVGKSQNEFIRKVGNFGEGRITMRRTVKSAPQSIWYGEDRPKYLG 59

Query: 212 PFSEQTPSYLTGEFPGDYGWDTAXLSA 292
           PFSEQTPSYLTGEFPGDYGWDTA LSA
Sbjct: 60  PFSEQTPSYLTGEFPGDYGWDTAGLSA 86

to top

>CB26_PETSP (P12062) Chlorophyll a-b binding protein 37, chloroplast precursor|
           (LHCII type I CAB-37) (LHCP)
          Length = 265

 Score =  123 bits (309), Expect = 1e-28
 Identities = 63/86 (73%), Positives = 70/86 (81%), Gaps = 2/86 (2%)
 Frame = +2

Query: 41  MAASALHQTTSFLGTAPR-RDDLVRSVGDFGG-RITMRRTVKSAPQSIWYGPDRAKYLGP 214
           MA SA+ Q+     TA + +++LVR +G FGG R TMRRTVKSAPQSIWYG DR KYLGP
Sbjct: 1   MATSAIQQSAFAGQTALKSQNELVRKIGSFGGGRATMRRTVKSAPQSIWYGEDRPKYLGP 60

Query: 215 FSEQTPSYLTGEFPGDYGWDTAXLSA 292
           FSEQTPSYLTGEFPGDYGWDTA LSA
Sbjct: 61  FSEQTPSYLTGEFPGDYGWDTAGLSA 86

to top

>CB23_TOBAC (P27494) Chlorophyll a-b binding protein 36, chloroplast precursor|
           (LHCII type I CAB-36) (LHCP)
          Length = 265

 Score =  123 bits (309), Expect = 1e-28
 Identities = 63/86 (73%), Positives = 70/86 (81%), Gaps = 2/86 (2%)
 Frame = +2

Query: 41  MAASALHQTTSFLGTAPR-RDDLVRSVGDF-GGRITMRRTVKSAPQSIWYGPDRAKYLGP 214
           MA SA+ Q+     TA + +++LVR +G F GGR TMRRTVKSAPQSIWYG DR KYLGP
Sbjct: 1   MATSAIEQSAFAGQTALKSQNELVRKIGSFNGGRATMRRTVKSAPQSIWYGEDRPKYLGP 60

Query: 215 FSEQTPSYLTGEFPGDYGWDTAXLSA 292
           FSEQTPSYLTGEFPGDYGWDTA LSA
Sbjct: 61  FSEQTPSYLTGEFPGDYGWDTAGLSA 86

to top

>CB21_SILPR (P12332) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP) (Fragment)
          Length = 205

 Score =  123 bits (309), Expect = 1e-28
 Identities = 60/86 (69%), Positives = 70/86 (81%), Gaps = 2/86 (2%)
 Frame = +2

Query: 41  MAASALHQTTSFLGTA--PRRDDLVRSVGDFGGRITMRRTVKSAPQSIWYGPDRAKYLGP 214
           MA S + Q+ +F G      +++LVR VG  GGR++MRRT+KSAP+SIWYGPDR KYLGP
Sbjct: 1   MATSTIQQS-AFAGQTLLKPQNELVRKVGGNGGRVSMRRTIKSAPESIWYGPDRPKYLGP 59

Query: 215 FSEQTPSYLTGEFPGDYGWDTAXLSA 292
           FSEQTPSYLTGEFPGDYGWDTA LSA
Sbjct: 60  FSEQTPSYLTGEFPGDYGWDTAGLSA 85

to top

>CB21_LEMGI (P12328) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP)
          Length = 264

 Score =  121 bits (304), Expect = 4e-28
 Identities = 61/86 (70%), Positives = 70/86 (81%), Gaps = 2/86 (2%)
 Frame = +2

Query: 41  MAASALHQTTSFLGTAP--RRDDLVRSVGDFGGRITMRRTVKSAPQSIWYGPDRAKYLGP 214
           MAASA+ Q+++F G     +RD+LVR VG   GR +MRRTVK+ PQSIWYG DR K+LGP
Sbjct: 1   MAASAI-QSSAFAGQTALKQRDELVRKVGVSDGRFSMRRTVKAVPQSIWYGADRPKFLGP 59

Query: 215 FSEQTPSYLTGEFPGDYGWDTAXLSA 292
           FSEQTPSYLTGEFPGDYGWDTA LSA
Sbjct: 60  FSEQTPSYLTGEFPGDYGWDTAGLSA 85

to top

>CB21_PINTH (P10049) Chlorophyll a-b binding protein type I, chloroplast|
           precursor (CAB) (LHCP)
          Length = 266

 Score =  119 bits (299), Expect = 2e-27
 Identities = 57/87 (65%), Positives = 69/87 (79%), Gaps = 3/87 (3%)
 Frame = +2

Query: 41  MAASALHQTTSFLGTA---PRRDDLVRSVGDFGGRITMRRTVKSAPQSIWYGPDRAKYLG 211
           MA ++  Q++S  G     P++++LV+ VG    RITMRRTV+SAP+SIWYGPDR KYLG
Sbjct: 1   MATASAIQSSSLAGQTLLRPQQNELVKKVGTAQARITMRRTVRSAPESIWYGPDRPKYLG 60

Query: 212 PFSEQTPSYLTGEFPGDYGWDTAXLSA 292
           PFSE TPSYLTGEFPGDYGWDTA +SA
Sbjct: 61  PFSEGTPSYLTGEFPGDYGWDTAAVSA 87

to top

>CB23_PEA (P27520) Chlorophyll a-b binding protein 215, chloroplast precursor|
           (LHCII type II CAB-215) (LHCP)
          Length = 265

 Score =  117 bits (293), Expect = 7e-27
 Identities = 60/87 (68%), Positives = 68/87 (78%), Gaps = 3/87 (3%)
 Frame = +2

Query: 41  MAASALHQTTSFLGTAPRR--DDLVRSVGDFG-GRITMRRTVKSAPQSIWYGPDRAKYLG 211
           MA SA+ Q+ +F G    R  ++ +R  G+FG  R TMRRTVKSAP+SIWYGPDR KYLG
Sbjct: 1   MATSAIQQS-AFTGKTGLRQGNEFIRKRGNFGQARFTMRRTVKSAPESIWYGPDRPKYLG 59

Query: 212 PFSEQTPSYLTGEFPGDYGWDTAXLSA 292
           PFSEQ PSYLTGEFPGDYGWDTA LSA
Sbjct: 60  PFSEQIPSYLTGEFPGDYGWDTAGLSA 86

to top

>CB21_GOSHI (P27518) Chlorophyll a-b binding protein 151, chloroplast precursor|
           (LHCII type II CAB-151) (LHCP)
          Length = 265

 Score =  114 bits (285), Expect = 6e-26
 Identities = 58/86 (67%), Positives = 68/86 (79%), Gaps = 2/86 (2%)
 Frame = +2

Query: 41  MAASALHQTTSFLGTAPRR-DDLVRSVGDFGG-RITMRRTVKSAPQSIWYGPDRAKYLGP 214
           MA SA+ Q+     TA ++ ++LV  +G  GG R++MRRTVKSAP SIWYGPDR KYLGP
Sbjct: 1   MATSAIQQSAFAGQTALKQSNELVCKIGAVGGGRVSMRRTVKSAPTSIWYGPDRPKYLGP 60

