ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal30h11 |
|---|---|
| Clone Library Name | barley_pub |
>ATG9A_PONPY (Q5RCS0) Autophagy-related protein 9A (APG9-like 1)| Length = 839 Score = 35.0 bits (79), Expect = 0.19 Identities = 25/88 (28%), Positives = 35/88 (39%) Frame = +3 Query: 51 VGDIASHVQHEIQYGGDNPLASPRSQYASQSTQATVHMPNTSSQQPSASLFALGNPGLTQ 230 VGD S Q +++ G P+ A Q+ + + S FA+ NPG Sbjct: 515 VGDTCSFAQMDVRQHGH-----PQWLSAGQTEASVYQQAEDGKTELSLMHFAITNPGWQP 569 Query: 231 PKNSAVFSNALSSPVRRGLQPYHLDQGG 314 P+ S F L V+R L QGG Sbjct: 570 PRESTAFLGFLKEQVQRDGAAASLAQGG 597
>ATG9A_HUMAN (Q7Z3C6) Autophagy-related protein 9A (APG9-like 1)| Length = 839 Score = 35.0 bits (79), Expect = 0.19 Identities = 25/88 (28%), Positives = 35/88 (39%) Frame = +3 Query: 51 VGDIASHVQHEIQYGGDNPLASPRSQYASQSTQATVHMPNTSSQQPSASLFALGNPGLTQ 230 VGD S Q +++ G P+ A Q+ + + S FA+ NPG Sbjct: 515 VGDTCSFAQMDVRQHGH-----PQWLSAGQTEASVYQQAEDGKTELSLMHFAITNPGWQP 569 Query: 231 PKNSAVFSNALSSPVRRGLQPYHLDQGG 314 P+ S F L V+R L QGG Sbjct: 570 PRESTAFLGFLKEQVQRDGAAASLAQGG 597
>ATG9A_RAT (Q5FWU3) Autophagy-related protein 9A (APG9-like 1)| Length = 839 Score = 33.1 bits (74), Expect = 0.73 Identities = 24/88 (27%), Positives = 34/88 (38%) Frame = +3 Query: 51 VGDIASHVQHEIQYGGDNPLASPRSQYASQSTQATVHMPNTSSQQPSASLFALGNPGLTQ 230 VGD S Q +++ G P+ Q+ + + S FA+ NPG Sbjct: 515 VGDTCSFAQMDVRQHGH-----PQWLSGGQTEASVYQQAEDGKTELSLMHFAITNPGWQP 569 Query: 231 PKNSAVFSNALSSPVRRGLQPYHLDQGG 314 P+ S F L V+R L QGG Sbjct: 570 PRESTAFLGFLKEQVQRDGAAAGLAQGG 597
>ATG9A_BOVIN (Q3T904) Autophagy-related protein 9A (APG9-like 1) (Autophagy| protein 9) Length = 839 Score = 33.1 bits (74), Expect = 0.73 Identities = 24/88 (27%), Positives = 34/88 (38%) Frame = +3 Query: 51 VGDIASHVQHEIQYGGDNPLASPRSQYASQSTQATVHMPNTSSQQPSASLFALGNPGLTQ 230 VGD S Q +++ G P+ Q+ + + S FA+ NPG Sbjct: 515 VGDTCSFAQMDVRQHGH-----PQWLSGGQTEASVYQQAEDGKTELSLMHFAITNPGWQP 569 Query: 231 PKNSAVFSNALSSPVRRGLQPYHLDQGG 314 P+ S F L V+R L QGG Sbjct: 570 PRESTAFLGFLKEQVQRDGAAAGLAQGG 597
>AXN2_RAT (O70240) Axin-2 (Axis inhibition protein 2) (Conductin) (Axin-like| protein) (Axil) Length = 838 Score = 32.3 bits (72), Expect = 1.2 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%) Frame = +1 Query: 388 CIRTAQLTTPPEQ-CCYTEMEEQHAHPVKGQTGRTAY 495 C R A+++ P +Q CC + HP GQ G T++ Sbjct: 696 CRRLAEVSKPQKQRCCVASQQRDRNHPATGQAGPTSF 732
>HGS_MOUSE (Q99LI8) Hepatocyte growth factor-regulated tyrosine kinase| substrate Length = 775 Score = 32.0 bits (71), Expect = 1.6 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 8/74 (10%) Frame = +3 Query: 105 PLASPRSQYASQSTQATVHMPNTSSQQPS--------ASLFALGNPGLTQPKNSAVFSNA 260 P +P +Q A Q+ P SS QP+ AS P ++QP ++ Sbjct: 636 PTGAPGAQAAPQAQAGPTTSPAYSSYQPTPTPGYQSVASQAPQSLPAISQPPQTSNIGYM 695 Query: 261 LSSPVRRGLQPYHL 302 S P+ G QPY++ Sbjct: 696 GSQPMSMGYQPYNM 709
