Clone Information

BLAST Search Result

Clone Name	baal30h11
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	emb\|AJ234562.1\|HVU234562 Hordeum vulgare genomic DNA fragment; c...	854	0.0
2	emb\|AJ234450.1\|HVU234450 Hordeum vulgare partial mRNA; clone cMW...	837	0.0
3	ref\|XM_450593.1\| Oryza sativa (japonica cultivar-group), mRNA	339	7e-90
4	dbj\|AK071395.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	339	7e-90
5	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	238	2e-59
6	dbj\|AP005508.3\| Oryza sativa (japonica cultivar-group) genomic D...	238	2e-59
7	gb\|AY107736.1\| Zea mays PCO090313 mRNA sequence	224	3e-55
8	gb\|BT018115.1\| Zea mays clone EL01N0553H03.c mRNA sequence	196	6e-47
9	ref\|XM_482242.1\| Oryza sativa (japonica cultivar-group), mRNA	70	1e-08
10	ref\|XM_507223.1\| PREDICTED Oryza sativa (japonica cultivar-group...	70	1e-08
11	ref\|XM_507222.1\| PREDICTED Oryza sativa (japonica cultivar-group...	70	1e-08
12	dbj\|AK109817.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	70	1e-08
13	dbj\|AK098973.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	70	1e-08
14	dbj\|AK060114.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	70	1e-08
15	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	46	0.14
16	dbj\|AP003947.3\| Oryza sativa (japonica cultivar-group) genomic D...	46	0.14
17	gb\|AC006552.7\|AC006552 Homo sapiens chromosome 4 clone C0084L10 ...	46	0.14
18	gb\|AC122789.8\| Mus musculus chromosome 5, clone RP24-258A20, com...	40	8.8
19	gb\|AC168091.3\| Mus musculus BAC clone RP23-163F18 from chromosom...	40	8.8
20	gb\|AC137942.6\| Mus musculus chromosome 10, clone RP24-502K6, com...	40	8.8
21	emb\|BX548019.36\| Zebrafish DNA sequence from clone DKEY-20D1 in ...	40	8.8
22	gb\|AC131723.1\| Mus musculus BAC clone RP23-144E24 from 1, comple...	40	8.8
23	gb\|CP000272.1\| Burkholderia xenovorans LB400 chromosome 3, compl...	40	8.8
24	emb\|AL159151.56\| Human DNA sequence from clone RP11-156O2 on chr...	40	8.8
25	emb\|AL135793.13\| Human DNA sequence from clone RP11-296H2 on chr...	40	8.8
26	gb\|AC016919.15\| Homo sapiens 3 BAC RP11-220J13 (Roswell Park Can...	40	8.8
27	emb\|X58831.1\|CSGDHANC C.sorokiniana gdhANC gene for NADP-specifi...	40	8.8
28	gb\|AC164315.2\| Mus musculus BAC clone RP23-18J12 from chromosome...	40	8.8
29	gb\|AC148763.14\| Medicago truncatula clone mth2-29o24, complete s...	40	8.8
30	gb\|AC022039.7\| Homo sapiens chromosome 8, clone RP11-3G21, compl...	40	8.8
31	gb\|AC022150.6\| Homo sapiens chromosome 19 clone CTD-3099C6, comp...	40	8.8
32	emb\|BX571699.10\| Zebrafish DNA sequence from clone DKEYP-116G9 i...	40	8.8
33	gb\|AC009898.6\| Homo sapiens chromosome 8, clone RP11-138H14, com...	40	8.8
34	gb\|AC092405.2\| Papio anubis clone RP41-170F23, complete sequence	40	8.8
35	emb\|BX004878.8\| Zebrafish DNA sequence from clone DKEY-11H2 in l...	40	8.8
36	dbj\|AP001303.1\| Arabidopsis thaliana genomic DNA, chromosome 3, ...	40	8.8
37	emb\|BX294008.8\| Mouse DNA sequence from clone RP23-28K9 on chrom...	40	8.8
38	emb\|AL929457.12\| Zebrafish DNA sequence from clone CH211-153I8 i...	40	8.8
39	emb\|BX510330.20\| Zebrafish DNA sequence from clone DKEYP-82B3 in...	40	8.8
40	gb\|AC153964.3\| Mus musculus 10 BAC RP24-399H20 (Roswell Park Can...	40	8.8