Query: 215 FSEQTPSYLTGEFPGDYGWDTAXLSA 292
           FS+Q PSYLTGEFPGDYGWDTA LSA
Sbjct: 61  FSDQIPSYLTGEFPGDYGWDTAGLSA 86

to top

>CB25_LYCES (P14279) Chlorophyll a-b binding protein 5, chloroplast precursor|
           (LHCII type I CAB-5) (LHCP) (Fragment)
          Length = 237

 Score =  113 bits (282), Expect = 1e-25
 Identities = 51/55 (92%), Positives = 52/55 (94%)
 Frame = +2

Query: 128 GGRITMRRTVKSAPQSIWYGPDRAKYLGPFSEQTPSYLTGEFPGDYGWDTAXLSA 292
           GGR+TMRRTVKSAPQSIWYG DR KYLGPFSEQTPSYLTGEFPGDYGWDTA LSA
Sbjct: 4   GGRVTMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSA 58

to top

>CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloroplast precursor|
           (LHCII type I CAB-1B) (LHCP)
          Length = 265

 Score = 95.1 bits (235), Expect = 4e-20
 Identities = 51/85 (60%), Positives = 58/85 (68%), Gaps = 2/85 (2%)
 Frame = +2

Query: 44  AASALHQTTSFLGTAPRRDDLVRSVGDFGGRITMRRTV-KSAPQSI-WYGPDRAKYLGPF 217
           AA+    + SF G A +       +    GRITMR+ V KSAP S  WYGPDR KYLGPF
Sbjct: 3   AATMALSSPSFAGQAVKLSPSASEISG-NGRITMRKAVAKSAPSSSPWYGPDRVKYLGPF 61

Query: 218 SEQTPSYLTGEFPGDYGWDTAXLSA 292
           S ++PSYLTGEFPGDYGWDTA LSA
Sbjct: 62  SGESPSYLTGEFPGDYGWDTAGLSA 86

to top

>CB21_MAIZE (P12329) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 262

 Score = 94.7 bits (234), Expect = 5e-20
 Identities = 52/89 (58%), Positives = 61/89 (68%), Gaps = 5/89 (5%)
 Frame = +2

Query: 41  MAASALHQTTSFLGTAPRRDDLVRSVGDFG-GRITMRRTVK----SAPQSIWYGPDRAKY 205
           MAAS +  +++ +   P +      VG FG GRITMR+TV     +A  S WYGPDR KY
Sbjct: 1   MAASTMAISSTAMAGTPIK------VGSFGEGRITMRKTVGKPKVAASGSPWYGPDRVKY 54

Query: 206 LGPFSEQTPSYLTGEFPGDYGWDTAXLSA 292
           LGPFS + PSYLTGEFPGDYGWDTA LSA
Sbjct: 55  LGPFSGEPPSYLTGEFPGDYGWDTAGLSA 83

to top

>CB21_PETSP (P04779) Chlorophyll a-b binding protein 13, chloroplast precursor|
           (LHCII type I CAB-13) (LHCP)
          Length = 266

 Score = 92.0 bits (227), Expect = 3e-19
 Identities = 49/90 (54%), Positives = 59/90 (65%), Gaps = 7/90 (7%)
 Frame = +2

Query: 44  AASALHQTTSFLGTA---PRRDDLVRSVGDFGGRITMRRTVKSAPQ----SIWYGPDRAK 202
           AA+    ++SF G A   P   ++ R+     G++TMR+TV  A      S WYGPDR K
Sbjct: 3   AATMALSSSSFAGKAVNVPSSSEITRN-----GKVTMRKTVTKAKPVSSGSPWYGPDRVK 57

Query: 203 YLGPFSEQTPSYLTGEFPGDYGWDTAXLSA 292
           YLGPFS + PSYLTGEFPGDYGWDTA LSA
Sbjct: 58  YLGPFSGEAPSYLTGEFPGDYGWDTAGLSA 87

to top

>CB23_APIGR (P92919) Chlorophyll a-b binding protein, chloroplast precursor|
           (Allergen Api g 3)
          Length = 264

 Score = 90.9 bits (224), Expect = 7e-19
 Identities = 41/55 (74%), Positives = 46/55 (83%), Gaps = 1/55 (1%)
 Frame = +2

Query: 131 GRITMRRTVKS-APQSIWYGPDRAKYLGPFSEQTPSYLTGEFPGDYGWDTAXLSA 292
           GR++MR+TVK+    S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTA LSA
Sbjct: 31  GRVSMRKTVKAPVSDSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSA 85

to top

>CB25_NICPL (P12470) Chlorophyll a-b binding protein E, chloroplast precursor|
           (LHCII type I CAB-E) (LHCP)
          Length = 266

 Score = 90.9 bits (224), Expect = 7e-19
 Identities = 48/88 (54%), Positives = 56/88 (63%), Gaps = 4/88 (4%)
 Frame = +2

Query: 41  MAASALHQTTSFLGTAPRRDDLVRSVGDFGGRITMRRTVKSAPQ----SIWYGPDRAKYL 208
           MAAS    ++ F G A +       V    G++TMR+T   A      S WYGPDR KYL
Sbjct: 1   MAASTTALSSPFAGKAVKLSPSSSEVTG-NGKVTMRKTANKAKPVSSGSPWYGPDRVKYL 59

Query: 209 GPFSEQTPSYLTGEFPGDYGWDTAXLSA 292
           GPFS ++PSYLTGEFPGDYGWDTA LSA
Sbjct: 60  GPFSGESPSYLTGEFPGDYGWDTAGLSA 87

to top

>CB21_TOBAC (P27492) Chlorophyll a-b binding protein 16, chloroplast precursor|
           (LHCII type I CAB-16) (LHCP)
          Length = 266

 Score = 90.9 bits (224), Expect = 7e-19
 Identities = 48/88 (54%), Positives = 56/88 (63%), Gaps = 4/88 (4%)
 Frame = +2

Query: 41  MAASALHQTTSFLGTAPRRDDLVRSVGDFGGRITMRRTVKSAPQ----SIWYGPDRAKYL 208
           MAAS    ++ F G A +       V    G++TMR+T   A      S WYGPDR KYL
Sbjct: 1   MAASTTALSSPFAGKAVKLSPSSSEVTG-NGKVTMRKTASKAKPVSSGSPWYGPDRVKYL 59

Query: 209 GPFSEQTPSYLTGEFPGDYGWDTAXLSA 292
           GPFS ++PSYLTGEFPGDYGWDTA LSA
Sbjct: 60  GPFSGESPSYLTGEFPGDYGWDTAGLSA 87

to top

>CB22_TOBAC (P27493) Chlorophyll a-b binding protein 21, chloroplast precursor|
           (LHCII type I CAB-21) (LHCP)
          Length = 265

 Score = 90.9 bits (224), Expect = 7e-19
 Identities = 47/85 (55%), Positives = 56/85 (65%), Gaps = 2/85 (2%)
 Frame = +2

