ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal30i08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase ... 439 e-123
2RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase ... 411 e-115
3RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase a... 406 e-113
4RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase ... 399 e-111
5RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase ... 397 e-110
6RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase a... 395 e-110
7RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase a... 393 e-109
8RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase ... 393 e-109
9RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase a... 392 e-109
10RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase ... 388 e-108
11RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase a... 387 e-107
12RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase a... 381 e-106
13RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase a... 379 e-105
14RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase a... 375 e-104
15RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase a... 372 e-103
16RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase a... 326 3e-89
17RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase a... 265 7e-71
18RCA_ANASP (P58555) Ribulose bisphosphate carboxylase/oxygenase a... 260 2e-69
19RCA_POPEU (P84562) Ribulose bisphosphate carboxylase/oxygenase a... 47 5e-05
20PSMR_METMP (Q6LWR0) Proteasome-activating nucleotidase (Proteaso... 35 0.20
21CD48A_ARATH (P54609) Cell division control protein 48 homolog A ... 33 0.76
22PRS4_RAT (P62193) 26S protease regulatory subunit 4 (P26s4) (Pro... 33 1.00
23PRS4_MOUSE (P62192) 26S protease regulatory subunit 4 (P26s4) (P... 33 1.00
24PRS4_HUMAN (P62191) 26S protease regulatory subunit 4 (P26s4) (P... 33 1.00
25CD48E_ARATH (Q9LZF6) Cell division control protein 48 homolog E ... 32 1.3
26PRS4_CHICK (Q90732) 26S protease regulatory subunit 4 (P26s4) (P... 32 1.7
27PEX6_PICAN (Q9UVU5) Peroxisomal biogenesis factor 6 (Peroxin-6) 32 1.7
28FTSH_SHIFL (P0AAI4) Cell division protein ftsH (EC 3.4.24.-) 31 2.9
29FTSH_SALTY (P63343) Cell division protease ftsH (EC 3.4.24.-) 31 2.9
30FTSH_SALTI (P63344) Cell division protease ftsH (EC 3.4.24.-) 31 2.9
31FTSH_ECOLI (P0AAI3) Cell division protein ftsH (EC 3.4.24.-) 31 2.9
32FTSH_ECO57 (Q8X9L0) Cell division protease ftsH (EC 3.4.24.-) 31 2.9
33PRS6A_BRACM (O23894) 26S protease regulatory subunit 6A homolog ... 31 2.9
34MAGL2_HUMAN (Q9UJ55) MAGE-like protein 2 (Necdin-like protein 1)... 31 2.9
35TERA1_CAEEL (P54811) Transitional endoplasmic reticulum ATPase h... 31 2.9
36PRS6A_ORYSA (P46465) 26S protease regulatory subunit 6A homolog ... 31 2.9
37PRS6A_LYCES (P54776) 26S protease regulatory subunit 6A homolog ... 31 2.9
38EPHB6_PANTR (P0C0K6) Ephrin type-B receptor 6 precursor (Tyrosin... 31 3.8
39EPHB6_HUMAN (O15197) Ephrin type-B receptor 6 precursor (Tyrosin... 31 3.8
40PRS4_DROME (P48601) 26S protease regulatory subunit 4 (P26s4) 31 3.8
41FILA_HUMAN (P20930) Filaggrin 31 3.8
42DTD_BURPS (Q63QX1) D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) 31 3.8
43DTD_BURMA (Q62HB3) D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-) 31 3.8
44TERA_RAT (P46462) Transitional endoplasmic reticulum ATPase (TER... 31 3.8
45TERA_PIG (P03974) Transitional endoplasmic reticulum ATPase (TER... 31 3.8
46TERA_MOUSE (Q01853) Transitional endoplasmic reticulum ATPase (T... 31 3.8
47TERA_HUMAN (P55072) Transitional endoplasmic reticulum ATPase (T... 31 3.8
48EPHB6_RAT (P0C0K7) Ephrin type-B receptor 6 precursor (Tyrosine-... 30 4.9
49YNEI_ECOLI (P76149) Aldehyde dehydrogenase-like protein yneI (EC... 30 4.9
50LEPA_HELPY (O25122) GTP-binding protein lepA 30 4.9
51PSMR_ARCFU (O28303) Proteasome-activating nucleotidase (Proteaso... 30 4.9
52CD48B_ARATH (Q9ZPR1) Cell division control protein 48 homolog B ... 30 4.9
53EPHB6_MOUSE (O08644) Ephrin type-B receptor 6 precursor (Tyrosin... 30 4.9
54YMEL1_MOUSE (O88967) ATP-dependent metalloprotease YME1L1 (EC 3.... 30 6.5
55YMEL1_HUMAN (Q96TA2) ATP-dependent metalloprotease YME1L1 (EC 3.... 30 6.5
56RECA_CHLTE (O52393) Protein recA (Recombinase A) 30 6.5
57GP116_HUMAN (Q8IZF2) Probable G-protein coupled receptor 116 pre... 30 6.5
58RECA_IDILO (Q5QUB8) Protein recA (Recombinase A) 30 6.5
59AFG31_MOUSE (Q920A7) AFG3-like protein 1 (EC 3.4.24.-) 30 6.5
60PNPT1_MOUSE (Q8K1R3) Polyribonucleotide nucleotidyltransferase 1... 30 6.5
61PSMR_METAC (Q8TI88) Proteasome-activating nucleotidase (Proteaso... 30 8.4
62PSMR_METMA (Q8PY58) Proteasome-activating nucleotidase (Proteaso... 30 8.4
63LRC24_MOUSE (Q8BHA1) Leucine-rich repeat-containing protein 24 p... 30 8.4
64FTSH_BACPF (P94304) Cell division protein ftsH homolog (EC 3.4.2... 30 8.4
65CD48D_ARATH (Q9SCN8) Putative cell division control protein 48 h... 30 8.4
66RL3_RHOPA (P60456) 50S ribosomal protein L3 (RRP-L3) 30 8.4
67FTSH_RICPR (Q9ZEA2) Cell division protein ftsH homolog (EC 3.4.2... 30 8.4
68FTSH_RICCN (Q92JJ9) Cell division protein ftsH homolog (EC 3.4.2... 30 8.4
69FTSH_BACSU (P37476) Cell division protein ftsH homolog (EC 3.4.2... 30 8.4
70PNPT1_PONPY (Q5RCW2) Polyribonucleotide nucleotidyltransferase 1... 30 8.4
71PNPT1_HUMAN (Q8TCS8) Polyribonucleotide nucleotidyltransferase 1... 30 8.4
72CDC48_CAPAN (Q96372) Cell division cycle protein 48 homolog 30 8.4 
>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
           chloroplast precursor (RuBisCO activase A) (RA A)
          Length = 464

 Score =  439 bits (1129), Expect = e-123
 Identities = 216/218 (99%), Positives = 216/218 (99%)
 Frame = +1

Query: 7   EXAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADA 186
           E AKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADA
Sbjct: 191 EPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADA 250

Query: 187 PTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIF 366
           PTNVQLPGMYNK ENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIF
Sbjct: 251 PTNVQLPGMYNKRENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIF 310

Query: 367 QTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGP 546
           QTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGP
Sbjct: 311 QTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGP 370

Query: 547 VTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMS 660
           VTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMS
Sbjct: 371 VTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMS 408
to top
>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,|
           chloroplast precursor (RuBisCO activase B) (RA B)
          Length = 425

 Score =  411 bits (1057), Expect = e-115
 Identities = 196/218 (89%), Positives = 210/218 (96%)
 Frame = +1

Query: 7   EXAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADA 186
           E AKLIRQRYREAAD+I KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADA
Sbjct: 188 EPAKLIRQRYREAADIINKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADA 247

Query: 187 PTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIF 366
           PTNVQLPGMYNKEENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF
Sbjct: 248 PTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIF 307

Query: 367 QTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGP 546
           +TDNV DE+VV++VDTFPGQSIDFFGALRARVYDDEVRKWVG  G+ENI KRLVNSR+GP
Sbjct: 308 RTDNVPDEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVGEIGVENISKRLVNSREGP 367

Query: 547 VTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMS 660
            TF+QPKMT+EKL+EYGHMLVQEQ+NVKRVQLAD Y+S
Sbjct: 368 PTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLS 405
to top
>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 432

 Score =  406 bits (1044), Expect = e-113
 Identities = 193/218 (88%), Positives = 209/218 (95%)
 Frame = +1

Query: 7   EXAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADA 186
           E AKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 
Sbjct: 191 EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADN 250

Query: 187 PTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIF 366
           PTNVQLPGMYNKE+NPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTRDDR+GVCKGIF
Sbjct: 251 PTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIF 310

Query: 367 QTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGP 546
           +TDNV DE +VKIVD+FPGQSIDFFGALRARVYDDEVRKWV  TG+ENIGKRLVNSR+GP
Sbjct: 311 RTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGP 370

Query: 547 VTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMS 660
             FEQPKMT+EKL+EYG+MLV+EQ+NVKRVQLA+ Y+S
Sbjct: 371 PEFEQPKMTIEKLIEYGYMLVKEQENVKRVQLAEQYLS 408
to top
>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
           (RubisCO activase beta form)
          Length = 435

 Score =  399 bits (1026), Expect = e-111
 Identities = 189/218 (86%), Positives = 207/218 (94%)
 Frame = +1

Query: 7   EXAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADA 186
           E AKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 
Sbjct: 201 EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADN 260

Query: 187 PTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIF 366
           PTNVQLPGMYNKEENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF
Sbjct: 261 PTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIF 320

Query: 367 QTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGP 546
           +TDNV +E +VK+VD FPGQSIDFFGALRARVYDDEVRKWV   G++ IGK+LVNS++GP
Sbjct: 321 RTDNVPEEDIVKVVDQFPGQSIDFFGALRARVYDDEVRKWVSEVGVDTIGKKLVNSKEGP 380

Query: 547 VTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMS 660
            TFEQPKMT++KLL+YG+MLV+EQ+NVKRVQLAD YMS
Sbjct: 381 PTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYMS 418
to top
>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
           (RubisCO activase alpha form)
          Length = 476

 Score =  397 bits (1019), Expect = e-110
 Identities = 189/218 (86%), Positives = 206/218 (94%)
 Frame = +1

Query: 7   EXAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADA 186
           E AKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 
Sbjct: 201 EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADN 260

Query: 187 PTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIF 366
           PTNVQLPGMYNKEENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF
Sbjct: 261 PTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIF 320

Query: 367 QTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGP 546
           +TDNV+D+ +VK+VDTFPGQSIDFFGALRARVY DEVRKWV   G++ IGK+LVNS++GP
Sbjct: 321 RTDNVADDDIVKLVDTFPGQSIDFFGALRARVYHDEVRKWVSEVGVDTIGKKLVNSKEGP 380

Query: 547 VTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMS 660
            +FEQPKMT++KLL YG MLVQEQ+NVKRVQLAD YMS
Sbjct: 381 PSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMS 418
to top
>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 459

 Score =  395 bits (1016), Expect = e-110
 Identities = 190/217 (87%), Positives = 208/217 (95%)
 Frame = +1

Query: 7   EXAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADA 186
           E AKLIRQRYREAA++I+KG MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 
Sbjct: 200 EPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADN 259

Query: 187 PTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIF 366
           PTNVQLPGMYNK+EN RVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF
Sbjct: 260 PTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIF 319

Query: 367 QTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGP 546
           +TDNV +E+VVKIVD+FPGQSIDFFGALRARVYDDEVRKWV  TGIE IG++L+NSRDGP
Sbjct: 320 RTDNVPEEAVVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSGTGIELIGEKLLNSRDGP 379

Query: 547 VTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYM 657
            TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQLA+TY+
Sbjct: 380 PTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLAETYL 416
to top
>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 433

 Score =  393 bits (1009), Expect = e-109
 Identities = 186/218 (85%), Positives = 206/218 (94%)
 Frame = +1

Query: 7   EXAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADA 186
           E AKLIRQRYREA+D+IKKGKM CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 
Sbjct: 197 EPAKLIRQRYREASDLIKKGKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADN 256

Query: 187 PTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIF 366
           PTNVQLPGMYNKE+NPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF
Sbjct: 257 PTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIF 316

Query: 367 QTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGP 546
           +TD V +E VV++VDTFPGQSIDFFGALRARVYDDEVR+WV  TG+ENI ++LVNS++GP
Sbjct: 317 RTDGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVSETGVENIARKLVNSKEGP 376

Query: 547 VTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMS 660
            TFEQPK+T+EKLLEYGHMLV EQ+NVKRVQLAD Y++
Sbjct: 377 PTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLN 414
to top
>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
          Length = 439

 Score =  393 bits (1009), Expect = e-109
 Identities = 189/217 (87%), Positives = 206/217 (94%)
 Frame = +1

Query: 7   EXAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADA 186
           E AKLIRQRYREAA++I+KG +CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 
Sbjct: 205 EPAKLIRQRYREAAEIIRKGNICCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADN 264

Query: 187 PTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIF 366
           PTNVQLPGMYNK+EN RVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF
Sbjct: 265 PTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIF 324

Query: 367 QTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGP 546
           +TDNV +E+V+KIVDTFPGQSIDFFGALRARVYDDEVRKWV  TGIE IG +L+NS DGP
Sbjct: 325 RTDNVPEEAVIKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGTGIEAIGDKLLNSFDGP 384

Query: 547 VTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYM 657
            TFEQPKMTVEKLLEYG+MLVQEQ+NVKRVQLA+TY+
Sbjct: 385 PTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLAETYL 421
to top
>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 437

 Score =  392 bits (1007), Expect = e-109
 Identities = 186/218 (85%), Positives = 207/218 (94%)
 Frame = +1

Query: 7   EXAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADA 186
           E AKLIRQRYREAAD+I+KGKMC LFINDLDAGAGR+GGTTQYTVNNQMVNATLMNIAD 
Sbjct: 201 EPAKLIRQRYREAADIIRKGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADN 260

Query: 187 PTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIF 366
           PTNVQLPGMYNKEENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIF
Sbjct: 261 PTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCIGIF 320

Query: 367 QTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGP 546
           ++DNV+ E +VK+VDTFPGQSIDFFGALRARVYDDEVRKW+   G+++IGK+LVNS++GP
Sbjct: 321 RSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWITGVGVDSIGKKLVNSKEGP 380

Query: 547 VTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMS 660
            TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQLAD Y+S
Sbjct: 381 PTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLS 418
to top
>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
          Length = 442

 Score =  388 bits (997), Expect = e-108
 Identities = 188/217 (86%), Positives = 201/217 (92%)
 Frame = +1

Query: 7   EXAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADA 186
           E AKLIRQRYREAA++I+KG MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 
Sbjct: 205 EPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADN 264

Query: 187 PTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIF 366
           PTNVQLPGMYNK+EN RVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIF
Sbjct: 265 PTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIF 324

Query: 367 QTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGP 546
           +TDNV  E VVKIVD FPGQSIDFFGALRARVYDDEVRKWV  TGIE IG +L+NS DGP
Sbjct: 325 RTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGDKLLNSFDGP 384

Query: 547 VTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYM 657
            TFEQPKMT+EKLLEYG+MLVQEQ+NVKRVQLAD Y+
Sbjct: 385 PTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYL 421
to top
>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 474

 Score =  387 bits (993), Expect = e-107
 Identities = 186/218 (85%), Positives = 202/218 (92%)
 Frame = +1

Query: 7   EXAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADA 186
           E AKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 
Sbjct: 201 EPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADN 260

Query: 187 PTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIF 366
           PTNVQLPGMYNKEEN RVPI+ TGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF
Sbjct: 261 PTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIF 320

Query: 367 QTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGP 546
           +TD + DE +V +VD FPGQSIDFFGALRARVYDDEVRK+V S G+E IGKRLVNSR+GP
Sbjct: 321 RTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSREGP 380

Query: 547 VTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMS 660
             FEQP+MT EKL+EYG+MLV EQ+NVKRVQLA+TY+S
Sbjct: 381 PVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLS 418
to top
>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 439