>emb|AJ234562.1|HVU234562 Hordeum vulgare genomic DNA fragment; clone MWG0803
          Length = 598

 Score =  854 bits (431), Expect = 0.0
 Identities = 438/439 (99%), Gaps = 1/439 (0%)
 Strand = Plus / Plus

                                                                       
Query: 209 aggaaacccagggttgacgcagcccaagaactcggcggtcttttccaacgcactatccag 268
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9   aggaaacccagggttgacgcagcccaagaactcggcggtcttttccaacgcactatccag 68

                                                                       
Query: 269 ccccgtgcgccggggcctgcaaccataccatctggatcagggtggggatgcaggctactt 328
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  ccccgtgcgccggggcctgcaaccataccatctggatcagggtggggatgcaggctactt 128

                                                                       
Query: 329 tgcgaacggcttggcccgcgagccgaatcccacggcttcaaacgactcatccatggacat 388
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tgcgaacggcttggcccgcgagccgaatcccacggcttcaaacgactcatccatggacat 188

                                                                       
Query: 389 gcattcggacagcccagctcacgactcctcctgagcagtgctgctacacagagatggaag 448
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 gcattcggacagcccagctcacgactcctcctgagcagtgctgctacacagagatggaag 248

                                                                       
Query: 449 aacagcatgcacatccagtgaagggacaaactggaagaacagcatatccagtgaaagaaa 508
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 aacagcatgcacatccagtgaagggacaaactggaagaacagcatatccagtgaaagaaa 308

                                                                       
Query: 509 gaactggccgcgagatggcttgtcgtcaccgatcaagtaggactattcaatttaaccccc 568
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gaactggccgcgagatggc-tgtcgtcaccgatcaagtaggactattcaatttaaccccc 367

                                                                       
Query: 569 accctccatagcctgttatatgctataagcaatgtcttatgtttgtcactcctctcctgc 628
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 accctccatagcctgttatatgctataagcaatgtcttatgtttgtcactcctctcctgc 427

                              
Query: 629 ttagtctgttgctttgtca 647
           |||||||||||||||||||
Sbjct: 428 ttagtctgttgctttgtca 446

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>emb|AJ234450.1|HVU234450 Hordeum vulgare partial mRNA; clone cMWG0770
          Length = 594

 Score =  837 bits (422), Expect = 0.0
 Identities = 436/440 (99%), Gaps = 1/440 (0%)
 Strand = Plus / Plus

                                                                       
Query: 209 aggaaacccagggttgacgcagcccaagaactcggcggtcttttccaacgcactatccag 268
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3   aggaaacccagggttgacgcagcccaagaactcggcggtcttttccaacgcactatccag 62

                                                                       
Query: 269 ccccgtgcgccggggcctgcaaccataccatctggatcagggtggggatgcaggctactt 328
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  ccccgtgcgccggggcctgcaaccataccatctggatcagggtggggatgcaggctactt 122

                                                                       
Query: 329 tgcgaacggcttggcccgcgagccgaatcccacggcttcaaacgactcatccatggacat 388
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 tgcgaacggcttggcccgcgagccgaatcccacggcttcaaacgactcatccatggacat 182

                                                                       
Query: 389 gcattcggacagcccagctcacgactcctcctgagcagtgctgctacacagagatggaag 448
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 gcattcggacagcccagctcacgactcctcctgagcagtgctgctacacagagatggaag 242

                                                                       
Query: 449 aacagcatgcacatccagtgaagggacaaactggaagaacagcatatccagtg-aaagaa 507
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 243 aacagcatgcacatccagtgaagggacaaactggaagmacagcatatccagtgaaaagaa 302

                                                                       
Query: 508 agaactggccgcgagatggcttgtcgtcaccgatcaagtaggactattcaatttaacccc 567
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 303 agaactggccgcgagatggctgttcgtcaccgatcaagtaggactattcaatttaacccc 362

