ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal30i10 |
|---|---|
| Clone Library Name | barley_pub |
>DNAK_FRATU (P48205) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 642 Score = 32.7 bits (73), Expect = 0.74 Identities = 18/56 (32%), Positives = 28/56 (50%) Frame = +1 Query: 169 FQDKESQATAREREEAAVFGSDNGKAAANAPNGSDMAPPKDAADEWPEPKQTYTFY 336 + DK Q +++ AV +DNG A G MAPP+ +A+ + K+T Y Sbjct: 77 YDDKAVQEDIKKKVPYAVIKADNGDAWVATKEGKKMAPPQVSAEVLRKMKKTAEDY 132
>DNAK_FRATT (Q5NFG7) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 642 Score = 32.7 bits (73), Expect = 0.74 Identities = 18/56 (32%), Positives = 28/56 (50%) Frame = +1 Query: 169 FQDKESQATAREREEAAVFGSDNGKAAANAPNGSDMAPPKDAADEWPEPKQTYTFY 336 + DK Q +++ AV +DNG A G MAPP+ +A+ + K+T Y Sbjct: 77 YDDKAVQEDIKKKVPYAVIKADNGDAWVATKEGKKMAPPQVSAEVLRKMKKTAEDY 132
>FOXD2_HUMAN (O60548) Forkhead box protein D2 (Forkhead-related protein FKHL17)| (Forkhead-related transcription factor 9) (FREAC-9) Length = 497 Score = 32.3 bits (72), Expect = 0.97 Identities = 28/93 (30%), Positives = 37/93 (39%), Gaps = 2/93 (2%) Frame = +1 Query: 118 AEAAPAQVKVADEEVALFQDKESQATAREREEAAVFGSDNGKAAANAPNGSDMAPPK-DA 294 AE A A + +EE D E +A A AA G AAA G PP A Sbjct: 60 AEEAEADLAEDEEESGGCSDGEPRALASRGAAAAAGSPGPGAAAARGAAGPGPGPPSGGA 119 Query: 295 ADEWPEPKQTYTFY-FVKVRSFEDPKLRAKLEQ 390 A P K Y++ + + + PK R L + Sbjct: 120 ATRSPLVKPPYSYIALITMAILQSPKKRLTLSE 152
>PRP40_HUMAN (O75400) Pre-mRNA-processing factor 40 homolog A (Formin-binding| protein 3) (Huntingtin yeast partner A) (Huntingtin-interacting protein HYPA/FBP11) (Fas ligand-associated factor 1) (NY-REN-6 antigen) Length = 957 Score = 30.4 bits (67), Expect = 3.7 Identities = 23/86 (26%), Positives = 41/86 (47%) Frame = +1 Query: 163 ALFQDKESQATAREREEAAVFGSDNGKAAANAPNGSDMAPPKDAADEWPEPKQTYTFYFV 342 +L + E++ RE+EEA K +A APP + W + ++ FV Sbjct: 723 SLLEKAEAREREREKEEARKM---KRKESAFKSMLKQAAPPIELDAVWEDIRER----FV 775 Query: 343 KVRSFEDPKLRAKLEQAEKDFQNKIQ 420 K +FED L ++ ++ KDF + ++ Sbjct: 776 KEPAFEDITLESERKRIFKDFMHVLE 801
>IGA2_HAEIN (P45384) Immunoglobulin A1 protease precursor (EC 3.4.21.72) (IGA1| protease) Length = 1702 Score = 30.4 bits (67), Expect = 3.7 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 1/92 (1%) Frame = +1 Query: 127 APAQVKVADEEVALFQDKESQATAREREEAAVFGSDNGKAAANA-PNGSDMAPPKDAADE 303 APA E VA +ES+ + ++A + NG+ A A P+ + A Sbjct: 1034 APATPSETTETVAENSKQESKTVEKNEQDATETTAQNGEVAEEAKPSVKANTQTNEVAQS 1093 Query: 304 WPEPKQTYTFYFVKVRSFEDPKLRAKLEQAEK 399 E ++T T + E + +AK+E+ EK Sbjct: 1094 GSETEETQTTEIKETAKVEKEE-KAKVEKEEK 1124
>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70| kDa) (snRNP70) Length = 448 Score = 30.4 bits (67), Expect = 3.7 Identities = 15/47 (31%), Positives = 21/47 (44%) Frame = +1 Query: 172 QDKESQATAREREEAAVFGSDNGKAAANAPNGSDMAPPKDAADEWPE 312 + +E RER+E G G + G DMA P +A D P+ Sbjct: 294 RSRERARRERERKEELRGGGGGGGGGSGGGGGGDMAEPSEAGDGAPD 340