Query: 44  AASALHQTTSFLGTAPRRDDLVRSVGDFGGRITMRRTVKS--APQSIWYGPDRAKYLGPF 217
           AA+    + SF G A +       +    GR++MR+TV    A  S WYGPDR KYLGPF
Sbjct: 3   AATMALSSPSFAGQAVKLSPSAPEITG-NGRVSMRKTVAKPVASSSPWYGPDRVKYLGPF 61

Query: 218 SEQTPSYLTGEFPGDYGWDTAXLSA 292
           S ++PSYLTGEFPGDYGWDTA LSA
Sbjct: 62  SGESPSYLTGEFPGDYGWDTAGLSA 86

to top

>CB25_TOBAC (P27496) Chlorophyll a-b binding protein 50, chloroplast precursor|
           (LHCII type I CAB-50) (LHCP)
          Length = 267

 Score = 90.5 bits (223), Expect = 1e-18
 Identities = 47/87 (54%), Positives = 57/87 (65%), Gaps = 4/87 (4%)
 Frame = +2

Query: 44  AASALHQTTSFLGTAPRRDDLVRSVGDFGGRITMRRTVKSAPQ----SIWYGPDRAKYLG 211
           AA+    ++SF G A +       +    G++TMR+TV  A      S WYGPDR KYLG
Sbjct: 3   AATMALSSSSFAGKAVKLSPSSSEITG-NGKVTMRKTVTKAKPLSSGSPWYGPDRVKYLG 61

Query: 212 PFSEQTPSYLTGEFPGDYGWDTAXLSA 292
           PFS ++PSYLTGEFPGDYGWDTA LSA
Sbjct: 62  PFSGESPSYLTGEFPGDYGWDTAGLSA 88

to top

>CB24_PETSP (P04782) Chlorophyll a-b binding protein 25, chloroplast precursor|
           (LHCII type I CAB-25) (LHCP)
          Length = 266

 Score = 89.7 bits (221), Expect = 2e-18
 Identities = 48/87 (55%), Positives = 56/87 (64%), Gaps = 4/87 (4%)
 Frame = +2

Query: 44  AASALHQTTSFLGTAPRRDDLVRSVGDFGGRITMRRTVKSAPQ----SIWYGPDRAKYLG 211
           AA+    ++SF G A       +  G+  G+ TMR+TV  A      S WYGPDR KYLG
Sbjct: 3   AATMAISSSSFAGKAVNVPSSSQITGN--GKATMRKTVTKAKPVSSGSPWYGPDRVKYLG 60

Query: 212 PFSEQTPSYLTGEFPGDYGWDTAXLSA 292
           PFS + PSYLTGEFPGDYGWDTA LSA
Sbjct: 61  PFSGEAPSYLTGEFPGDYGWDTAGLSA 87

to top

>CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloroplast precursor|
           (LHCII type I CAB-40) (LHCP)
          Length = 267

 Score = 89.0 bits (219), Expect = 3e-18
 Identities = 48/89 (53%), Positives = 58/89 (65%), Gaps = 5/89 (5%)
 Frame = +2

Query: 41  MAASALHQTT-SFLGTAPRRDDLVRSVGDFGGRITMRRTVKSAPQ----SIWYGPDRAKY 205
           MAAS +  ++ SF G A +       +    G++TMR+T   A      S WYGPDR KY
Sbjct: 1   MAASTMALSSPSFAGKAVKLSPSSSEITG-NGKVTMRKTASKAKTVSSGSPWYGPDRVKY 59

Query: 206 LGPFSEQTPSYLTGEFPGDYGWDTAXLSA 292
           LGPFS ++PSYLTGEFPGDYGWDTA LSA
Sbjct: 60  LGPFSGESPSYLTGEFPGDYGWDTAGLSA 88

to top

>CB21_SINAL (P13851) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 266

 Score = 88.6 bits (218), Expect = 4e-18
 Identities = 52/88 (59%), Positives = 61/88 (69%), Gaps = 4/88 (4%)
 Frame = +2

Query: 41  MAASALHQTT-SFLGTAPRRDDLVRSVGDFG-GRITMRRTVK-SAPQ-SIWYGPDRAKYL 208
           MAAS +  ++ +F G A +       V  FG GR+TMR+TVK + P  S WYG DR KYL
Sbjct: 1   MAASTMALSSPAFAGKAVKLSPGASEV--FGTGRVTMRKTVKPTGPSGSPWYGSDRVKYL 58

Query: 209 GPFSEQTPSYLTGEFPGDYGWDTAXLSA 292
           GPFS + PSYLTGEFPGDYGWDTA LSA
Sbjct: 59  GPFSGEPPSYLTGEFPGDYGWDTAGLSA 86

to top

>CB2G_LYCES (P07369) Chlorophyll a-b binding protein 3C, chloroplast precursor|
           (LHCII type I CAB-3C) (LHCP)
          Length = 267

 Score = 88.6 bits (218), Expect = 4e-18
 Identities = 41/58 (70%), Positives = 45/58 (77%), Gaps = 4/58 (6%)
 Frame = +2

Query: 131 GRITMRRTVKSAPQ----SIWYGPDRAKYLGPFSEQTPSYLTGEFPGDYGWDTAXLSA 292
           GR+TMR+T   A      S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTA LSA
Sbjct: 31  GRVTMRKTATKAKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSA 88

to top

>CB23_NICPL (P12469) Chlorophyll a-b binding protein C, chloroplast precursor|
           (LHCII type I CAB-C) (LHCP)
          Length = 267

 Score = 88.2 bits (217), Expect = 5e-18
 Identities = 47/89 (52%), Positives = 58/89 (65%), Gaps = 5/89 (5%)
 Frame = +2

Query: 41  MAASALH-QTTSFLGTAPRRDDLVRSVGDFGGRITMRRTVKSAP----QSIWYGPDRAKY 205
           MAAS +   ++SF G A +       +    G++TMR+T   A      S WYGP+R KY
Sbjct: 1   MAASTMALSSSSFAGKAVKLSPSSSEITG-NGKVTMRKTASKAKPVSSSSPWYGPNRVKY 59

Query: 206 LGPFSEQTPSYLTGEFPGDYGWDTAXLSA 292
           LGPFS ++PSYLTGEFPGDYGWDTA LSA
Sbjct: 60  LGPFSGESPSYLTGEFPGDYGWDTAGLSA 88

to top

>CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (CAB-140) (LHCP)
          Length = 267

 Score = 88.2 bits (217), Expect = 5e-18
 Identities = 49/88 (55%), Positives = 58/88 (65%), Gaps = 4/88 (4%)
 Frame = +2

Query: 41  MAASALHQTT-SFLGTAPRRDDLVRSVGDFGGRITMRRTV---KSAPQSIWYGPDRAKYL 208
           MAAS +  ++ +F G A +       V    GR+TMR+TV   K    S WYG DR KYL
Sbjct: 1   MAASTMALSSPAFAGKAVKLSPAASEVLG-SGRVTMRKTVAKPKGPSGSPWYGSDRVKYL 59

