>SL9A4_RAT (P26434) Sodium/hydrogen exchanger 4 (Na(+)/H(+) exchanger 4)|
           (NHE-4) (Solute carrier family 9 member 4)
          Length = 717

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 338 PTPTPQNGSRGSRTGRPSTKTCCWIVH 258
           P   PQ   RG+R    +   CCW++H
Sbjct: 662 PYSNPQPARRGARAAESTGNPCCWLLH 688

>PALH_EMENI (Q9P904) pH-response regulator protein palH/RIM21|
          Length = 760

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
 Frame = -3

Query: 428 R*SKATKNRRKAPIYQGIAAKKNPSKNKAQPTPTPQNGSRGSRTGRPSTKTCCWIVH--- 258
           R  + T+ +R+A   +G  A K+  +  A+PTP P   +  SR    S  +  + VH   
Sbjct: 423 RGGRITQTQREA---EGATAAKSRKRRSARPTPPPAAVTPVSRADTTSAASTVYNVHYYP 479

Query: 257 GKATTP*ALRPFRE 216
             + TP    PF E
Sbjct: 480 VSSPTPPVAMPFME 493

>MDC1_HUMAN (Q14676) Mediator of DNA damage checkpoint protein 1 (Nuclear factor|
            with BRCT domains 1)
          Length = 2089

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -3

Query: 419  KATKNRRKAPIYQGIAAKK-NPSKNKAQP-TPTPQNGSRGSRTGRPSTKT 276
            +  K+ R  P     AA + +PS + AQP TP P + +  SRT R S KT
Sbjct: 1108 RTRKSSRMTPFPATSAAPEPHPSTSTAQPVTPKPTSQATRSRTNRSSVKT 1157

>CENPF_HUMAN (P49454) CENP-F kinetochore protein (Centromere protein F) (Mitosin)|
            (AH antigen)
          Length = 3210

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
 Frame = -2

Query: 453  AGNQSRLLPVIQSNKE*KKSTNIPGN-------CSQEEP**EQSPADPDAAEWQPRLPDW 295
            AG    LL  I+S+K+  K   +  +       C  ++   ++     + AE+Q RL + 
Sbjct: 2743 AGELQLLLEEIKSSKDQLKELTLENSELKKSLDCMHKDQVEKEGKVREEIAEYQLRLHEA 2802

Query: 294  EALHQDLLLDSARE 253
            E  HQ LLLD+ ++
Sbjct: 2803 EKKHQALLLDTNKQ 2816

>MDC1_MACMU (Q5TM68) Mediator of DNA damage checkpoint protein 1|
          Length = 2173

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -3

Query: 410  KNRRKAPIYQGIAAKK-NPSKNKAQP-TPTPQNGSRGSRTGRPSTKT 276
            K+ R  P     AA + +PS + AQP TP P + +  SRT R S KT
Sbjct: 1113 KSSRMTPFPATSAAPEPHPSTSTAQPVTPKPTSQATRSRTNRSSVKT 1159

>MDC1_PANTR (Q7YR40) Mediator of DNA damage checkpoint protein 1|
          Length = 2171

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 374  AAKKNPSKNKAQP-TPTPQNGSRGSRTGRPSTKT 276
            A + +PS + AQP TP P + +  SRT R S KT
Sbjct: 1124 APEPHPSTSTAQPVTPKPTSQATRSRTNRSSVKT 1157

>H1_PARAN (P02256) Histone H1, gonadal|
          Length = 248

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -3

Query: 419 KATKNRRKAPIYQGIAAKKNPSKNKAQPTPTPQNGSRGSRTGRPSTK 279
           KA K  +K+P      AKK+P K KA+ +P     + G R  +P+ K
Sbjct: 184 KAKKPAKKSPKKAKKPAKKSPKKKKAKRSPKKAKKAAGKR--KPAAK 228

>BAZ2A_HUMAN (Q9UIF9) Bromodomain adjacent to zinc finger domain 2A (Transcription|
            termination factor I-interacting protein 5)
            (TTF-I-interacting protein 5) (Tip5) (hWALp3)
          Length = 1878

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -3

Query: 359  PSKNKAQPTPTPQNGSRGSRTGRPSTKTCCWIVHGKATTP*ALRPFR 219
            P+ ++ QPTP+PQ  +      RPS    C  V   +T    L P R
Sbjct: 1313 PAVSEDQPTPSPQQLASSKPMNRPSAANPCSPVQFSSTPLAGLAPKR 1359

>COBA1_MOUSE (Q61245) Collagen alpha-1(XI) chain precursor|
          Length = 1804

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -3

Query: 383 QGIAAKKNPSKNKAQPTPTPQNGSRGSR--TGRPSTK 279
           +GIA K  P   + Q  PT   GSRG+R  TG+P  K
Sbjct: 868 RGIAGKPGP---RGQRGPTGPRGSRGARGPTGKPGPK 901

>H5B_XENLA (P22845) Histone H5B (XLH5B) (H1E) (H1-SB)|
          Length = 194

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 428 R*SKATKNRRKAPIYQGIAAKKNPSKNKAQPTP 330
           R +K TK  R  P++   A K  PSK KA+ +P
Sbjct: 155 RKAKKTKTVRAKPVWASKAKKAKPSKPKAKASP 187


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,175,369
Number of Sequences: 219361
Number of extensions: 794572
Number of successful extensions: 3507
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3502
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)