 Score =  381 bits (979), Expect = e-106
 Identities = 179/218 (82%), Positives = 202/218 (92%)
 Frame = +1

Query: 7   EXAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADA 186
           E AKLIRQRYREAAD+I KGKMC LFINDLDAGAGR+GGTTQYTVNNQMVNATLMNIAD 
Sbjct: 203 EPAKLIRQRYREAADLIAKGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADN 262

Query: 187 PTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIF 366
           PTNVQLPGMYNKEEN RVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTRDDR+GVCKGIF
Sbjct: 263 PTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIF 322

Query: 367 QTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGP 546
           +TD V +E + K+VDTFPGQSIDFFGALRARVYDDEVRKW+   G++  GK+LVNS++GP
Sbjct: 323 RTDGVPEEDITKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDATGKKLVNSKEGP 382

Query: 547 VTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMS 660
            TF+QPKM+++KLL+YG+MLVQEQ+NVKRVQLAD Y++
Sbjct: 383 PTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYLN 420
to top
>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 472

 Score =  379 bits (972), Expect = e-105
 Identities = 181/218 (83%), Positives = 200/218 (91%)
 Frame = +1

Query: 7   EXAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADA 186
           E AKLIRQRYREAAD+I KGKMC LFINDL+ GAGRMGGTTQYTVNNQMVNATLMNIAD 
Sbjct: 199 EPAKLIRQRYREAADLIAKGKMCALFINDLEPGAGRMGGTTQYTVNNQMVNATLMNIADN 258

Query: 187 PTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIF 366
           PTNVQLPGMYNK++N RVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIF
Sbjct: 259 PTNVQLPGMYNKQDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIF 318

Query: 367 QTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGP 546
           +TD V  E VVK+VD FPGQSIDFFGALRARVY DEVRKWV S G++N+GK+LVNS+DGP
Sbjct: 319 KTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRKWVNSVGVDNVGKKLVNSKDGP 378

Query: 547 VTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMS 660
             FEQP+MT++KL+EYG+MLVQEQ+NVKRVQLAD YMS
Sbjct: 379 PVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMS 416
to top
>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 413

 Score =  375 bits (964), Expect = e-104
 Identities = 178/212 (83%), Positives = 196/212 (92%)
 Frame = +1

Query: 7   EXAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADA 186
           E AKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGR+GGTTQYTVNNQMVNATLMNIAD 
Sbjct: 198 EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADN 257

Query: 187 PTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIF 366
           PTNVQLPGMYNKEENPRVPI+VTGNDFSTLYAPLIRDGRM+KFYWAPTR+DRIG+C GIF
Sbjct: 258 PTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMDKFYWAPTREDRIGICTGIF 317

Query: 367 QTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGP 546
           +TD V  E +VK+VDTFPGQSIDFFGALRARVYDDEVRKW    G+E IG+ LVNS++ P
Sbjct: 318 RTDGVPFEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWAVGVGVERIGRNLVNSKESP 377

Query: 547 VTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQL 642
            TF+QPKMT+EKLLEYG+MLV EQ+NVKRV+L
Sbjct: 378 PTFDQPKMTIEKLLEYGNMLVMEQENVKRVKL 409
to top
>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 441

 Score =  372 bits (956), Expect = e-103
 Identities = 175/218 (80%), Positives = 201/218 (92%)
 Frame = +1

Query: 7   EXAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADA 186
           E AKLIRQRYREA+D+IKKGKMC LFINDLDAGAGR+GGTTQYTVNNQMVNATLMNIAD 
Sbjct: 205 EPAKLIRQRYREASDLIKKGKMCVLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADN 264

Query: 187 PTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIF 366
           PTNVQLPGMYNKE+N RVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF
Sbjct: 265 PTNVQLPGMYNKEDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIF 324

Query: 367 QTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGP 546
           +TD V ++ +V++VD  PGQSIDFFGALRARVYDDEVRKW+   G++++GK+LVNS++GP
Sbjct: 325 RTDGVPEKDIVELVDKHPGQSIDFFGALRARVYDDEVRKWISGVGVDSVGKKLVNSKEGP 384

Query: 547 VTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMS 660
            TF+QPKMT++KLL Y  MLVQEQ+NVKRVQLAD Y++
Sbjct: 385 PTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQYLN 422
to top
>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 408

 Score =  326 bits (836), Expect = 3e-89
 Identities = 161/218 (73%), Positives = 181/218 (83%)
 Frame = +1

Query: 7   EXAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADA 186
           E AKLIR RYREA+D+IKKG+MC LFINDLDAGAGRMG TTQYTVNNQMVNATLMNIAD 
Sbjct: 174 EPAKLIRTRYREASDIIKKGRMCSLFINDLDAGAGRMGDTTQYTVNNQMVNATLMNIADN 233

Query: 187 PTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIF 366
           PTNVQLPG+Y  EE PRVPIV TGNDFSTLYAPLIRDGRMEK+YW PTR+DRIGVC GIF
Sbjct: 234 PTNVQLPGVYKNEEIPRVPIVCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIF 293

Query: 367 QTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGP 546
           Q DNV    V  +VDTFPGQSIDFFGALRARVYDD VR+W+  TG++ IG++LVN+R   
Sbjct: 294 QEDNVQRREVENLVDTFPGQSIDFFGALRARVYDDMVRQWITDTGVDKIGQQLVNARQ-K 352

Query: 547 VTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMS 660
           V   +  M +  L++YG  LV EQ+NVKRVQLAD Y+S
Sbjct: 353 VAMPKVSMDLNVLIKYGKSLVDEQENVKRVQLADAYLS 390
to top
>RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 415

 Score =  265 bits (678), Expect = 7e-71
 Identities = 128/215 (59%), Positives = 161/215 (74%), Gaps = 1/215 (0%)
 Frame = +1

Query: 13  AKLIRQRYREAADMIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAP 189
           A+LIR RYRE A++IK +GKMC L INDLDAGAGR    TQYTVN Q+VNATLMNIAD P
Sbjct: 75  ARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLVNATLMNIADNP 134

Query: 190 TNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQ 369
           T+VQLPG Y+     RVPI+VTGNDFSTLYAPLIRDGRMEKFYW P RD+++G+  GIF 
Sbjct: 135 TDVQLPGSYDSTPLRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPHRDEKVGIVGGIFA 194

Query: 370 TDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPV 549
            D +S   V K+VD+FP QSIDFF ALR+R+YD+++R ++   G EN+  R+VNS +GP 
Sbjct: 195 EDGLSQRDVEKLVDSFPNQSIDFFSALRSRIYDEQIRDFIHQVGYENVSLRVVNSLEGPP 254

Query: 550 TFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTY 654
            F++P  T+  L+E  + +V EQ  ++  QL D Y
Sbjct: 255 AFKKPDFTLSHLIESANFMVAEQKRIETSQLVDEY 289
to top
>RCA_ANASP (P58555) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 414

 Score =  260 bits (665), Expect = 2e-69
 Identities = 127/215 (59%), Positives = 159/215 (73%), Gaps = 1/215 (0%)
 Frame = +1

Query: 13  AKLIRQRYREAADMIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAP 189
           A+LIR RYRE A++IK +GKMC L INDLDAGAGR    TQYTVN Q+VNATLMNIAD P
Sbjct: 75  ARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLVNATLMNIADNP 134

Query: 190 TNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQ 369
           T+VQLPG Y+     RVPI+VTGNDFSTLYAPLIRDGRMEKFYW P RDD++G+  GIF 
Sbjct: 135 TDVQLPGSYDSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRDDKVGIVGGIFA 194

Query: 370 TDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPV 549
            D +S   + ++VDTFP QSIDFF ALR+R+YD ++R ++   G E I  R+VNS + P 
Sbjct: 195 EDGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIRDFIHKVGFERISLRVVNSLEAPP 254

Query: 550 TFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTY 654
            F++P  ++  L+E G++++ EQ  V   QL D Y
Sbjct: 255 EFKKPDFSLAHLIESGNLVLGEQQRVDNSQLVDEY 289
to top
>RCA_POPEU (P84562) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast (RuBisCO activase) (RA) (Fragments)
          Length = 32