Query: 209 GPFSEQTPSYLTGEFPGDYGWDTAXLSA 292
           GPFS ++PSYLTGEFPGDYGWDTA LSA
Sbjct: 60  GPFSGESPSYLTGEFPGDYGWDTAGLSA 87

to top

>CB23_PETSP (P04781) Chlorophyll a-b binding protein 22R, chloroplast precursor|
           (LHCII type I CAB-22R) (LHCP)
          Length = 267

 Score = 87.8 bits (216), Expect = 6e-18
 Identities = 47/89 (52%), Positives = 57/89 (64%), Gaps = 5/89 (5%)
 Frame = +2

Query: 41  MAASALH-QTTSFLGTAPRRDDLVRSVGDFGGRITMRRTVKSAP----QSIWYGPDRAKY 205
           MAA+ +   ++SF G A +       +    G++TMR+TV  A      S WYGPDR KY
Sbjct: 1   MAATTMALSSSSFAGKAVKLSSSSSEITG-NGKVTMRKTVTKAKPASSSSPWYGPDRVKY 59

Query: 206 LGPFSEQTPSYLTGEFPGDYGWDTAXLSA 292
           LGPFS + PSYLTGEFP DYGWDTA LSA
Sbjct: 60  LGPFSGEAPSYLTGEFPSDYGWDTAGLSA 88

to top

>CB28_PEA (P27490) Chlorophyll a-b binding protein 8, chloroplast precursor|
           (LHCII type I CAB-8)
          Length = 268

 Score = 87.4 bits (215), Expect = 8e-18
 Identities = 47/89 (52%), Positives = 58/89 (65%), Gaps = 5/89 (5%)
 Frame = +2

Query: 41  MAASALHQTTSFLGTAPRRDDLVRSVGDFGG-RITMRRTVKS----APQSIWYGPDRAKY 205
           MAAS++  ++  L   P       S  + GG R TMR++  +    +  S WYGPDR KY
Sbjct: 1   MAASSMALSSPTLTGKPVETSANPSSQELGGARFTMRKSATTKKVASSGSPWYGPDRVKY 60

Query: 206 LGPFSEQTPSYLTGEFPGDYGWDTAXLSA 292
           LGPFS ++PSYLTGEFPGDYGWDTA LSA
Sbjct: 61  LGPFSGESPSYLTGEFPGDYGWDTAGLSA 89

to top

>CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 267

 Score = 87.4 bits (215), Expect = 8e-18
 Identities = 41/59 (69%), Positives = 47/59 (79%), Gaps = 5/59 (8%)
 Frame = +2

Query: 131 GRITMRRTVKSAPQSI-----WYGPDRAKYLGPFSEQTPSYLTGEFPGDYGWDTAXLSA 292
           GRITMR+T    P+++     WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTA LSA
Sbjct: 31  GRITMRKTA-GKPKTVQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSA 88

to top

>CB25_PETSP (P04783) Chlorophyll a-b binding protein 91R, chloroplast precursor|
           (LHCII type I CAB-91R) (LHCP)
          Length = 267

 Score = 87.4 bits (215), Expect = 8e-18
 Identities = 47/87 (54%), Positives = 54/87 (62%), Gaps = 4/87 (4%)
 Frame = +2

Query: 44  AASALHQTTSFLGTAPRRDDLVRSVGDFGGRITMRRTVKSAPQ----SIWYGPDRAKYLG 211
           AA+    + SF G A +       +    G+ TMR+TV  A      S WYGPDR KYLG
Sbjct: 3   AATMALSSPSFAGKAVKFSPSSSEITG-NGKATMRKTVTKAKPVSSGSPWYGPDRVKYLG 61

Query: 212 PFSEQTPSYLTGEFPGDYGWDTAXLSA 292
           PFS + PSYLTGEFPGDYGWDTA LSA
Sbjct: 62  PFSGEAPSYLTGEFPGDYGWDTAELSA 88

to top

>CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180, chloroplast|
           precursor (LHCII type I CAB-165/180)
          Length = 267

 Score = 87.4 bits (215), Expect = 8e-18
 Identities = 41/57 (71%), Positives = 45/57 (78%), Gaps = 3/57 (5%)
 Frame = +2

Query: 131 GRITMRRTV---KSAPQSIWYGPDRAKYLGPFSEQTPSYLTGEFPGDYGWDTAXLSA 292
           GR+TMR+TV   K    S WYG DR KYLGPFS ++PSYLTGEFPGDYGWDTA LSA
Sbjct: 31  GRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSA 87

to top

>CB23_SOYBN (P09756) Chlorophyll a-b binding protein 3, chloroplast precursor|
           (LHCII type I CAB-3) (LHCP)
          Length = 263

 Score = 87.0 bits (214), Expect = 1e-17
 Identities = 40/56 (71%), Positives = 45/56 (80%), Gaps = 2/56 (3%)
 Frame = +2

Query: 131 GRITMRRTVKS--APQSIWYGPDRAKYLGPFSEQTPSYLTGEFPGDYGWDTAXLSA 292
           GR++MR+TV    +  S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTA LSA
Sbjct: 29  GRVSMRKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 84

to top

>CB23_LYCES (P27489) Chlorophyll a-b binding protein 13, chloroplast precursor|
           (LHCII type III CAB-13)
          Length = 265

 Score = 87.0 bits (214), Expect = 1e-17
 Identities = 49/90 (54%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
 Frame = +2

Query: 35  AIMAASALHQT----TSFLGTAPRRDDLVRSVGDFGGRITMRRTVKSAPQSIWYGPDRAK 202
           A MAA+A   T    T FLG     + L   V     R TM          +WYGPDR K
Sbjct: 2   ASMAATASSTTVVKATPFLGQTKNANPLRDVVAMGSARFTMSN-------DLWYGPDRVK 54

Query: 203 YLGPFSEQTPSYLTGEFPGDYGWDTAXLSA 292
           YLGPFS QTPSYL GEFPGDYGWDTA LSA
Sbjct: 55  YLGPFSAQTPSYLNGEFPGDYGWDTAGLSA 84

to top

>CB2_PHYPA (P20866) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 269

 Score = 86.3 bits (212), Expect = 2e-17
 Identities = 48/88 (54%), Positives = 62/88 (70%), Gaps = 5/88 (5%)
 Frame = +2

Query: 44  AASALHQTTSFLGTAPRR--DDLVRSV-GDFGGRITMRRTVKSAPQS--IWYGPDRAKYL 208
           AA+A+H +T+  G +  +  ++L R V G+   R+TMRRTV  +  S  IWYG DR K+L
Sbjct: 3   AATAMH-STALAGQSLVKPVNELSRKVLGNVEARVTMRRTVSKSAGSDTIWYGADRPKFL 61

Query: 209 GPFSEQTPSYLTGEFPGDYGWDTAXLSA 292
           GPFS +TPSYL GEF GDYGWDTA LS+
Sbjct: 62  GPFSGETPSYLNGEFAGDYGWDTAGLSS 89

to top

>CB21_SOYBN (P12471) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP) (Fragment)
          Length = 245

 Score = 85.9 bits (211), Expect = 2e-17
 Identities = 39/56 (69%), Positives = 43/56 (76%), Gaps = 2/56 (3%)
 Frame = +2