>LONM_YEAST (P36775) Lon protease homolog, mitochondrial precursor (EC| 3.4.21.-) Length = 1133 Score = 30.4 bits (67), Expect = 3.7 Identities = 14/54 (25%), Positives = 28/54 (51%) Frame = +1 Query: 151 DEEVALFQDKESQATAREREEAAVFGSDNGKAAANAPNGSDMAPPKDAADEWPE 312 D+E+ + +D+E +A+ R A+ G + + + S PPKD + +P+ Sbjct: 129 DDEI-VNKDQEGEASKNSRSSASGGGQSSSSRSDSGDGSSKQKPPKDVPEVYPQ 181
>IF2_STRPN (Q97S57) Translation initiation factor IF-2| Length = 958 Score = 30.4 bits (67), Expect = 3.7 Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 1/99 (1%) Frame = +1 Query: 121 EAAPAQVKVADEEVALFQDKESQATAREREE-AAVFGSDNGKAAANAPNGSDMAPPKDAA 297 EA PA KV+ E+ A + A A+E + AA S KA + P +A + Sbjct: 59 EAKPAAPKVSAEKKAEKSEPAKPAVAKEEAKPAAPKASAEKKAEKSEPVKPAVAKEEAKP 118 Query: 298 DEWPEPKQTYTFYFVKVRSFEDPKLRAKLEQAEKDFQNK 414 E PK + R+F+ + EQAE+ QNK Sbjct: 119 AEPVTPKTEKVAAKPQSRNFKAEREARAKEQAERRKQNK 157
>BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-associated| transcript 2) Length = 2158 Score = 30.0 bits (66), Expect = 4.8 Identities = 18/63 (28%), Positives = 30/63 (47%) Frame = +1 Query: 136 QVKVADEEVALFQDKESQATAREREEAAVFGSDNGKAAANAPNGSDMAPPKDAADEWPEP 315 ++K +DEE D+E ++ + AA + +P GS++ PPK A E P Sbjct: 338 KLKFSDEEDGRDSDEEGAEGHKDSQSAAAEEPETDGKKGTSP-GSELPPPKTAWTENARP 396 Query: 316 KQT 324 +T Sbjct: 397 SET 399
>VGLX_PRVRI (P07562) Secreted glycoprotein GX| Length = 498 Score = 29.6 bits (65), Expect = 6.3 Identities = 17/53 (32%), Positives = 28/53 (52%) Frame = +1 Query: 103 MEVVGAEAAPAQVKVADEEVALFQDKESQATAREREEAAVFGSDNGKAAANAP 261 +EVVG+ AAPA+ +E +D+E ++ + E V GS A++ P Sbjct: 286 IEVVGSPAAPAEGPATEEGRGAEEDEELTSSDLDNIEIEVVGSPRPPASSPPP 338
>SP6D_BACSU (P37963) Stage VI sporulation protein D| Length = 575 Score = 29.6 bits (65), Expect = 6.3 Identities = 28/99 (28%), Positives = 38/99 (38%) Frame = +1 Query: 106 EVVGAEAAPAQVKVADEEVALFQDKESQATAREREEAAVFGSDNGKAAANAPNGSDMAPP 285 E VGAE +PA E + ++KE + E A + N +AA SD A P Sbjct: 298 EHVGAEESPALEAELHSETVIAKEKEETTVSPNHEYALRQEAQNEEAAQ-----SDQADP 352 Query: 286 KDAADEWPEPKQTYTFYFVKVRSFEDPKLRAKLEQAEKD 402 +E EP + S ED + A E D Sbjct: 353 ALCQEE-AEPDEALESVSEAALSIEDSRETASAVYMEND 390
>CFDP2_BOVIN (O02751) Craniofacial development protein 2 (p97 bucentaur protein)| Length = 592 Score = 29.6 bits (65), Expect = 6.3 Identities = 21/75 (28%), Positives = 36/75 (48%) Frame = +1 Query: 145 VADEEVALFQDKESQATAREREEAAVFGSDNGKAAANAPNGSDMAPPKDAADEWPEPKQT 324 + E+ A Q+K +++ +EEA V S + ++A S++ PP E ++T Sbjct: 86 IEKEDAAAEQEKGAESEDARQEEADVLAS----SVSDAEPKSEL-PPSTQTKTGEETEET 140 Query: 325 YTFYFVKVRSFEDPK 369 + VKV E PK Sbjct: 141 SSSNLVKVEELEKPK 155
>KCNK1_MOUSE (O08581) Potassium channel subfamily K member 1 (Inward rectifying| potassium channel protein TWIK-1) Length = 336 Score = 29.6 bits (65), Expect = 6.3 Identities = 17/46 (36%), Positives = 23/46 (50%) Frame = -1 Query: 219 SCFLTLPCSRLTFLVLEKGHFLISYFNLCWCSFSSDDLHSHVPVEG 82 SCF +P + F VLE + F C+ S S+ L +VP EG Sbjct: 193 SCFFFIPAA--VFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEG 236