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 27/60 (45%), Positives = 30/60 (50%)
 Frame = +1

Query: 403 IVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEK 582
           +VDTFPGQSIDFFGAL                            R+GP TFEQP MT+EK
Sbjct: 1   LVDTFPGQSIDFFGAL----------------------------REGPPTFEQPAMTIEK 32
to top
>PSMR_METMP (Q6LWR0) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 407

 Score = 35.0 bits (79), Expect = 0.20
 Identities = 43/195 (22%), Positives = 78/195 (40%), Gaps = 5/195 (2%)
 Frame = +1

Query: 7   EXAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADA 186
           E AKL+R  ++ A    K+   C +FI+++DA A +   T   T  ++ V  TLM +   
Sbjct: 225 EGAKLVRDVFKLA----KEKSPCIIFIDEIDAVASKR--TESLTGGDREVQRTLMQL--- 275

Query: 187 PTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKF--YWAPTRDDRIGVCKG 360
                L  M   +    V I+   N    L   ++R GR ++      P  D R+ + K 
Sbjct: 276 -----LAEMDGFDSRGDVKIIAATNRPDILDPAILRPGRFDRIIEISMPDEDGRLEILKI 330

Query: 361 IFQTDN---VSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVN 531
             +  N   V    V KI +   G  +             E R+++          ++  
Sbjct: 331 HTEKMNLKGVDLREVAKIAENMVGADLKAVCTEAGMFAIREEREFIKMDDFREAISKITG 390

Query: 532 SRDGPVTFEQPKMTV 576
            ++   +++ P++TV
Sbjct: 391 KKE-KCSYDMPQLTV 404
to top
>CD48A_ARATH (P54609) Cell division control protein 48 homolog A (AtCDC48a)|
          Length = 809

 Score = 33.1 bits (74), Expect = 0.76
 Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 13/145 (8%)
 Frame = +1

Query: 37  REAADMIKKGKMCCLFINDLDA-------GAGRMGGTTQYTVNNQMVNATLMNIADAPTN 195
           RE  D  ++   C LF ++LD+       G+G  GG     V NQ++  T M+  +A   
Sbjct: 563 REIFDKARQSAPCVLFFDELDSIATQRGGGSGGDGGGAADRVLNQLL--TEMDGMNAKKT 620

Query: 196 VQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYW--APTRDDRIGVCKGIFQ 369
           V + G  N+ +               + + L+R GR+++  +   P  D R+ + K   +
Sbjct: 621 VFIIGATNRPD--------------IIDSALLRPGRLDQLIYIPLPDEDSRLNIFKAALR 666

Query: 370 TDNVSDE----SVVKIVDTFPGQSI 432
              ++ +    ++ K    F G  I
Sbjct: 667 KSPIAKDVDIGALAKYTQGFSGADI 691
to top
>PRS4_RAT (P62193) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score = 32.7 bits (73), Expect = 1.00
 Identities = 37/150 (24%), Positives = 69/150 (46%), Gaps = 11/150 (7%)
 Frame = +1

Query: 16  KLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNN---QMVNATLMNIADA 186
           KL+R+ +R A +         +FI+++DA      GT +Y  N+   + +  T++ + + 
Sbjct: 265 KLVRELFRVAEEHAPS----IVFIDEIDAI-----GTKRYDSNSGGEREIQRTMLELLN- 314

Query: 187 PTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIF 366
               QL G  ++ +   V +++  N   TL   LIR GR+++    P  D++    K IF
Sbjct: 315 ----QLDGFDSRGD---VKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK--TKKRIF 365

Query: 367 Q--------TDNVSDESVVKIVDTFPGQSI 432
           Q         D+V+ + ++   D   G  I
Sbjct: 366 QIHTSRMTLADDVTLDDLIMAKDDLSGADI 395
to top
>PRS4_MOUSE (P62192) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score = 32.7 bits (73), Expect = 1.00
 Identities = 37/150 (24%), Positives = 69/150 (46%), Gaps = 11/150 (7%)
 Frame = +1

Query: 16  KLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNN---QMVNATLMNIADA 186
           KL+R+ +R A +         +FI+++DA      GT +Y  N+   + +  T++ + + 
Sbjct: 265 KLVRELFRVAEEHAPS----IVFIDEIDAI-----GTKRYDSNSGGEREIQRTMLELLN- 314

Query: 187 PTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIF 366
               QL G  ++ +   V +++  N   TL   LIR GR+++    P  D++    K IF
Sbjct: 315 ----QLDGFDSRGD---VKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK--TKKRIF 365

Query: 367 Q--------TDNVSDESVVKIVDTFPGQSI 432
           Q         D+V+ + ++   D   G  I
Sbjct: 366 QIHTSRMTLADDVTLDDLIMAKDDLSGADI 395
to top
>PRS4_HUMAN (P62191) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score = 32.7 bits (73), Expect = 1.00
 Identities = 37/150 (24%), Positives = 69/150 (46%), Gaps = 11/150 (7%)
 Frame = +1

Query: 16  KLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNN---QMVNATLMNIADA 186
           KL+R+ +R A +         +FI+++DA      GT +Y  N+   + +  T++ + + 
Sbjct: 265 KLVRELFRVAEEHAPS----IVFIDEIDAI-----GTKRYDSNSGGEREIQRTMLELLN- 314

Query: 187 PTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIF 366
               QL G  ++ +   V +++  N   TL   LIR GR+++    P  D++    K IF
Sbjct: 315 ----QLDGFDSRGD---VKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK--TKKRIF 365

Query: 367 Q--------TDNVSDESVVKIVDTFPGQSI 432
           Q         D+V+ + ++   D   G  I
Sbjct: 366 QIHTSRMTLADDVTLDDLIMAKDDLSGADI 395
to top
>CD48E_ARATH (Q9LZF6) Cell division control protein 48 homolog E (AtCDC48e)|
           (Transitional endoplasmic reticulum ATPase E)
          Length = 810

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 6/138 (4%)
 Frame = +1

Query: 37  REAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMY 216
           RE  D  ++   C LF ++LD+ A + G +                 AD   N  L  M 
Sbjct: 563 REIFDKARQSAPCVLFFDELDSIATQRGNSA----------GDAGGAADRVLNQLLTEMD 612

Query: 217 NKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYW--APTRDDRIGVCKGIFQTDNVSDE 390
                  V I+   N    + + L+R GR+++  +   P  D R+ + K   +   V+ +
Sbjct: 613 GMNAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKACLRKSPVAKD 672

Query: 391 ----SVVKIVDTFPGQSI 432
               ++ K    F G  I
Sbjct: 673 VDVTALAKYTQGFSGADI 690
to top
>PRS4_CHICK (Q90732) 26S protease regulatory subunit 4 (P26s4) (Proteasome 26S|
           subunit ATPase 1)
          Length = 440

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 37/150 (24%), Positives = 70/150 (46%), Gaps = 11/150 (7%)
 Frame = +1

Query: 16  KLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNN---QMVNATLMNIADA 186
           KL+R+ +R A    ++     +FI+++DA      GT +Y  N+   + +  T++ + + 
Sbjct: 265 KLVRELFRVA----EEHGPSIVFIDEIDAI-----GTKRYDSNSGGEREIQRTMLELLN- 314

Query: 187 PTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIF 366
               QL G  ++ +   V +++  N   TL   LIR GR+++    P  D++    K IF
Sbjct: 315 ----QLDGFDSRGD---VKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK--TKKRIF 365

Query: 367 Q--------TDNVSDESVVKIVDTFPGQSI 432
           Q         D+V+ + ++   D   G  I
Sbjct: 366 QIHTSRMTLADDVTLDELIMAKDDLSGADI 395
to top
>PEX6_PICAN (Q9UVU5) Peroxisomal biogenesis factor 6 (Peroxin-6)|
          Length = 1135

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 6/146 (4%)
 Frame = +1

Query: 22   IRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQ 201
            +R+ +++A D     K C +F ++LD+ A + G        NQ  +  +M+   +    +
Sbjct: 894  VRRVFQKARD----AKPCVIFFDELDSVAPKRG--------NQGDSGGVMDRIVSQLLAE 941