Query: 131 GRITMRRTVKSAPQS--IWYGPDRAKYLGPFSEQTPSYLTGEFPGDYGWDTAXLSA 292
           GR++MR+T      S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTA LSA
Sbjct: 11  GRVSMRKTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 66

to top

>CB22_PETSP (P04780) Chlorophyll a-b binding protein 22L, chloroplast precursor|
           (LHCII type I CAB-22L) (LHCP)
          Length = 267

 Score = 85.5 bits (210), Expect = 3e-17
 Identities = 40/58 (68%), Positives = 43/58 (74%), Gaps = 4/58 (6%)
 Frame = +2

Query: 131 GRITMRRTVKSAPQ----SIWYGPDRAKYLGPFSEQTPSYLTGEFPGDYGWDTAXLSA 292
           G+ TMR+T   A      S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTA LSA
Sbjct: 31  GKATMRKTATKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSA 88

to top

>CB22_HORVU (P08963) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 264

 Score = 85.1 bits (209), Expect = 4e-17
 Identities = 46/85 (54%), Positives = 57/85 (67%), Gaps = 2/85 (2%)
 Frame = +2

Query: 44  AASALHQTTSFLGTAPRRDDLVRSV-GDFGGRITMRRTVKSAPQ-SIWYGPDRAKYLGPF 217
           AA+    +++F G A +       V GD   R++MR+T  +    S WYGPDR KYLGPF
Sbjct: 3   AATMALSSSTFAGKAVKNLSSSSEVQGD--ARVSMRKTAATKKVGSPWYGPDRVKYLGPF 60

Query: 218 SEQTPSYLTGEFPGDYGWDTAXLSA 292
           S ++PSYLTGEFPGDYGWDTA LSA
Sbjct: 61  SGESPSYLTGEFPGDYGWDTAGLSA 85

to top

>CB23_HORVU (P27523) Chlorophyll a-b binding protein of LHCII type III,|
           chloroplast precursor (CAB)
          Length = 268

 Score = 84.7 bits (208), Expect = 5e-17
 Identities = 50/90 (55%), Positives = 53/90 (58%), Gaps = 5/90 (5%)
 Frame = +2

Query: 38  IMAAS--ALHQTTSFL---GTAPRRDDLVRSVGDFGGRITMRRTVKSAPQSIWYGPDRAK 202
           IMAA+  A+   T FL   G A     L        GRITM          +WYGPDR K
Sbjct: 5   IMAAASRAVVAKTPFLSGQGRAASASPLRDIAAATNGRITMGN-------DLWYGPDRVK 57

Query: 203 YLGPFSEQTPSYLTGEFPGDYGWDTAXLSA 292
           YLGPFS QTPSYL GEFPGDYGWDTA LSA
Sbjct: 58  YLGPFSAQTPSYLNGEFPGDYGWDTAGLSA 87

to top

>CB27_TOBAC (P27491) Chlorophyll a-b binding protein 7, chloroplast precursor|
           (LHCII type I CAB-7) (LHCP)
          Length = 267

 Score = 84.7 bits (208), Expect = 5e-17
 Identities = 40/58 (68%), Positives = 43/58 (74%), Gaps = 4/58 (6%)
 Frame = +2

Query: 131 GRITMRRTVKSAPQ----SIWYGPDRAKYLGPFSEQTPSYLTGEFPGDYGWDTAXLSA 292
           G+  MR+TV  A      S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTA LSA
Sbjct: 31  GKAIMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSA 88

to top

>CB23_POLMU (P15195) Chlorophyll a-b binding protein type 1 member F3,|
           chloroplast precursor (DE Chlorophyll a-b binding
           protein type I F3) (CAB-F3) (LHCP)
          Length = 265

 Score = 84.0 bits (206), Expect = 9e-17
 Identities = 46/86 (53%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
 Frame = +2

Query: 41  MAASALHQTTSFLGTAPRR-DDLVRSVGDFGGRITMRRTVKSAPQ-SIWYGPDRAKYLGP 214
           MA S    T++F G   +  ++L R VG    R+ M      AP  SIWYG DR  YLGP
Sbjct: 1   MATSTAALTSTFSGQQLKPVNELSRKVGAGEARVQMMAPKSKAPSGSIWYGSDRPLYLGP 60

Query: 215 FSEQTPSYLTGEFPGDYGWDTAXLSA 292
           FS   PSYL+GEFPGDYGWDTA LSA
Sbjct: 61  FSGSPPSYLSGEFPGDYGWDTAGLSA 86

to top

>CB2A_PYRPY (P24006) Chlorophyll a-b binding protein 1A, chloroplast precursor|
           (LHCII type II CAB-1A) (LHCP)
          Length = 278

 Score = 83.6 bits (205), Expect = 1e-16
 Identities = 48/95 (50%), Positives = 57/95 (60%), Gaps = 11/95 (11%)
 Frame = +2

Query: 41  MAASALHQTTSFLGTA-----PRRDDLVRSVGDFG-GRITMRRTV--KSAPQSI---WYG 187
           MA+  +    +F G       P+ + L+   G  G  R+TMR+    KS   SI   WYG
Sbjct: 5   MASCGIGSRCAFAGAQLSSVKPQNNQLLGVGGAHGEARLTMRKATGRKSVAASIDSPWYG 64

Query: 188 PDRAKYLGPFSEQTPSYLTGEFPGDYGWDTAXLSA 292
           PDR  YLGPFS + PSYLTGEFPGDYGWDTA LSA
Sbjct: 65  PDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 99

to top

>CB2A_PINSY (P15193) Chlorophyll a-b binding protein type 2 member 1A,|
           chloroplast precursor (Chlorophyll a-b binding protein
           type II 1A) (CAB) (LHCP)
          Length = 278

 Score = 83.2 bits (204), Expect = 2e-16
 Identities = 48/95 (50%), Positives = 57/95 (60%), Gaps = 11/95 (11%)
 Frame = +2

Query: 41  MAASALHQTTSFLGTA-----PRRDDLVRSVGDFG-GRITMRRTV--KSAPQSI---WYG 187
           MA+  +    +F G       P+ + L+   G  G  R+TMR+    KS   SI   WYG
Sbjct: 5   MASCGIGSRCAFAGAQLSSVKPQNNQLLGVGGAHGEARLTMRKATGKKSVAASIDSPWYG 64

Query: 188 PDRAKYLGPFSEQTPSYLTGEFPGDYGWDTAXLSA 292
           PDR  YLGPFS + PSYLTGEFPGDYGWDTA LSA
Sbjct: 65  PDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 99

to top

>CB21_CUCSA (P08221) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP) (Fragment)
          Length = 255

 Score = 83.2 bits (204), Expect = 2e-16
 Identities = 38/55 (69%), Positives = 42/55 (76%), Gaps = 2/55 (3%)
 Frame = +2

Query: 134 RITMRRTVKSAPQS--IWYGPDRAKYLGPFSEQTPSYLTGEFPGDYGWDTAXLSA 292
           + TMR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTA LSA
Sbjct: 22  KFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 76

to top

>CB21_WHEAT (P04784) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 266

 Score = 82.8 bits (203), Expect = 2e-16
 Identities = 46/89 (51%), Positives = 55/89 (61%), Gaps = 5/89 (5%)
 Frame = +2