                                                                       
Query: 568 caccctccatagcctgttatatgctataagcaatgtcttatgtttgtcactcctctcctg 627
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 caccctccatagcctgttatatgctataagcaatgtcttatgtttgtcactcctctcctg 422

                               
Query: 628 cttagtctgttgctttgtca 647
           ||||||||||||||||||||
Sbjct: 423 cttagtctgttgctttgtca 442

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>ref|XM_450593.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1102

 Score =  339 bits (171), Expect = 7e-90
 Identities = 354/415 (85%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctgtatgaatggatcttaagacagcatgaaaatggcttgaggctgacagtgggtgata 60
           |||| |||||||||||||| || ||||||||||||||||||||||||||||| | |||||
Sbjct: 357 agctctatgaatggatcttgaggcagcatgaaaatggcttgaggctgacagttgctgata 416

                                                                       
Query: 61  tagcctcgcacgtccagcatgagattcagtatggaggcgacaatccgttggcctctccaa 120
           ||||||||||| ||||||| ||||| ||||||||||| |||||| | |  ||||||||||
Sbjct: 417 tagcctcgcacatccagcacgagatccagtatggaggtgacaatgcatcagcctctccaa 476

                                                                       
Query: 121 gatcacaatatgcaagccaaagcactcaggctaccgtgcatatgcccaacacaagcagcc 180
           |||||||  ||||||||||||||||||| ||||| |||| ||| ||||||||||  ||||
Sbjct: 477 gatcacagcatgcaagccaaagcactcaagctacagtgcctattcccaacacaatgagcc 536

                                                                       
Query: 181 agcaaccatctgcgagcttatttgcactaggaaacccagggttgacgcagcccaagaact 240
           |||| |||||  | | ||||||||| ||||||||  |||| |||  |||| |||||||||
Sbjct: 537 agcagccatcaccaaacttatttgcgctaggaaatacaggattggtgcagtccaagaact 596

                                                                       
Query: 241 cggcggtcttttccaacgcactatccagccccgtgcgccggggcctgcaaccataccatc 300
           | ||||||||||| || |||||||| |||||||| |||||| |||||||||||| ||| |
Sbjct: 597 cagcggtcttttcaaatgcactatctagccccgttcgccggagcctgcaaccattccacc 656

                                                                       
Query: 301 tggatcagggtggggatgcaggctactttgcgaacggcttggcccgcgagccgaatccca 360
           |||| |||||||| ||||| || ||||| || |||||| |   |||||| |  ||  | |
Sbjct: 657 tggagcagggtggcgatgcggggtacttcgcaaacggcgttaaccgcgatcaaaactcga 716

                                                                  
Query: 361 cggcttcaaacgactcatccatggacatgcattcggacagcccagctcacgactc 415
           ||||||| ||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct: 717 cggcttcgaacgattcatccatggacatgcattcagacagcccagctcatgactc 771



 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 545 gtaggactattcaatttaaccccc 568
           ||||||||||||||||||||||||
Sbjct: 858 gtaggactattcaatttaaccccc 881

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>dbj|AK071395.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023095O09, full
           insert sequence
          Length = 1102

 Score =  339 bits (171), Expect = 7e-90
 Identities = 354/415 (85%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctgtatgaatggatcttaagacagcatgaaaatggcttgaggctgacagtgggtgata 60
           |||| |||||||||||||| || ||||||||||||||||||||||||||||| | |||||
Sbjct: 357 agctctatgaatggatcttgaggcagcatgaaaatggcttgaggctgacagttgctgata 416

                                                                       
Query: 61  tagcctcgcacgtccagcatgagattcagtatggaggcgacaatccgttggcctctccaa 120
           ||||||||||| ||||||| ||||| ||||||||||| |||||| | |  ||||||||||
Sbjct: 417 tagcctcgcacatccagcacgagatccagtatggaggtgacaatgcatcagcctctccaa 476