Query: 202  LPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYW---APTRDDRIGVCKGI--- 363
            L GM   E    V +V   N    L   L+R GR +K  +   A T + +  + + +   
Sbjct: 942  LDGMSGAEGGDGVFVVGATNRPDLLDEALLRPGRFDKMLYLGIADTHEKQAKIIQALTRK 1001

Query: 364  FQTDNVSDESVVKIVDTFPGQSIDFF 441
            FQ D   D   +     F     DF+
Sbjct: 1002 FQLDPSVDLGRIAETCPFTYTGADFY 1027
to top
>FTSH_SHIFL (P0AAI4) Cell division protein ftsH (EC 3.4.24.-)|
          Length = 644

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
 Frame = +1

Query: 31  RYREAADMIKKGKMCCLFINDLDA-----GAGRMGGTTQYTVNNQMVNATLMNIADAPTN 195
           R R+  +  KK   C +FI+++DA     GAG  GG   +    Q +N  L         
Sbjct: 232 RVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGG---HDEREQTLNQML--------- 279

Query: 196 VQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK 312
           V++ G    E N  + ++   N    L   L+R GR ++
Sbjct: 280 VEMDGF---EGNEGIIVIAATNRPDVLDPALLRPGRFDR 315
to top
>FTSH_SALTY (P63343) Cell division protease ftsH (EC 3.4.24.-)|
          Length = 644

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
 Frame = +1

Query: 31  RYREAADMIKKGKMCCLFINDLDA-----GAGRMGGTTQYTVNNQMVNATLMNIADAPTN 195
           R R+  +  KK   C +FI+++DA     GAG  GG   +    Q +N  L         
Sbjct: 232 RVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGG---HDEREQTLNQML--------- 279

Query: 196 VQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK 312
           V++ G    E N  + ++   N    L   L+R GR ++
Sbjct: 280 VEMDGF---EGNEGIIVIAATNRPDVLDPALLRPGRFDR 315
to top
>FTSH_SALTI (P63344) Cell division protease ftsH (EC 3.4.24.-)|
          Length = 644

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
 Frame = +1

Query: 31  RYREAADMIKKGKMCCLFINDLDA-----GAGRMGGTTQYTVNNQMVNATLMNIADAPTN 195
           R R+  +  KK   C +FI+++DA     GAG  GG   +    Q +N  L         
Sbjct: 232 RVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGG---HDEREQTLNQML--------- 279

Query: 196 VQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK 312
           V++ G    E N  + ++   N    L   L+R GR ++
Sbjct: 280 VEMDGF---EGNEGIIVIAATNRPDVLDPALLRPGRFDR 315
to top
>FTSH_ECOLI (P0AAI3) Cell division protein ftsH (EC 3.4.24.-)|
          Length = 644

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
 Frame = +1

Query: 31  RYREAADMIKKGKMCCLFINDLDA-----GAGRMGGTTQYTVNNQMVNATLMNIADAPTN 195
           R R+  +  KK   C +FI+++DA     GAG  GG   +    Q +N  L         
Sbjct: 232 RVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGG---HDEREQTLNQML--------- 279

Query: 196 VQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK 312
           V++ G    E N  + ++   N    L   L+R GR ++
Sbjct: 280 VEMDGF---EGNEGIIVIAATNRPDVLDPALLRPGRFDR 315
to top
>FTSH_ECO57 (Q8X9L0) Cell division protease ftsH (EC 3.4.24.-)|
          Length = 644

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
 Frame = +1

Query: 31  RYREAADMIKKGKMCCLFINDLDA-----GAGRMGGTTQYTVNNQMVNATLMNIADAPTN 195
           R R+  +  KK   C +FI+++DA     GAG  GG   +    Q +N  L         
Sbjct: 232 RVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGG---HDEREQTLNQML--------- 279

Query: 196 VQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK 312
           V++ G    E N  + ++   N    L   L+R GR ++
Sbjct: 280 VEMDGF---EGNEGIIVIAATNRPDVLDPALLRPGRFDR 315
to top
>PRS6A_BRACM (O23894) 26S protease regulatory subunit 6A homolog (TAT-binding|
           protein homolog 1) (TBP-1)
          Length = 424

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 7/149 (4%)
 Frame = +1

Query: 7   EXAKLIRQRYREAADMIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIAD 183
           + AKL+R    +A  + K+   C +FI+++DA G  R          ++ V  T++ + +
Sbjct: 248 DGAKLVR----DAFQLAKEKAPCIIFIDEIDAIGTKRFDSEVS---GDREVQRTMLELLN 300

Query: 184 APTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK--FYWAPTRDDRIGVCK 357
                QL G  + E   R+ ++   N    L   L+R GR+++   +  PT + R  + +
Sbjct: 301 -----QLDGFSSDE---RIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQ 352

Query: 358 GIFQTDN----VSDESVVKIVDTFPGQSI 432
              +  N    V+ E + +  D F G  +
Sbjct: 353 IHSRKMNVHPDVNFEELARSTDDFNGAQL 381
to top
>MAGL2_HUMAN (Q9UJ55) MAGE-like protein 2 (Necdin-like protein 1) (Protein nM15)|
          Length = 529

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 2/81 (2%)
 Frame = -2

Query: 349 HRYGRHGWEPSRTSPYDHHGSEEXXXXXXXXXXXRWAHGGSPPCCTCQGAARWWGHR--R 176
           H    H W+  R  P+++    +            W H  +P     +G + W G    R
Sbjct: 181 HTLAFHDWQGPR--PWENLNLSDWEVQSPIQVSGDWEHPNTP-----RGLSGWEGPSTSR 233

Query: 175 CSSGWRSPSGC*RCTAWFRPS 113
             SGW  PS     +AW  PS
Sbjct: 234 ILSGWEGPSASWALSAWEGPS 254
to top
>TERA1_CAEEL (P54811) Transitional endoplasmic reticulum ATPase homolog 1|
           (p97/CDC48 homolog 1)
          Length = 809

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
 Frame = +1

Query: 37  REAADMIKKGKMCCLFINDLDA-------GAGRMGGTTQYTVNNQMVNATLMNIADAPTN 195
           R+  D  +    C LF ++LD+       GAG  GG     V NQ++  T M+  +A  N
Sbjct: 566 RDVFDKARAAAPCVLFFDELDSIAKARGGGAGGDGGGASDRVINQVL--TEMDGMNAKKN 623

Query: 196 VQLPGMYNKEENPRVPIVVTGNDFSTLYAPL 288
           V + G  N+ +     ++  G     +Y PL
Sbjct: 624 VFIIGATNRPDIIDPAVLRPGRLDQLIYIPL 654
to top
>PRS6A_ORYSA (P46465) 26S protease regulatory subunit 6A homolog (TAT-binding|
           protein homolog 1) (TBP-1)
          Length = 429

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
 Frame = +1

Query: 7   EXAKLIRQRYREAADMIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIAD 183
           + AKL+R    +A  + K+   C +FI+++DA G  R          ++ V  T++ + +
Sbjct: 253 DGAKLVR----DAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVS---GDREVQRTMLELLN 305

Query: 184 APTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK 312
                QL G  + E   R+ ++   N    L   L+R GR+++
Sbjct: 306 -----QLDGFSSDE---RIKVIAATNRADILDPALMRSGRLDR 340
to top
>PRS6A_LYCES (P54776) 26S protease regulatory subunit 6A homolog (TAT-binding|
           protein homolog 1) (TBP-1) (Mg(2+)-dependent ATPase 1)
           (LEMA-1)
          Length = 423

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 34/149 (22%), Positives = 66/149 (44%), Gaps = 7/149 (4%)
 Frame = +1

Query: 7   EXAKLIRQRYREAADMIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIAD 183
           + AKL+R    +A  + K+   C +FI+++DA G  R          ++ V  T++ + +
Sbjct: 247 DGAKLVR----DAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVS---GDREVQRTMLELLN 299

Query: 184 APTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK--FYWAPTRDDRIGVCK 357
                QL G      + R+ ++   N    L   L+R GR+++   +  PT + R  + +
Sbjct: 300 -----QLDGF---SSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQ 351