Query: 41  MAASALH-QTTSFLGTAPRRDDLVRSVGDFGGRITMRRTVKSAPQ----SIWYGPDRAKY 205
           MAA+ +   ++SF G A +       +GD   R+ MR+T   A Q    S WYG DR  Y
Sbjct: 1   MAATTMSLSSSSFAGKAVKNLPSSALIGD--ARVNMRKTAAKAKQVSSSSPWYGSDRVLY 58

Query: 206 LGPFSEQTPSYLTGEFPGDYGWDTAXLSA 292
           LGP S + PSYLTGEFPGDYGWDTA LSA
Sbjct: 59  LGPLSGEPPSYLTGEFPGDYGWDTAGLSA 87

to top

>CB22_PEA (P07371) Chlorophyll a-b binding protein AB80, chloroplast|
           precursor (LHCII type I CAB-AB80) (LHCP)
          Length = 269

 Score = 82.4 bits (202), Expect = 3e-16
 Identities = 38/57 (66%), Positives = 44/57 (77%), Gaps = 4/57 (7%)
 Frame = +2

Query: 134 RITMRRTVKS----APQSIWYGPDRAKYLGPFSEQTPSYLTGEFPGDYGWDTAXLSA 292
           R TMR++  +    +  S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTA LSA
Sbjct: 34  RFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSA 90

to top

>CB2B_PINSY (P15194) Chlorophyll a-b binding protein type 2 member 1B,|
           chloroplast precursor (Chlorophyll a-b binding protein
           type II 1B) (CAB) (LHCP)
          Length = 274

 Score = 82.0 bits (201), Expect = 3e-16
 Identities = 39/58 (67%), Positives = 42/58 (72%), Gaps = 5/58 (8%)
 Frame = +2

Query: 134 RITMRRTVK-----SAPQSIWYGPDRAKYLGPFSEQTPSYLTGEFPGDYGWDTAXLSA 292
           R+TMR+        SA  S WYGPDR  YLGPFS + PSYLTGEFPGDYGWDTA LSA
Sbjct: 38  RVTMRKATTKKLTASASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSA 95

to top

>CB22_MAIZE (P06671) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 265

 Score = 80.9 bits (198), Expect = 8e-16
 Identities = 47/90 (52%), Positives = 54/90 (60%), Gaps = 6/90 (6%)
 Frame = +2

Query: 41  MAASALH-QTTSFLGTAPRRDDLVRSVGDFGGRITMRRTVKSAPQ-----SIWYGPDRAK 202
           MA+S +   +T+F G A      V S      R+TMR+T   A       S WYGPDR  
Sbjct: 1   MASSTMALSSTAFAGKAVN----VPSSSFGEARVTMRKTAAKAKPAAASGSPWYGPDRVL 56

Query: 203 YLGPFSEQTPSYLTGEFPGDYGWDTAXLSA 292
           YLGP S + PSYLTGEFPGDYGWDTA LSA
Sbjct: 57  YLGPLSGEPPSYLTGEFPGDYGWDTAGLSA 86

to top

>CB29_MAIZE (P27497) Chlorophyll a-b binding protein M9, chloroplast precursor|
           (LHCII type I CAB-M9) (LHCP)
          Length = 265

 Score = 80.1 bits (196), Expect = 1e-15
 Identities = 38/58 (65%), Positives = 41/58 (70%), Gaps = 5/58 (8%)
 Frame = +2

Query: 134 RITMRRTVKSAPQ-----SIWYGPDRAKYLGPFSEQTPSYLTGEFPGDYGWDTAXLSA 292
           R+TMR+T   A       S WYGPDR  YLGP S + PSYLTGEFPGDYGWDTA LSA
Sbjct: 29  RVTMRKTAAKAKPAASSGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSA 86

to top

>CB2_CHLMO (P22686) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP)
          Length = 256

 Score = 79.3 bits (194), Expect = 2e-15
 Identities = 33/38 (86%), Positives = 35/38 (92%)
 Frame = +2

Query: 179 WYGPDRAKYLGPFSEQTPSYLTGEFPGDYGWDTAXLSA 292
           WYGPDRAK+LGPFS  TP+YLTGEFPGDYGWDTA LSA
Sbjct: 39  WYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSA 76

to top

>CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 261

 Score = 78.6 bits (192), Expect = 4e-15
 Identities = 38/58 (65%), Positives = 42/58 (72%), Gaps = 4/58 (6%)
 Frame = +2

Query: 131 GRITMRRTVK----SAPQSIWYGPDRAKYLGPFSEQTPSYLTGEFPGDYGWDTAXLSA 292
           GRITMR++      +A  S WYG DR  YLGP S + PSYLTGEFPGDYGWDTA LSA
Sbjct: 25  GRITMRKSAAKPKPAASGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSA 82

to top

>CB48_MAIZE (Q00827) Chlorophyll a-b binding protein 48, chloroplast precursor|
           (LHCII type I CAB-48) (LHCP)
          Length = 264

 Score = 76.3 bits (186), Expect = 2e-14
 Identities = 39/58 (67%), Positives = 40/58 (68%), Gaps = 4/58 (6%)
 Frame = +2

Query: 131 GRITMRRTV-KSAPQ---SIWYGPDRAKYLGPFSEQTPSYLTGEFPGDYGWDTAXLSA 292
           GRITMR+T  K  P    S WYG DR  YLGP S   PSYLTGEFPGDYGWDT  LSA
Sbjct: 28  GRITMRKTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSA 85

to top

>CB21_ORYSA (P12330) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 265

 Score = 76.3 bits (186), Expect = 2e-14
 Identities = 37/58 (63%), Positives = 41/58 (70%), Gaps = 5/58 (8%)
 Frame = +2

Query: 134 RITMRRTVK-----SAPQSIWYGPDRAKYLGPFSEQTPSYLTGEFPGDYGWDTAXLSA 292
           RITMR+T       ++  S WYG DR  YLGP S + PSYLTGEFPGDYGWDTA LSA
Sbjct: 29  RITMRKTAAKPKPAASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSA 86

to top

>CB21_PEA (P04159) Chlorophyll a-b binding protein AB96 (LHCII type I|
           CAB-AB96) (LHCP) (Major 15) (Fragment)
          Length = 228

 Score = 75.9 bits (185), Expect = 2e-14
 Identities = 32/44 (72%), Positives = 37/44 (84%)
 Frame = +2

Query: 161 SAPQSIWYGPDRAKYLGPFSEQTPSYLTGEFPGDYGWDTAXLSA 292
           ++  S W+GPD  KYLGPFS ++PSYLTGEFPGDYGWDTA LSA
Sbjct: 6   ASSSSPWHGPDGVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSA 49

to top

>CB2_DUNTE (P27517) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP)
          Length = 253

 Score = 74.3 bits (181), Expect = 7e-14
 Identities = 36/56 (64%), Positives = 44/56 (78%), Gaps = 3/56 (5%)
 Frame = +2