>KCNK1_HUMAN (O00180) Potassium channel subfamily K member 1 (Inward rectifying| potassium channel protein TWIK-1) (Potassium channel KCNO1) Length = 336 Score = 29.6 bits (65), Expect = 6.3 Identities = 17/46 (36%), Positives = 23/46 (50%) Frame = -1 Query: 219 SCFLTLPCSRLTFLVLEKGHFLISYFNLCWCSFSSDDLHSHVPVEG 82 SCF +P + F VLE + F C+ S S+ L +VP EG Sbjct: 193 SCFFFIPAA--VFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEG 236
>FAF1_HUMAN (Q9UNN5) FAS-associated factor 1 (Protein FAF1) (hFAF1)| Length = 650 Score = 29.6 bits (65), Expect = 6.3 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%) Frame = +1 Query: 112 VGAEAAPAQVKVADEEVALFQDKESQATAREREEAAVFGSDNGKAAANAPNGSDMAP--P 285 VG ++PAQ + EE S + + E+A FG D+G+ A + +P P Sbjct: 265 VGRRSSPAQTREQSEEQITDVHMVSDSDGDDFEDATEFGVDDGEVFGMASSALRKSPMMP 324 Query: 286 KDAADE 303 ++A +E Sbjct: 325 ENAENE 330
>TAF1_DROME (P51123) Transcription initiation factor TFIID subunit 1 (EC| 2.7.11.1) (Transcription initiation factor TFIID 230 kDa subunit) (TAFII-230) (TAFII250) (TBP-associated factor 230 kDa) (p230) Length = 2129 Score = 29.6 bits (65), Expect = 6.3 Identities = 12/36 (33%), Positives = 17/36 (47%) Frame = -1 Query: 123 FSSDDLHSHVPVEGRAGSDRGRAPIWRRGSGQIWLD 16 F+S+D+ P G + + WR G QIW D Sbjct: 325 FNSEDVRPEGPDNGENSDQKPKVADWRFGPAQIWYD 360
>IF2_RALEJ (Q46ZP1) Translation initiation factor IF-2| Length = 966 Score = 29.3 bits (64), Expect = 8.2 Identities = 24/75 (32%), Positives = 35/75 (46%) Frame = +1 Query: 112 VGAEAAPAQVKVADEEVALFQDKESQATAREREEAAVFGSDNGKAAANAPNGSDMAPPKD 291 V E A AQ D + A + + Q AR+R EAA + + NAP AP + Sbjct: 210 VAVERAAAQKAADDAKAAADKARAEQDAARKRREAAEAEARAIQQMLNAPARVLKAPSER 269 Query: 292 AADEWPEPKQTYTFY 336 A+E + +QT T + Sbjct: 270 KAEE-KKAEQTGTLH 283
>BMPR2_MOUSE (O35607) Bone morphogenetic protein receptor type-2 precursor (EC| 2.7.11.30) (Bone morphogenetic protein receptor type II) (BMP type II receptor) (BMPR-II) (BRK-3) Length = 1038 Score = 29.3 bits (64), Expect = 8.2 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Frame = +2 Query: 11 IPSSQIWPLPRRQ-IGARPRSDPARPSTGTWEWRSSELKLHQHRLK 145 +P +QI+PLP++Q + RP S P T E R H+ LK Sbjct: 737 VPPAQIYPLPKQQNLPKRPTSLPLNTKNSTKEPRLKFGNKHKSNLK 782
>FAK1_MOUSE (P34152) Focal adhesion kinase 1 (EC 2.7.10.2) (FADK 1) (pp125FAK)| Length = 1090 Score = 29.3 bits (64), Expect = 8.2 Identities = 20/68 (29%), Positives = 32/68 (47%) Frame = +1 Query: 133 AQVKVADEEVALFQDKESQATAREREEAAVFGSDNGKAAANAPNGSDMAPPKDAADEWPE 312 AQ+ EE + Q++ + +R + A D+G GSD APPK + +P Sbjct: 712 AQLSTILEEEKVQQEERMRMESRRQ---ATVSWDSG--------GSDEAPPKPSRPGYPS 760 Query: 313 PKQTYTFY 336 P+ + FY Sbjct: 761 PRSSEGFY 768
>STAC3_HUMAN (Q96MF2) SH3 and cysteine-rich domain-containing protein 3| Length = 364 Score = 29.3 bits (64), Expect = 8.2 Identities = 21/77 (27%), Positives = 31/77 (40%) Frame = +1 Query: 175 DKESQATAREREEAAVFGSDNGKAAANAPNGSDMAPPKDAADEWPEPKQTYTFYFVKVRS 354 DK++ A EE + GK P G A K D+ +P + YFV + Sbjct: 198 DKKNPVAAMMEEEPESARPEEGKPQDGNPEGDKKAEKKTPDDKHKQPGFQQSHYFVALYR 257 Query: 355 FEDPKLRAKLEQAEKDF 405 F+ LE+ + DF Sbjct: 258 FK------ALEKDDLDF 268