Query: 358 GIFQTDNVSD----ESVVKIVDTFPGQSI 432
              +  NV+     E + +  D F G  +
Sbjct: 352 IHSRKMNVNPDVNFEELARSTDDFNGAQL 380
to top
>EPHB6_PANTR (P0C0K6) Ephrin type-B receptor 6 precursor (Tyrosine-protein|
           kinase-defective receptor EPH-6)
          Length = 1005

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
 Frame = -2

Query: 235 GGSPPCCTCQGAARWW---GHRRCSSGWRSPSGC*RCTAWFRPSY 110
           GGSPP   C G  +W    G  RC  G++   G   C A  R  Y
Sbjct: 262 GGSPPRLHCNGEGKWMVAVGGCRCQPGYQPARGDKACQACPRGLY 306
to top
>EPHB6_HUMAN (O15197) Ephrin type-B receptor 6 precursor (Tyrosine-protein|
           kinase-defective receptor EPH-6) (HEP)
          Length = 1006

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
 Frame = -2

Query: 235 GGSPPCCTCQGAARWW---GHRRCSSGWRSPSGC*RCTAWFRPSY 110
           GGSPP   C G  +W    G  RC  G++   G   C A  R  Y
Sbjct: 263 GGSPPRLHCNGEGKWMVAVGGCRCQPGYQPARGDKACQACPRGLY 307
to top
>PRS4_DROME (P48601) 26S protease regulatory subunit 4 (P26s4)|
          Length = 439

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 3/112 (2%)
 Frame = +1

Query: 16  KLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNN---QMVNATLMNIADA 186
           KL+R+ +R A +         +FI+++DA      GT +Y  N+   + +  T++ + + 
Sbjct: 264 KLVRELFRVAEEHAPS----IVFIDEIDAV-----GTKRYDSNSGGEREIQRTMLELLN- 313

Query: 187 PTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDR 342
               QL G  ++ +   V +++  N   TL   LIR GR+++    P  D++
Sbjct: 314 ----QLDGFDSRGD---VKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK 358
to top
>FILA_HUMAN (P20930) Filaggrin|
          Length = 4061

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
 Frame = +3

Query: 99   RWCG*DGRNH--AVHRQQPDGERHPDEHR--RCPHQRAAPWHVQQG 224
            RW G   RNH  +   Q  DG RHP  H   R  H  +A    Q G
Sbjct: 3554 RWSGSASRNHRGSAQEQSRDGSRHPTSHHEDRAGHGHSAESSRQSG 3599



 Score = 30.0 bits (66), Expect = 6.5
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
 Frame = +3

Query: 99   RWCG*DGRNH--AVHRQQPDGERHPDEHR--RCPHQRAAPWHVQQG 224
            RW G   RNH  +   Q  DG RHP  H+  R  H  +A    Q G
Sbjct: 2906 RWSGSASRNHHGSAQEQLRDGSRHPRSHQEDRAGHGHSADSSRQSG 2951



 Score = 30.0 bits (66), Expect = 6.5
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
 Frame = +3

Query: 99   RWCG*DGRNH--AVHRQQPDGERHPDEHR--RCPHQRAAPWHVQQG 224
            RW G   RNH  +   Q  DG RHP  H+  R  H  +A    Q G
Sbjct: 2582 RWSGSASRNHHGSAQEQLRDGSRHPRSHQEDRAGHGHSADSSRQSG 2627



 Score = 30.0 bits (66), Expect = 6.5
 Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
 Frame = +3

Query: 99   RWCG*DGRNH--AVHRQQPDGERHPDEHR--RCPHQRAAPWHVQQG 224
            RW G   RNH  +   Q  DG RHP  H   R  H  +A    Q G
Sbjct: 1933 RWSGSASRNHLGSAWEQSRDGSRHPGSHHEDRAGHGHSADSSRQSG 1978
to top
>DTD_BURPS (Q63QX1) D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-)|
          Length = 152

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
 Frame = +1

Query: 64  GKMCCLFINDLDAGAGRMGG---TTQYTV---NNQMVNATLMNIADAPTNVQLPGMYNKE 225
           GKM  L +++LD GAGR GG    +Q+T+    N  +  +    A      +L   + + 
Sbjct: 60  GKMN-LPVSNLD-GAGRAGGLLLVSQFTLAADTNSGLRPSFTPAAPPDEGERLFDYFVRR 117

Query: 226 ENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTR 333
              R PIV TG   + +   L+ DG +   +W  TR
Sbjct: 118 ARERHPIVATGEFGADMQVSLVNDGPVT--FWLQTR 151
to top
>DTD_BURMA (Q62HB3) D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-)|
          Length = 152

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
 Frame = +1

Query: 64  GKMCCLFINDLDAGAGRMGG---TTQYTV---NNQMVNATLMNIADAPTNVQLPGMYNKE 225
           GKM  L +++LD GAGR GG    +Q+T+    N  +  +    A      +L   + + 
Sbjct: 60  GKMN-LPVSNLD-GAGRAGGLLLVSQFTLAADTNSGLRPSFTPAAPPDEGERLFDYFVRR 117

Query: 226 ENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTR 333
              R PIV TG   + +   L+ DG +   +W  TR
Sbjct: 118 ARERHPIVATGEFGADMQVSLVNDGPVT--FWLQTR 151
to top
>TERA_RAT (P46462) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 6/138 (4%)
 Frame = +1

Query: 37  REAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMY 216
           RE  D  ++   C LF ++LD+ A   GG                  AD   N  L  M 
Sbjct: 559 REIFDKARQAAPCVLFFDELDSIAKARGGNI----------GDGGGAADRVINQILTEMD 608

Query: 217 NKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDD--RIGVCKGIFQTDNVSD- 387
                  V I+   N    +   ++R GR+++  + P  D+  R+ + K   +   V+  
Sbjct: 609 GMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKD 668

Query: 388 ---ESVVKIVDTFPGQSI 432
              E + K+ + F G  +
Sbjct: 669 VDLEFLAKMTNGFSGADL 686
to top
>TERA_PIG (P03974) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 6/138 (4%)
 Frame = +1

Query: 37  REAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMY 216
           RE  D  ++   C LF ++LD+ A   GG                  AD   N  L  M 
Sbjct: 559 REIFDKARQAAPCVLFFDELDSIAKARGGNI----------GDGGGAADRVINQILTEMD 608

Query: 217 NKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDD--RIGVCKGIFQTDNVSD- 387
                  V I+   N    +   ++R GR+++  + P  D+  R+ + K   +   V+  
Sbjct: 609 GMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKD 668

Query: 388 ---ESVVKIVDTFPGQSI 432
              E + K+ + F G  +
Sbjct: 669 VDLEFLAKMTNGFSGADL 686
to top
>TERA_MOUSE (Q01853) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 6/138 (4%)
 Frame = +1

Query: 37  REAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMY 216
           RE  D  ++   C LF ++LD+ A   GG                  AD   N  L  M 
Sbjct: 559 REIFDKARQAAPCVLFFDELDSIAKARGGNI----------GDGGGAADRVINQILTEMD 608

Query: 217 NKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDD--RIGVCKGIFQTDNVSD- 387
                  V I+   N    +   ++R GR+++  + P  D+  R+ + K   +   V+  
Sbjct: 609 GMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKD 668

Query: 388 ---ESVVKIVDTFPGQSI 432
              E + K+ + F G  +
Sbjct: 669 VDLEFLAKMTNGFSGADL 686
to top
>TERA_HUMAN (P55072) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 6/138 (4%)
 Frame = +1

Query: 37  REAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMY 216
           RE  D  ++   C LF ++LD+ A   GG                  AD   N  L  M 
Sbjct: 559 REIFDKARQAAPCVLFFDELDSIAKARGGNI----------GDGGGAADRVINQILTEMD 608

Query: 217 NKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDD--RIGVCKGIFQTDNVSD- 387
                  V I+   N    +   ++R GR+++  + P  D+  R+ + K   +   V+  
Sbjct: 609 GMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKD 668

Query: 388 ---ESVVKIVDTFPGQSI 432
              E + K+ + F G  +
Sbjct: 669 VDLEFLAKMTNGFSGADL 686
to top
>EPHB6_RAT (P0C0K7) Ephrin type-B receptor 6 precursor (Tyrosine-protein|
           kinase-defective receptor EPH-6)
          Length = 1013