Query: 134 RITMRRTVKSAPQSI--WYGPDRAKYLGPFSEQ-TPSYLTGEFPGDYGWDTAXLSA 292
           R T ++ + + P++   +YGPDRAK+LGPFSE  TP YLTGEFPGDYGWDTA LSA
Sbjct: 16  RQTRQQRMATVPRAAVEFYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSA 71

to top

>CB2_CHLRE (P14273) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP)
          Length = 253

 Score = 70.5 bits (171), Expect = 1e-12
 Identities = 34/48 (70%), Positives = 41/48 (85%), Gaps = 4/48 (8%)
 Frame = +2

Query: 161 SAPQSI---WYGPDRAKYLGPFSEQ-TPSYLTGEFPGDYGWDTAXLSA 292
           +AP+S    +YGP+RAK+LGP+SE  TP+YLTGEFPGDYGWDTA LSA
Sbjct: 27  AAPKSSGVEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSA 74

to top

>CB2_MALDO (P15773) Chlorophyll a-b binding protein AB10, chloroplast|
           precursor (LHCII type I CAB-AB10) (LHCP)
          Length = 268

 Score = 64.7 bits (156), Expect = 6e-11
 Identities = 36/87 (41%), Positives = 45/87 (51%)
 Frame = +2

Query: 32  PAIMAASALHQTTSFLGTAPRRDDLVRSVGDFGGRITMRRTVKSAPQSIWYGPDRAKYLG 211
           P +  +  LH    +    P + + + S        TM +    +  S      R KYLG
Sbjct: 4   PRLSVSICLHPLLIYKIAKPSKLNPISSTLIVTAGFTMLKHAAKSKVSSSTCDRRVKYLG 63

Query: 212 PFSEQTPSYLTGEFPGDYGWDTAXLSA 292
           PFS + PSYLTGEFPGDYGWDTA LSA
Sbjct: 64  PFSGEWPSYLTGEFPGDYGWDTAGLSA 90

to top

>CB22_SOYBN (P09755) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 256

 Score = 64.3 bits (155), Expect = 8e-11
 Identities = 39/79 (49%), Positives = 51/79 (64%), Gaps = 6/79 (7%)
 Frame = +2

Query: 41  MAASALHQTTSFLGTAPRRDDLVRSVGDFG-GRITMRRTVKSAPQSI-----WYGPDRAK 202
           MAAS +  ++S L  A +   L  S  + G GR++MR+T   AP+++     WYGPDR K
Sbjct: 1   MAASTMALSSSSL--AGQAMKLAPSTPELGVGRVSMRKT---APKTVSSGSPWYGPDRVK 55

Query: 203 YLGPFSEQTPSYLTGEFPG 259
           YLGPFS + PSYLTGEF G
Sbjct: 56  YLGPFSGEAPSYLTGEFHG 74

to top

>CB22_CUCSA (P08222) Chlorophyll a-b binding protein of LHCII type 1|
           (Chlorophyll a-b binding protein of LHCII type I) (CAB)
           (LHCP) (Fragment)
          Length = 206

 Score = 54.3 bits (129), Expect = 8e-08
 Identities = 23/27 (85%), Positives = 24/27 (88%)
 Frame = +2

Query: 212 PFSEQTPSYLTGEFPGDYGWDTAXLSA 292
           PFS + PSYLTGEFPGDYGWDTA LSA
Sbjct: 1   PFSGEPPSYLTGEFPGDYGWDTAGLSA 27

to top

>CB2_DUNSA (P20865) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP)
          Length = 273

 Score = 45.4 bits (106), Expect = 4e-05
 Identities = 24/44 (54%), Positives = 27/44 (61%)
 Frame = +2

Query: 161 SAPQSIWYGPDRAKYLGPFSEQTPSYLTGEFPGDYGWDTAXLSA 292
           S+  + +YGPD A        Q P   TGEFPGDYGWDTA LSA
Sbjct: 51  SSSANQFYGPD-ATSGWDLQHQHPRLPTGEFPGDYGWDTAGLSA 93

to top

>CB26_ARATH (Q9XF89) Chlorophyll a-b binding protein CP26, chloroplast|
           precursor (Light-harvesting complex II protein 5)
           (LHCB5) (LHCIIc)
          Length = 280

 Score = 37.4 bits (85), Expect = 0.010
 Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +2

Query: 179 WYGPDRAKYLGPF---SEQTPSYLTGEFPGDYGWD 274
           WYGPDR  +L        + P YL GE  GDYG+D
Sbjct: 62  WYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYD 96

to top

>GNTP_ECOLI (P0AC94) High-affinity gluconate transporter (Gluconate permease 3)|
           (Gnt-III system)
          Length = 447

 Score = 31.2 bits (69), Expect = 0.70
 Identities = 23/77 (29%), Positives = 33/77 (42%)
 Frame = +2

Query: 32  PAIMAASALHQTTSFLGTAPRRDDLVRSVGDFGGRITMRRTVKSAPQSIWYGPDRAKYLG 211
           PA+ AA+  H   S     P    LV + G   G + +   + + P  I  G    K+LG
Sbjct: 145 PAVAAATTAH---SLFPPQPGPVALVNAYGADMGMVYIYGVLVTIPSVICAGLILPKFLG 201

Query: 212 PFSEQTPSYLTGEFPGD 262
                TPS+L  + P D
Sbjct: 202 NLERPTPSFLKADQPVD 218

to top

>GNTP_ECO57 (P0AC95) High-affinity gluconate transporter (Gluconate permease 3)|
           (Gnt-III system)
          Length = 447

 Score = 31.2 bits (69), Expect = 0.70
 Identities = 23/77 (29%), Positives = 33/77 (42%)
 Frame = +2

Query: 32  PAIMAASALHQTTSFLGTAPRRDDLVRSVGDFGGRITMRRTVKSAPQSIWYGPDRAKYLG 211
           PA+ AA+  H   S     P    LV + G   G + +   + + P  I  G    K+LG
Sbjct: 145 PAVAAATTAH---SLFPPQPGPVALVNAYGADMGMVYIYGVLVTIPSVICAGLILPKFLG 201

Query: 212 PFSEQTPSYLTGEFPGD 262
                TPS+L  + P D
Sbjct: 202 NLERPTPSFLKADQPVD 218

to top

>KPRB_RAT (O08618) Phosphoribosyl pyrophosphate synthetase-associated protein|
           2 (PRPP synthetase-associated protein 2) (41 kDa
           phosphoribosypyrophosphate synthetase-associated
           protein) (PAP41)
          Length = 369

 Score = 30.8 bits (68), Expect = 0.92
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 17  GQPQPPAIMAASALHQTTSFLGTAPRRDDLVRSVGDFGGRITM 145
           G+  PP + + +A+H +       P+    +  VGD GGRI +
Sbjct: 224 GRHSPPMVRSVAAIHPSLEIPMLIPKEKPPITVVGDVGGRIAI 266

to top

>KPRB_MOUSE (Q8R574) Phosphoribosyl pyrophosphate synthetase-associated protein|
           2 (PRPP synthetase-associated protein 2) (41 kDa
           phosphoribosypyrophosphate synthetase-associated
           protein) (PAP41)
          Length = 369