>TOP6B_PYRAE (Q8ZVM0) Type II DNA topoisomerase VI subunit B (EC 5.99.1.3)| (TopoVI-B) Length = 527 Score = 32.0 bits (71), Expect = 1.6 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Frame = -3 Query: 255 WKRPPSSWAASTLGFLVQISSQMVAGC-LCWAYAR*PECFGLHIVILE 115 W+RP S W + L++I ++ + G +A R PE +G H I+E Sbjct: 301 WRRPRSDWLSPAGAELLEIGAKAILGAEAVFAITRKPESYGGHPFIVE 348
>HGS_HUMAN (O14964) Hepatocyte growth factor-regulated tyrosine kinase| substrate (Protein pp110) (Hrs) Length = 777 Score = 32.0 bits (71), Expect = 1.6 Identities = 21/66 (31%), Positives = 29/66 (43%) Frame = +3 Query: 105 PLASPRSQYASQSTQATVHMPNTSSQQPSASLFALGNPGLTQPKNSAVFSNALSSPVRRG 284 P ASP Y+S T N +SQ P + P ++QP S+ S V G Sbjct: 654 PTASPA--YSSYQPTPTAGYQNVASQAPQSL------PAISQPPQSSTMGYMGSQSVSMG 705 Query: 285 LQPYHL 302 QPY++ Sbjct: 706 YQPYNM 711
>UBQL1_RAT (Q9JJP9) Ubiquilin-1 (Protein linking IAP with cytoskeleton 1)| (PLIC-1) Length = 582 Score = 31.6 bits (70), Expect = 2.1 Identities = 34/107 (31%), Positives = 46/107 (42%), Gaps = 8/107 (7%) Frame = +3 Query: 33 NGLRLTVGDIASHVQH--EIQYGGDNPLAS----PRSQYASQS--TQATVHMPNTSSQQP 188 N LR DI + + + Q+GG NP AS P S +Q T+ +PN + Q Sbjct: 261 NALRRMYTDIQEPMLNAAQEQFGG-NPFASLVSSPSSAEGTQPSRTENRDPLPNPWAPQT 319 Query: 189 SASLFALGNPGLTQPKNSAVFSNALSSPVRRGLQPYHLDQGGDAGYF 329 S A G+ G T S NA S+P +G +L G A F Sbjct: 320 PQSSPASGSTGSTTNTVSTSAGNATSTPAGQGTSGPNLVPGAGASMF 366
>HGS_RAT (Q9JJ50) Hepatocyte growth factor-regulated tyrosine kinase| substrate (SNAP-25-interacting protein Hrs-2) Length = 776 Score = 31.6 bits (70), Expect = 2.1 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 8/74 (10%) Frame = +3 Query: 105 PLASPRSQYASQSTQATVHMPNTSSQQPS--------ASLFALGNPGLTQPKNSAVFSNA 260 P +P +Q A Q+ P SS QP+ AS P ++QP ++ Sbjct: 637 PAGAPGAQAAPQAQAGPTTNPAYSSYQPTPTPGYQNVASQAPQSLPAISQPPQTSNIGYM 696 Query: 261 LSSPVRRGLQPYHL 302 S P+ G QPY++ Sbjct: 697 GSQPMSMGYQPYNM 710
>AXN2_HUMAN (Q9Y2T1) Axin-2 (Axis inhibition protein 2) (Conductin) (Axin-like| protein) (Axil) Length = 843 Score = 30.4 bits (67), Expect = 4.7 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%) Frame = +1 Query: 388 CIRTAQLTTPPEQ-CCYTEMEEQHAHPVKGQTGRTAY 495 C R A+++ PP+Q CC + H QTG T + Sbjct: 701 CRRLAEVSKPPKQRCCVASQQRDRNHSATVQTGATPF 737
>RX_HUMAN (Q9Y2V3) Retinal homeobox protein Rx (Retina and anterior neural| fold homeobox protein) Length = 346 Score = 30.4 bits (67), Expect = 4.7 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Frame = +2 Query: 263 IQPRAPGPATIPSGSGWGCRLLCERLGPRAESHGFKRL---IHGHAFGQP 403 +QP AP P + P G G+G + + PR S RL H A G+P Sbjct: 293 LQPLAPPPPSYPCGPGFGDKFPLDEADPRNSSIAALRLKAKEHIQAIGKP 342