                                                                       
Query: 121 gatcacaatatgcaagccaaagcactcaggctaccgtgcatatgcccaacacaagcagcc 180
           |||||||  ||||||||||||||||||| ||||| |||| ||| ||||||||||  ||||
Sbjct: 477 gatcacagcatgcaagccaaagcactcaagctacagtgcctattcccaacacaatgagcc 536

                                                                       
Query: 181 agcaaccatctgcgagcttatttgcactaggaaacccagggttgacgcagcccaagaact 240
           |||| |||||  | | ||||||||| ||||||||  |||| |||  |||| |||||||||
Sbjct: 537 agcagccatcaccaaacttatttgcgctaggaaatacaggattggtgcagtccaagaact 596

                                                                       
Query: 241 cggcggtcttttccaacgcactatccagccccgtgcgccggggcctgcaaccataccatc 300
           | ||||||||||| || |||||||| |||||||| |||||| |||||||||||| ||| |
Sbjct: 597 cagcggtcttttcaaatgcactatctagccccgttcgccggagcctgcaaccattccacc 656

                                                                       
Query: 301 tggatcagggtggggatgcaggctactttgcgaacggcttggcccgcgagccgaatccca 360
           |||| |||||||| ||||| || ||||| || |||||| |   |||||| |  ||  | |
Sbjct: 657 tggagcagggtggcgatgcggggtacttcgcaaacggcgttaaccgcgatcaaaactcga 716

                                                                  
Query: 361 cggcttcaaacgactcatccatggacatgcattcggacagcccagctcacgactc 415
           ||||||| ||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct: 717 cggcttcgaacgattcatccatggacatgcattcagacagcccagctcatgactc 771



 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 545 gtaggactattcaatttaaccccc 568
           ||||||||||||||||||||||||
Sbjct: 858 gtaggactattcaatttaaccccc 881

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  238 bits (120), Expect = 2e-59
 Identities = 285/340 (83%)
 Strand = Plus / Plus

                                                                            
Query: 76       agcatgagattcagtatggaggcgacaatccgttggcctctccaagatcacaatatgcaa 135
                |||| ||||| ||||||||||| |||||| | |  |||||||||||||||||  ||||||
Sbjct: 11685796 agcacgagatccagtatggaggtgacaatgcatcagcctctccaagatcacagcatgcaa 11685855

                                                                            
Query: 136      gccaaagcactcaggctaccgtgcatatgcccaacacaagcagccagcaaccatctgcga 195
                ||||||||||||| ||||| |||| ||| ||||||||||  |||||||| |||||  | |
Sbjct: 11685856 gccaaagcactcaagctacagtgcctattcccaacacaatgagccagcagccatcaccaa 11685915

                                                                            
Query: 196      gcttatttgcactaggaaacccagggttgacgcagcccaagaactcggcggtcttttcca 255
                 ||||||||| ||||||||  |||| |||  |||| |||||||||| ||||||||||| |
Sbjct: 11685916 acttatttgcgctaggaaatacaggattggtgcagtccaagaactcagcggtcttttcaa 11685975

                                                                            
Query: 256      acgcactatccagccccgtgcgccggggcctgcaaccataccatctggatcagggtgggg 315
                | |||||||| |||||||| |||||| |||||||||||| ||| ||||| |||||||| |
Sbjct: 11685976 atgcactatctagccccgttcgccggagcctgcaaccattccacctggagcagggtggcg 11686035

                                                                            
Query: 316      atgcaggctactttgcgaacggcttggcccgcgagccgaatcccacggcttcaaacgact 375
                |||| || ||||| || |||||| |   |||||| |  ||  | |||||||| ||||| |
Sbjct: 11686036 atgcggggtacttcgcaaacggcgttaaccgcgatcaaaactcgacggcttcgaacgatt 11686095

                                                        
Query: 376      catccatggacatgcattcggacagcccagctcacgactc 415
                ||||||||||||||||||| |||||||||||||| |||||
Sbjct: 11686096 catccatggacatgcattcagacagcccagctcatgactc 11686135



 Score =  105 bits (53), Expect = 2e-19
 Identities = 71/77 (92%)
 Strand = Plus / Plus