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
 Frame = -2

Query: 235 GGSPPCCTCQGAARWW---GHRRCSSGWRSPSGC*RCTAWFRPSY 110
           GGSPP   C G  RW    G  RC  G +   G   C A    SY
Sbjct: 272 GGSPPRLHCNGEGRWMVAVGGCRCQPGHQPARGDKLCQACPEGSY 316
to top
>YNEI_ECOLI (P76149) Aldehyde dehydrogenase-like protein yneI (EC 1.2.1.-)|
          Length = 462

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 486 PLAHLIVVHPSTQSTEKVNGLSWEGVDDLDDRLVTDIVGLED 361
           P  H I ++P+T   E+++ L W G DD+++ L     G  D
Sbjct: 5   PATHAISINPATG--EQLSVLPWAGADDIENALQLAAAGFRD 44
to top
>LEPA_HELPY (O25122) GTP-binding protein lepA|
          Length = 602

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 20/79 (25%), Positives = 37/79 (46%)
 Frame = +1

Query: 400 KIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVE 579
           KI+ T P  S DF   L+A +YD     ++G+         LV   DG +  EQ  + + 
Sbjct: 180 KIITTIPAPSGDFNAPLKALIYDSWFDNYLGALA-------LVRIMDGSINTEQEILVMG 232

Query: 580 KLLEYGHMLVQEQDNVKRV 636
              ++G + +   + +K++
Sbjct: 233 TGKKHGVLGLYYPNPLKKI 251
to top
>PSMR_ARCFU (O28303) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 398

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 4/121 (3%)
 Frame = +1

Query: 7   EXAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADA 186
           E A+L+R+ ++ A    K+     +FI++LDA A R   T   T  ++ V  T+M +   
Sbjct: 218 EGARLVREVFQLA----KEKAPSIIFIDELDAIAARR--TNSDTSGDREVQRTMMQLL-- 269

Query: 187 PTNVQLPGMYNKEENPRVPIVVTG--NDFSTLYAPLIRDGRMEKFYWA--PTRDDRIGVC 354
               +L G      +PR  + V G  N    L   ++R GR ++      PT + RI + 
Sbjct: 270 ---AELDGF-----DPRGDVKVIGATNRIDILDPAILRPGRFDRIIEVPLPTFEGRIQIF 321

Query: 355 K 357
           K
Sbjct: 322 K 322
to top
>CD48B_ARATH (Q9ZPR1) Cell division control protein 48 homolog B (AtCDC48b)|
          Length = 603

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 2/117 (1%)
 Frame = +1

Query: 7   EXAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADA 186
           E  K++R+ + EA+      K   +FI+++D    R     +  V       TLM+ ++ 
Sbjct: 99  ESEKVLREAFAEASSHAVSDKPSVIFIDEIDVLCPRRDARREQDVRIASQLFTLMD-SNK 157

Query: 187 PTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKF--YWAPTRDDRIGV 351
           P++            PRV +V + N    +   L R GR +       P  +DR+ +
Sbjct: 158 PSS----------SAPRVVVVASTNRVDAIDPALRRAGRFDALVEVSTPNEEDRLKI 204
to top
>EPHB6_MOUSE (O08644) Ephrin type-B receptor 6 precursor (Tyrosine-protein|
           kinase-defective receptor EPH-6) (MEP)
          Length = 1014

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
 Frame = -2

Query: 235 GGSPPCCTCQGAARWW---GHRRCSSGWRSPSGC*RCTAWFRPSY 110
           GGSPP   C G  RW    G  RC  G +   G   C A    SY
Sbjct: 273 GGSPPRLHCNGEGRWMVAVGGCRCQPGHQPARGDKLCQACPEGSY 317
to top
>YMEL1_MOUSE (O88967) ATP-dependent metalloprotease YME1L1 (EC 3.4.24.-)|
           (YME1-like protein 1) (ATP-dependent metalloprotease
           FtsH1)
          Length = 715

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 29/108 (26%), Positives = 42/108 (38%)
 Frame = +1

Query: 13  AKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPT 192
           A  IR  +REA    K    C +FI++LD+  G+   +  +  + Q +N  L        
Sbjct: 359 ASRIRNLFREA----KANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAE------ 408

Query: 193 NVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRD 336
                 M   + N  V I+   N    L   LIR GR +     P  D
Sbjct: 409 ------MDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPD 450
to top
>YMEL1_HUMAN (Q96TA2) ATP-dependent metalloprotease YME1L1 (EC 3.4.24.-)|
           (YME1-like protein 1) (ATP-dependent metalloprotease
           FtsH1) (Meg-4) (Presenilin-associated metalloprotease)
           (PAMP)
          Length = 773

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 29/108 (26%), Positives = 42/108 (38%)
 Frame = +1

Query: 13  AKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPT 192
           A  IR  +REA    K    C +FI++LD+  G+   +  +  + Q +N  L        
Sbjct: 417 ASRIRNLFREA----KANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAE------ 466

Query: 193 NVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRD 336
                 M   + N  V I+   N    L   LIR GR +     P  D
Sbjct: 467 ------MDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPD 508
to top
>RECA_CHLTE (O52393) Protein recA (Recombinase A)|
          Length = 346

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 13  AKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 150
           A+L+ Q  R+    I K    CLFIN L    G M G+ + T   +
Sbjct: 181 ARLMSQALRKLTGAISKSSSVCLFINQLRDKIGVMYGSPETTTGGK 226
to top
>GP116_HUMAN (Q8IZF2) Probable G-protein coupled receptor 116 precursor|
          Length = 1346

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 650 VSASCTRLTLSCSWTSMCPYSSSFSTVIFGCSKVT 546
           + +SC+R TL    T  CP  SS +TVI+ C  ++
Sbjct: 420 IDSSCSRYTLKADGTQ-CPSGSSGTTVIYTCEFIS 453
to top
>RECA_IDILO (Q5QUB8) Protein recA (Recombinase A)|
          Length = 372

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +1

Query: 13  AKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYT 138
           A+L+ Q  R+    IKK    C+FIN +    G M G  + T
Sbjct: 167 ARLMSQALRKLTSNIKKSNTMCIFINQIRMKIGVMFGNPETT 208
to top
>AFG31_MOUSE (Q920A7) AFG3-like protein 1 (EC 3.4.24.-)|
          Length = 663

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
 Frame = +1

Query: 31  RYREAADMIKKGKMCCLFINDLDA-----GAGRMGGTTQY--TVNNQMVNATLMNIADAP 189
           R R+   M +K   C LFI+++DA     G G +GG ++   T+N  +V    M+  ++ 
Sbjct: 254 RVRDMFAMARKHAPCILFIDEIDAIGRKRGRGHLGGQSEQENTLNQMLVE---MDGFNSS 310

Query: 190 TNV 198
           TNV
Sbjct: 311 TNV 313
to top
>PNPT1_MOUSE (Q8K1R3) Polyribonucleotide nucleotidyltransferase 1, mitochondrial|
           precursor (EC 2.7.7.8) (PNPase 1) (Polynucleotide
           phosphorylase-like protein) (PNPase old-35) (3'-5' RNA
           exonuclease OLD35)
          Length = 783

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 15/62 (24%)
 Frame = -3

Query: 399 DDRLVTDIVGLEDTLADTDTVVTG---------------GSPVELLHTTITDQRSVERRE 265
           D RL+TDI+G+ED   D D  + G               G P++++   I  Q SV ++E
Sbjct: 526 DYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGVPIKIIMEAI-QQASVAKKE 584

Query: 264 IV 259
           I+
Sbjct: 585 IL 586
to top
>PSMR_METAC (Q8TI88) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 421

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 27/97 (27%), Positives = 46/97 (47%)
 Frame = +1

Query: 37  REAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMY 216
           RE  +M +K     +FI++LD+ A R    T  T  ++ V  TLM +       ++ G +
Sbjct: 242 REIFEMARKKAPSIIFIDELDSIAARRLNET--TGADREVQRTLMQLL-----AEMDG-F 293