>NCOA1_MOUSE (P70365) Nuclear receptor coactivator 1 (EC 2.3.1.48) (NCoA-1)| (Steroid receptor coactivator 1) (SRC-1) (Nuclear receptor coactivator protein 1) (mNRC-1) Length = 1447 Score = 30.4 bits (67), Expect = 4.7 Identities = 17/43 (39%), Positives = 25/43 (58%) Frame = -2 Query: 523 SRGQFFLSLDMLFFQFVPSLDVHAVLPSLCSSTAQEES*AGLS 395 S+ QF LD F Q +P+L+ A LPSLC + + + G+S Sbjct: 809 SQSQFTADLDQ-FDQLLPTLEKAAQLPSLCETDRMDGAVTGVS 850
>K1HB_HUMAN (Q14525) Keratin, type I cuticular Ha3-II (Hair keratin, type I| Ha3-II) Length = 404 Score = 30.4 bits (67), Expect = 4.7 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%) Frame = +3 Query: 39 LRLTVG--DIASHVQHEIQYGGDNPLASPRSQYASQSTQATVHMPNTSSQ 182 LR TV +I QH ++Y +N L ++Y+SQ +Q + N SQ Sbjct: 275 LRRTVNALEIELQAQHNLRYSLENTLTESEARYSSQLSQVQSLITNVESQ 324
>ZBT34_HUMAN (Q8NCN2) Zinc finger and BTB domain-containing protein 34| Length = 500 Score = 30.0 bits (66), Expect = 6.2 Identities = 31/110 (28%), Positives = 43/110 (39%) Frame = +3 Query: 30 ENGLRLTVGDIASHVQHEIQYGGDNPLASPRSQYASQSTQATVHMPNTSSQQPSASLFAL 209 E + + VG S +QH Y SQ ASQ T + + S+ PS S+ + Sbjct: 265 EQVVAVNVGSYGSVLQHAYSY----------SQAASQPTNVSEAFGSLSNSSPSRSMLSC 314 Query: 210 GNPGLTQPKNSAVFSNALSSPVRRGLQPYHLDQGGDAGYFANGLAREPNP 359 G + K ALS + LQ L QG D+ N E +P Sbjct: 315 FRGGRARQK------RALSVHLHSDLQ--GLVQGSDSEAMMNNPGYESSP 356
>JIP3_HUMAN (Q9UPT6) C-jun-amino-terminal kinase-interacting protein 3| (JNK-interacting protein 3) (JIP-3) (JNK MAP kinase scaffold protein 3) (Mitogen-activated protein kinase 8-interacting protein 3) Length = 1334 Score = 30.0 bits (66), Expect = 6.2 Identities = 13/41 (31%), Positives = 16/41 (39%) Frame = -3 Query: 354 SARGPSRSQSSLHPHPDPDGMVAGPGARGWIVRWKRPPSSW 232 S GP SS P P+P G G G+ W + W Sbjct: 937 SENGPEPDSSSTRPEPEPSGDPTGAGSSAAPTMWLGAQNGW 977
>ADRB3_RAT (P26255) Beta-3 adrenergic receptor (Beta-3 adrenoceptor) (Beta-3| adrenoreceptor) Length = 400 Score = 30.0 bits (66), Expect = 6.2 Identities = 40/146 (27%), Positives = 56/146 (38%), Gaps = 9/146 (6%) Frame = -3 Query: 576 WRVGVKLNSPT*SVTTSHLAASSFFHWICCSSSLSLHW--MCMLFFHLCVAALLRRSREL 403 WRVG + + +S + SSS+S + + MLF + V + +R R L Sbjct: 175 WRVGADAEAQECHSNPRCCSFASNMPYALLSSSVSFYLPLLVMLFVYARVFVVAKRQRRL 234 Query: 402 GCPNACPWMSRLKPWDSARGPSRSQSSLHPHPDPDGMVAGPGARGWIVRWKRPPSSW--- 232 + R P +S R PSRS P P V P A + R P+ Sbjct: 235 LRRE----LGRFPPEESPRSPSRS-------PSP-ATVGTPTASDGVPSCGRRPARLLPL 282 Query: 231 ----AASTLGFLVQISSQMVAGCLCW 166 A TLG ++ I S LCW Sbjct: 283 GEHRALRTLGLIMGIFS------LCW 302 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 104,185,444 Number of Sequences: 219361 Number of extensions: 2407931 Number of successful extensions: 7396 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 6999 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7393 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6086476506 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