>NCOR2_HUMAN (Q9Y618) Nuclear receptor corepressor 2 (N-CoR2) (Silencing mediator| of retinoic acid and thyroid hormone receptor) (SMRT) (SMRTe) (Thyroid-, retinoic-acid-receptor-associated corepressor) (T3 receptor-associating factor) (TRAC) (CTG repeat p Length = 2517 Score = 29.3 bits (64), Expect = 8.2 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%) Frame = +3 Query: 18 PARFGRCPAARSERGPGPIPLVPP-QGH 98 PAR G PA+ +G P PLVPP GH Sbjct: 1964 PARSGLEPASSPSKGSEPRPLVPPVSGH 1991
>FAK1_RAT (O35346) Focal adhesion kinase 1 (EC 2.7.10.2) (FADK 1) (pp125FAK)| Length = 1055 Score = 29.3 bits (64), Expect = 8.2 Identities = 20/68 (29%), Positives = 32/68 (47%) Frame = +1 Query: 133 AQVKVADEEVALFQDKESQATAREREEAAVFGSDNGKAAANAPNGSDMAPPKDAADEWPE 312 AQ+ EE + Q++ + +R + A D+G GSD APPK + +P Sbjct: 674 AQLSTILEEEKVQQEERMRMESRRQ---ATVSWDSG--------GSDEAPPKPSRPGYPS 722 Query: 313 PKQTYTFY 336 P+ + FY Sbjct: 723 PRSSEGFY 730
>FAK1_HUMAN (Q05397) Focal adhesion kinase 1 (EC 2.7.10.2) (FADK 1) (pp125FAK)| (Protein-tyrosine kinase 2) Length = 1052 Score = 29.3 bits (64), Expect = 8.2 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%) Frame = +1 Query: 166 LFQDKESQATAREREEA---AVFGSDNGKAAANAPNGSDMAPPKDAADEWPEPKQTYTFY 336 + +++++Q R R E+ A D+G GSD APPK + +P P+ + FY Sbjct: 679 ILEEEKAQQEERMRMESRRQATVSWDSG--------GSDEAPPKPSRPGYPSPRSSEGFY 730
>CLN5_HUMAN (O75503) Ceroid-lipofuscinosis neuronal protein 5 (Protein CLN5)| Length = 407 Score = 29.3 bits (64), Expect = 8.2 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = +2 Query: 5 SQIPSSQIWPLPRRQIGARPRSDP 76 S IPS + WP+P ++ RP+ DP Sbjct: 94 SGIPSRRHWPVPYKRFDFRPKPDP 117
>TMPB_TREPH (P29720) Treponemal membrane protein B precursor (Antigen tmpB)| Length = 384 Score = 29.3 bits (64), Expect = 8.2 Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 3/98 (3%) Frame = +1 Query: 118 AEAAPAQVKVADEEVALFQDKESQATAREREEAAVFGSDNGKAAANA---PNGSDMAPPK 288 AE A A+ K A+EE A +E A EEAA KAA A G + P + Sbjct: 251 AEEAAAR-KAAEEEAARIAAEEEAARKAAEEEAA------RKAAEEALYNEKGEKVLPSE 303 Query: 289 DAADEWPEPKQTYTFYFVKVRSFEDPKLRAKLEQAEKD 402 W ++ + + DP + KL +A KD Sbjct: 304 YKVLTWKLDRECFWNIAKNPAVYNDPFMWRKLYEANKD 341
>RLA2A_ARATH (Q9SLF7) 60S acidic ribosomal protein P2-A| Length = 115 Score = 29.3 bits (64), Expect = 8.2 Identities = 21/70 (30%), Positives = 32/70 (45%) Frame = +1 Query: 112 VGAEAAPAQVKVADEEVALFQDKESQATAREREEAAVFGSDNGKAAANAPNGSDMAPPKD 291 VGAE +Q+++ +EV E A RE+ + G G A A+A +G Sbjct: 30 VGAETEDSQIELLLKEVKGKDLAELIAAGREKLASVPSGGGGGVAVASATSGGGGGGGAS 89 Query: 292 AADEWPEPKQ 321 AA+ E K+ Sbjct: 90 AAESKKEEKK 99 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.310 0.128 0.356 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,764,596 Number of Sequences: 219361 Number of extensions: 1309882 Number of successful extensions: 3964 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 3787 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3958 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4757699440 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits)