                                                                            
Query: 1        agctgtatgaatggatcttaagacagcatgaaaatggcttgaggctgacagtgggtgata 60
                |||| |||||||||||||| || ||||||||||||||||||||||||||||| | |||||
Sbjct: 11684242 agctctatgaatggatcttgaggcagcatgaaaatggcttgaggctgacagttgctgata 11684301

                                 
Query: 61       tagcctcgcacgtccag 77
                ||||||||||| |||||
Sbjct: 11684302 tagcctcgcacatccag 11684318



 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                        
Query: 545      gtaggactattcaatttaaccccc 568
                ||||||||||||||||||||||||
Sbjct: 11686222 gtaggactattcaatttaaccccc 11686245

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>dbj|AP005508.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0711F01
          Length = 193091

 Score =  238 bits (120), Expect = 2e-59
 Identities = 285/340 (83%)
 Strand = Plus / Plus

                                                                          
Query: 76     agcatgagattcagtatggaggcgacaatccgttggcctctccaagatcacaatatgcaa 135
              |||| ||||| ||||||||||| |||||| | |  |||||||||||||||||  ||||||
Sbjct: 120430 agcacgagatccagtatggaggtgacaatgcatcagcctctccaagatcacagcatgcaa 120489

                                                                          
Query: 136    gccaaagcactcaggctaccgtgcatatgcccaacacaagcagccagcaaccatctgcga 195
              ||||||||||||| ||||| |||| ||| ||||||||||  |||||||| |||||  | |
Sbjct: 120490 gccaaagcactcaagctacagtgcctattcccaacacaatgagccagcagccatcaccaa 120549

                                                                          
Query: 196    gcttatttgcactaggaaacccagggttgacgcagcccaagaactcggcggtcttttcca 255
               ||||||||| ||||||||  |||| |||  |||| |||||||||| ||||||||||| |
Sbjct: 120550 acttatttgcgctaggaaatacaggattggtgcagtccaagaactcagcggtcttttcaa 120609

                                                                          
Query: 256    acgcactatccagccccgtgcgccggggcctgcaaccataccatctggatcagggtgggg 315
              | |||||||| |||||||| |||||| |||||||||||| ||| ||||| |||||||| |
Sbjct: 120610 atgcactatctagccccgttcgccggagcctgcaaccattccacctggagcagggtggcg 120669

                                                                          
Query: 316    atgcaggctactttgcgaacggcttggcccgcgagccgaatcccacggcttcaaacgact 375
              |||| || ||||| || |||||| |   |||||| |  ||  | |||||||| ||||| |
Sbjct: 120670 atgcggggtacttcgcaaacggcgttaaccgcgatcaaaactcgacggcttcgaacgatt 120729

                                                      
Query: 376    catccatggacatgcattcggacagcccagctcacgactc 415
              ||||||||||||||||||| |||||||||||||| |||||
Sbjct: 120730 catccatggacatgcattcagacagcccagctcatgactc 120769



 Score =  105 bits (53), Expect = 2e-19
 Identities = 71/77 (92%)
 Strand = Plus / Plus

                                                                          
Query: 1      agctgtatgaatggatcttaagacagcatgaaaatggcttgaggctgacagtgggtgata 60
              |||| |||||||||||||| || ||||||||||||||||||||||||||||| | |||||
Sbjct: 118876 agctctatgaatggatcttgaggcagcatgaaaatggcttgaggctgacagttgctgata 118935

                               
Query: 61     tagcctcgcacgtccag 77
              ||||||||||| |||||
Sbjct: 118936 tagcctcgcacatccag 118952



 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 545    gtaggactattcaatttaaccccc 568
              ||||||||||||||||||||||||
Sbjct: 120856 gtaggactattcaatttaaccccc 120879

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>gb|AY107736.1| Zea mays PCO090313 mRNA sequence
          Length = 1090

 Score =  224 bits (113), Expect = 3e-55
 Identities = 344/421 (81%)
 Strand = Plus / Plus