Query: 217 NKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAP 327
           +K +N R  I+   N    L   ++R GR ++    P
Sbjct: 294 DKRKNIR--IIAATNRPDVLDPAILRPGRFDRLVHVP 328
to top
>PSMR_METMA (Q8PY58) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 420

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 27/97 (27%), Positives = 46/97 (47%)
 Frame = +1

Query: 37  REAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMY 216
           RE  +M +K     +FI++LD+ A R    T  T  ++ V  TLM +       ++ G +
Sbjct: 242 REIFEMARKKAPSIIFIDELDSIAARRLNET--TGADREVQRTLMQLL-----AEMDG-F 293

Query: 217 NKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAP 327
           +K +N R  I+   N    L   ++R GR ++    P
Sbjct: 294 DKRKNIR--IIAATNRPDVLDPAILRPGRFDRLVHVP 328
to top
>LRC24_MOUSE (Q8BHA1) Leucine-rich repeat-containing protein 24 precursor|
          Length = 521

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 16/37 (43%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
 Frame = +1

Query: 484 WVGSTGIENIGKRLVNSRDGPVT-FEQPKMTVEKLLE 591
           W+GS  I+  G+RL++SRD  +T  E P++ ++ LLE
Sbjct: 222 WLGSW-IKEGGRRLLSSRDKKITCAEPPRLALQSLLE 257
to top
>FTSH_BACPF (P94304) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 679

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 5/99 (5%)
 Frame = +1

Query: 31  RYREAADMIKKGKMCCLFINDLDA-----GAGRMGGTTQYTVNNQMVNATLMNIADAPTN 195
           R R+  +  KK   C +FI+++DA     GAG  GG   +    Q +N  L         
Sbjct: 246 RVRDLFENAKKNAPCIIFIDEIDAVGRQRGAGLGGG---HDEREQTLNQLL--------- 293

Query: 196 VQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK 312
           V++ G      N  + I+   N    L   L+R GR ++
Sbjct: 294 VEMDGF---SANEGIIIIAATNRADILDPALLRPGRFDR 329
to top
>CD48D_ARATH (Q9SCN8) Putative cell division control protein 48 homolog D|
           (AtCDC48d) (Transitional endoplasmic reticulum ATPase D)
          Length = 815

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 6/138 (4%)
 Frame = +1

Query: 37  REAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMY 216
           RE  D  ++   C LF ++LD+ A + G +                 AD   N  L  M 
Sbjct: 564 REIFDKARQSAPCVLFFDELDSIATQRGNSV----------GDAGGAADRVLNQLLTEMD 613

Query: 217 NKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDD--RIGVCKGIFQTDNVSDE 390
                  V I+   N    +   L+R GR+++  + P  D+  R  + K   +   V+ +
Sbjct: 614 GMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRYQIFKSCLRKSPVAKD 673

Query: 391 ----SVVKIVDTFPGQSI 432
               ++ K    F G  I
Sbjct: 674 VDLRALAKYTQGFSGADI 691
to top
>RL3_RHOPA (P60456) 50S ribosomal protein L3 (RRP-L3)|
          Length = 241

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 37/159 (23%), Positives = 60/159 (37%), Gaps = 15/159 (9%)
 Frame = +1

Query: 106 AGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAP 285
           A ++G T  +T   + +  T++ +     N Q+ G   KE+N  V + V      T+Y P
Sbjct: 7   AQKVGMTRVFTEAGEHIPVTVLKLG----NCQVLGHRTKEKNGYVALQVGSGSRKTVYMP 62

Query: 286 LIRDGRMEKFYWAPTR--------DDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSID-- 435
               G+       P R        +D +       Q D+      V +  T  G+     
Sbjct: 63  KAERGQFAAAKVEPKRKVEEFRVSEDALLPVGAEIQADHFVVGQFVDVTGTSTGKGFAGG 122

Query: 436 ----FFGALRARVYDDEVRKWVGST-GIENIGKRLVNSR 537
                FG LRA        + +GST G ++ GK   N +
Sbjct: 123 MKRWNFGGLRATHGVSVSHRSIGSTGGRQDPGKTFKNKK 161
to top
>FTSH_RICPR (Q9ZEA2) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 637

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 5/99 (5%)
 Frame = +1

Query: 31  RYREAADMIKKGKMCCLFINDLDA-----GAGRMGGTTQYTVNNQMVNATLMNIADAPTN 195
           R R+  +  K+   C +FI+++DA     G G  GG  +     Q +N  L         
Sbjct: 235 RVRDMFEQGKRNAPCIIFIDEIDAVGRHRGIGMGGGNDE---REQTLNQML--------- 282

Query: 196 VQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK 312
           V++ G    E N  V I+   N    L   L+R GR ++
Sbjct: 283 VEMDGF---EANEGVVIIAATNRPDVLDRALLRPGRFDR 318
to top
>FTSH_RICCN (Q92JJ9) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 637

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 5/99 (5%)
 Frame = +1

Query: 31  RYREAADMIKKGKMCCLFINDLDA-----GAGRMGGTTQYTVNNQMVNATLMNIADAPTN 195
           R R+  +  K+   C +FI+++DA     G G  GG  +     Q +N  L         
Sbjct: 235 RVRDMFEQGKRNAPCIIFIDEIDAVGRHRGIGMGGGNDE---REQTLNQML--------- 282

Query: 196 VQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK 312
           V++ G    E N  V I+   N    L   L+R GR ++
Sbjct: 283 VEMDGF---EANEGVVIIAATNRPDVLDRALLRPGRFDR 318
to top
>FTSH_BACSU (P37476) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 637

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 5/99 (5%)
 Frame = +1

Query: 31  RYREAADMIKKGKMCCLFINDLDA-----GAGRMGGTTQYTVNNQMVNATLMNIADAPTN 195
           R R+  +  KK   C +FI+++DA     GAG  GG   +    Q +N  L         
Sbjct: 241 RVRDLFENAKKNAPCLIFIDEIDAVGRQRGAGLGGG---HDEREQTLNQLL--------- 288

Query: 196 VQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEK 312
           V++ G      N  + I+   N    L   L+R GR ++
Sbjct: 289 VEMDGF---SANEGIIIIAATNRADILDPALLRPGRFDR 324
to top
>PNPT1_PONPY (Q5RCW2) Polyribonucleotide nucleotidyltransferase 1, mitochondrial|
           precursor (EC 2.7.7.8) (PNPase 1)
          Length = 783

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 15/62 (24%)
 Frame = -3

Query: 399 DDRLVTDIVGLEDTLADTDTVVTG---------------GSPVELLHTTITDQRSVERRE 265
           D RL+TDI+G+ED   D D  + G               G P++++   I  Q SV ++E
Sbjct: 526 DYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAI-QQASVAKKE 584

Query: 264 IV 259
           I+
Sbjct: 585 IL 586
to top
>PNPT1_HUMAN (Q8TCS8) Polyribonucleotide nucleotidyltransferase 1, mitochondrial|
           precursor (EC 2.7.7.8) (PNPase 1) (Polynucleotide
           phosphorylase-like protein) (PNPase old-35) (3'-5' RNA
           exonuclease OLD35)
          Length = 783

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 15/62 (24%)
 Frame = -3

Query: 399 DDRLVTDIVGLEDTLADTDTVVTG---------------GSPVELLHTTITDQRSVERRE 265
           D RL+TDI+G+ED   D D  + G               G P++++   I  Q SV ++E
Sbjct: 526 DYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAI-QQASVAKKE 584

Query: 264 IV 259
           I+
Sbjct: 585 IL 586
to top
>CDC48_CAPAN (Q96372) Cell division cycle protein 48 homolog|
          Length = 805

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 24/101 (23%), Positives = 40/101 (39%)
 Frame = +1

Query: 37  REAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMY 216
           RE  D  ++   C LF ++LD+ A + G +          +      AD   N  L  M 
Sbjct: 564 REIFDKARQSAPCVLFFDELDSIATQRGSS----------SGDAGGAADRVLNQLLTEMD 613

Query: 217 NKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDD 339
                  V I+   N    +   L+R GR+++  + P  D+
Sbjct: 614 GMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDE 654


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,516,750
Number of Sequences: 219361
Number of extensions: 1978025
Number of successful extensions: 6703
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 6377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6694
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6370891296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top