 Score = 30.8 bits (68), Expect = 0.92
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 17  GQPQPPAIMAASALHQTTSFLGTAPRRDDLVRSVGDFGGRITM 145
           G+  PP + + +A+H +       P+    +  VGD GGRI +
Sbjct: 224 GRHSPPMVRSVAAIHPSLEIPMLIPKEKPPITVVGDVGGRIAI 266

to top

>KPRB_HUMAN (O60256) Phosphoribosyl pyrophosphate synthetase-associated protein|
           2 (PRPP synthetase-associated protein 2) (41 kDa
           phosphoribosypyrophosphate synthetase-associated
           protein) (PAP41)
          Length = 369

 Score = 30.8 bits (68), Expect = 0.92
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 17  GQPQPPAIMAASALHQTTSFLGTAPRRDDLVRSVGDFGGRITM 145
           G+  PP + + +A+H +       P+    +  VGD GGRI +
Sbjct: 224 GRHSPPMVRSVAAIHPSLEIPMLIPKEKPPITVVGDVGGRIAI 266

to top

>DACT2_BRARE (Q673G8) Dapper homolog 2 (Frodo 2)|
          Length = 837

 Score = 30.8 bits (68), Expect = 0.92
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 129 PKSPTLRTRSSRRGAVPRKLVVWCSADAAIIAGGWGCP 16
           P  PTL T+ S+     RK+ +  S  A   +G WGCP
Sbjct: 640 PLPPTLHTQRSKEMLNSRKVAMVRSVSARPRSGHWGCP 677

to top

>CB13_LYCES (P27522) Chlorophyll a-b binding protein 8, chloroplast precursor|
           (LHCI type III CAB-8)
          Length = 273

 Score = 30.8 bits (68), Expect = 0.92
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 218 SEQTPSYLTGEFPGDYGWDTAXLS 289
           S+Q+ SYL G  PGD+G+D   LS
Sbjct: 59  SKQSLSYLDGRLPGDFGFDPLGLS 82

to top

>LH15_EUGGR (P08975) Light-harvesting complex I LH35 proteins precursor|
           [Contains: LH35 protein 1; LH35 protein 2] (Fragment)
          Length = 331

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 224 QTPSYLTGEFPGDYGWDTAXLSA 292
           Q P++LTGE+P D G+D   ++A
Sbjct: 167 QPPAHLTGEYPADRGFDPLSVAA 189

to top

>ENP1_RAT (P97687) Ectonucleoside triphosphate diphosphohydrolase 1 (EC|
           3.6.1.5) (NTPDase1) (Ecto-ATP diphosphohydrolase)
           (ATPDase) (Lymphoid cell activation antigen)
           (Ecto-apyrase) (CD39 antigen)
          Length = 511

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 21/77 (27%), Positives = 28/77 (36%)
 Frame = +2

Query: 47  ASALHQTTSFLGTAPRRDDLVRSVGDFGGRITMRRTVKSAPQSIWYGPDRAKYLGPFSEQ 226
           AS  HQT  +LG                G   +R   K +   +     R+    PF  Q
Sbjct: 118 ASKQHQTPVYLGAT-------------AGMRLLRMESKQSADEVLAAVSRSLKSYPFDFQ 164

Query: 227 TPSYLTGEFPGDYGWDT 277
               +TG+  G YGW T
Sbjct: 165 GAKIITGQEEGAYGWIT 181

to top

>DHE4_SACBA (Q8TFF6) NADP-specific glutamate dehydrogenase 1 (EC 1.4.1.4)|
           (NADP-GDH 1) (NADP-dependent glutamate dehydrogenase 1)
          Length = 454

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 140 TMRRTVKSAPQSIWYGPDRAKYLG 211
           T R T  +  +S+WYGP +A  LG
Sbjct: 353 TARATASTLKESVWYGPPKAANLG 376

to top

>CB11_LYCES (P12360) Chlorophyll a-b binding protein 6A, chloroplast precursor|
           (LHCI type I CAB-6A) (Light-harvesting complex I 26 kDa
           protein)
          Length = 246

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 230 PSYLTGEFPGDYGWDTAXL 286
           PSYL G  PGD+G+D+  L
Sbjct: 56  PSYLDGSAPGDFGFDSLGL 74

to top

>LH18_EUGGR (P08976) Light-harvesting complex I LH38 proteins precursor|
           [Contains: LH38 protein 1; LH38 protein 2; LH38 protein
           3] (Fragment)
          Length = 530

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +2

Query: 230 PSYLTGEFPGDYGWDTAXLSA 292
           P YLTGE  GD G+D A L+A
Sbjct: 381 PRYLTGEAYGDKGFDPAGLAA 401



 Score = 28.5 bits (62), Expect = 4.6
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +2

Query: 230 PSYLTGEFPGDYGWDTAXLSA 292
           PS+L GE+ GD G+D A L+A
Sbjct: 12  PSWLNGEYYGDRGFDPAGLAA 32



 Score = 28.1 bits (61), Expect = 6.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 224 QTPSYLTGEFPGDYGWDTAXLSA 292
           + P+ LTGE+P D G+D   L+A
Sbjct: 195 EPPALLTGEYPADRGFDPLNLAA 217

to top

>VP40_EBV (P03234) Capsid protein P40 (Virion structural protein BVRF2)|
           (EC-RF3 and EC-RF3A) [Contains: Capsid protein VP24
           (Assemblin) (Protease) (EC 3.4.21.97); Capsid protein
           VP22A; C-terminal peptide]
          Length = 605

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 16/39 (41%), Positives = 17/39 (43%)
 Frame = -1

Query: 231 GVCSENGPRYLARSGPYQMLWGALLTVRRMVMRPPKSPT 115
           G C + GP Y   SGPY         V R V  PP  PT
Sbjct: 470 GYCPQQGPCY-THSGPYGFQPHQSYEVPRYVPHPPPPPT 507

to top

>TEGU_EBV (P03186) Large tegument protein|
          Length = 3149

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 29   PPAIMAASALHQTTSFLGTAPRRDDLVRSVGDF 127
            PP + + SAL      L T   RDDL+++ GDF
Sbjct: 1667 PPRLASDSALWPKKPQLLTRRERDDLLQATGDF 1699

to top

>RNC_SYMTH (Q67PF5) Ribonuclease III (EC 3.1.26.3) (RNase III)|
          Length = 235

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 19/60 (31%), Positives = 23/60 (38%)
 Frame = -3

Query: 223 LGERAQVLGTVRXVPDALGRALDGPAHGXXXXXXXXXXXXVIAPRGGAEEAGRLVQRRRG 44
           L ERA+VLG  R +    G A+ G                 +   GG E A R V R  G
Sbjct: 91  LAERARVLGIGRHMRFGRGEAVSGRDRDSTLSDAFEAVVGALYLDGGLEAAQRFVLRELG 150


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,320,851
Number of Sequences: 219361
Number of extensions: 520981
Number of successful extensions: 1951
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 1924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1943
length of database: 80,573,946
effective HSP length: 73
effective length of database: 64,560,593
effective search space used: 1549454232
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result