                                                                       
Query: 6   tatgaatggatcttaagacagcatgaaaatggcttgaggctgacagtgggtgatatagcc 65
           |||||||||||| | || ||||| |||||||| |||||||| ||||| | |||| |||||
Sbjct: 408 tatgaatggatcctgaggcagcacgaaaatggtttgaggctaacagttgctgatgtagcc 467

                                                                       
Query: 66  tcgcacgtccagcatgagattcagtatggaggcgacaatccgttggcctctccaagatca 125
           || ||  ||||||||||||||||||||||||| |||||| | |  ||||||||||| |||
Sbjct: 468 tcccatatccagcatgagattcagtatggaggtgacaatgcatcagcctctccaaggtca 527

                                                                       
Query: 126 caatatgcaagccaaagcactcaggctaccgtgcatatgcccaacacaagcagccagcaa 185
           |||||  | ||||||||||||    | ||  |||| || ||||||||||||| |||||||
Sbjct: 528 caataccctagccaaagcactgcaccgacaatgcacattcccaacacaagcaaccagcaa 587

                                                                       
Query: 186 ccatctgcgagcttatttgcactaggaaacccagggttgacgcagcccaagaactcggcg 245
           |||||  | |||||||||||   ||||||||| |||||||| ||| ||||||| ||   |
Sbjct: 588 ccatcgccaagcttatttgcttcaggaaaccctgggttgacacagtccaagaattccatg 647

                                                                       
Query: 246 gtcttttccaacgcactatccagccccgtgcgccggggcctgcaaccataccatctggat 305
           |||||||| | |||| ||||||||||| | || ||| |||||| ||| ||||| || || 
Sbjct: 648 gtcttttcaagcgcattatccagccccatccggcggagcctgccaccttaccacctagag 707

                                                                       
Query: 306 cagggtggggatgcaggctactttgcgaacggcttggcccgcgagccgaatcccacggct 365
           ||||  ||||||||||| ||||| ||||||||      ||||||   ||| |||||||||
Sbjct: 708 caggacggggatgcagggtacttcgcgaacggtgcaagccgcgatgtgaaccccacggct 767

                                                                       
Query: 366 tcaaacgactcatccatggacatgcattcggacagcccagctcacgactcctcctgagca 425
           || || || || |||||||||||||| ||||||||||||||||| ||||||| |||||||
Sbjct: 768 tcgaatgattcgtccatggacatgcactcggacagcccagctcatgactcctactgagca 827

            
Query: 426 g 426
           |
Sbjct: 828 g 828

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>gb|BT018115.1| Zea mays clone EL01N0553H03.c mRNA sequence
          Length = 1357

 Score =  196 bits (99), Expect = 6e-47
 Identities = 288/351 (82%)
 Strand = Plus / Plus

                                                                        
Query: 76   agcatgagattcagtatggaggcgacaatccgttggcctctccaagatcacaatatgcaa 135
            |||||||||||||||||||||| |||||| | |  ||||||||||| ||||||||  | |
Sbjct: 770  agcatgagattcagtatggaggtgacaatgcatcagcctctccaaggtcacaatacccta 829

                                                                        
Query: 136  gccaaagcactcaggctaccgtgcatatgcccaacacaagcagccagcaaccatctgcga 195
            |||||||||||    | ||  |||| || ||||||||||||| ||||||||||||  | |
Sbjct: 830  gccaaagcactgcaccgacaatgcacattcccaacacaagcaaccagcaaccatcgccaa 889

                                                                        
Query: 196  gcttatttgcactaggaaacccagggttgacgcagcccaagaactcggcggtcttttcca 255
            |||||||||| | ||||||||| |||||||| ||| ||||||| ||   ||||||||| |
Sbjct: 890  gcttatttgctccaggaaaccctgggttgacacagtccaagaattccatggtcttttcaa 949

                                                                        
Query: 256  acgcactatccagccccgtgcgccggggcctgcaaccataccatctggatcagggtgggg 315
             |||| ||||||||||| | || ||| |||||||||| ||||| || || ||||  ||||
Sbjct: 950  gcgcattatccagccccatccggcggagcctgcaaccttaccacctagagcaggacgggg 1009

                                                                        
Query: 316  atgcaggctactttgcgaacggcttggcccgcgagccgaatcccacggcttcaaacgact 375
            ||||||| ||||| ||||||||      ||||||   ||| ||||||||||| || || |
Sbjct: 1010 atgcagggtacttcgcgaacggtgcaagccgcgatgtgaaccccacggcttcgaatgatt 1069

                                                               
Query: 376  catccatggacatgcattcggacagcccagctcacgactcctcctgagcag 426
            | |||||||||||||| ||||||||||||||||| ||||||| ||||||||
Sbjct: 1070 cgtccatggacatgcactcggacagcccagctcatgactcctactgagcag 1120



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                       
Query: 6   tatgaatggatcttaagacagcatgaaaatggcttgaggctgacagtgggtgatatagcc 65
           |||||||||||| | || ||||| |||||||| |||||||| ||||| | |||| |||||
Sbjct: 360 tatgaatggatcctgaggcagcacgaaaatggtttgaggctaacagttgctgatgtagcc 419

             
Query: 66  tc 67
           ||
Sbjct: 420 tc 421

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>ref|XM_482242.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 911

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 71/83 (85%)
 Strand = Plus / Plus

                                                                       
Query: 22  gacagcatgaaaatggcttgaggctgacagtgggtgatatagcctcgcacgtccagcatg 81
           |||||||||||| |||||||||||| |||||   ||| ||||| || ||| ||||||| |
Sbjct: 268 gacagcatgaaattggcttgaggctcacagtatctgacatagcatcccacatccagcacg 327

                                  
Query: 82  agattcagtatggaggcgacaat 104
           ||||| |||||||||| ||||||
Sbjct: 328 agattgagtatggaggtgacaat 350

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>ref|XM_507223.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1198_B10.8 mRNA
          Length = 1009

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 71/83 (85%)
 Strand = Plus / Plus

                                                                       
Query: 22  gacagcatgaaaatggcttgaggctgacagtgggtgatatagcctcgcacgtccagcatg 81
           |||||||||||| |||||||||||| |||||   ||| ||||| || ||| ||||||| |
Sbjct: 289 gacagcatgaaattggcttgaggctcacagtatctgacatagcatcccacatccagcacg 348

                                  
Query: 82  agattcagtatggaggcgacaat 104
           ||||| |||||||||| ||||||
Sbjct: 349 agattgagtatggaggtgacaat 371

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>ref|XM_507222.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1198_B10.8 mRNA
          Length = 1358

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 71/83 (85%)
 Strand = Plus / Plus

                                                                       
Query: 22  gacagcatgaaaatggcttgaggctgacagtgggtgatatagcctcgcacgtccagcatg 81
           |||||||||||| |||||||||||| |||||   ||| ||||| || ||| ||||||| |
Sbjct: 374 gacagcatgaaattggcttgaggctcacagtatctgacatagcatcccacatccagcacg 433

                                  
Query: 82  agattcagtatggaggcgacaat 104
           ||||| |||||||||| ||||||
Sbjct: 434 agattgagtatggaggtgacaat 456

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>dbj|AK109817.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-148-A02, full
           insert sequence
          Length = 1358

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 71/83 (85%)
 Strand = Plus / Plus

                                                                       
Query: 22  gacagcatgaaaatggcttgaggctgacagtgggtgatatagcctcgcacgtccagcatg 81
           |||||||||||| |||||||||||| |||||   ||| ||||| || ||| ||||||| |
Sbjct: 374 gacagcatgaaattggcttgaggctcacagtatctgacatagcatcccacatccagcacg 433

                                  
Query: 82  agattcagtatggaggcgacaat 104
           ||||| |||||||||| ||||||
Sbjct: 434 agattgagtatggaggtgacaat 456

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>dbj|AK098973.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089E18, full
           insert sequence
          Length = 913

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 71/83 (85%)
 Strand = Plus / Plus

                                                                       
Query: 22  gacagcatgaaaatggcttgaggctgacagtgggtgatatagcctcgcacgtccagcatg 81
           |||||||||||| |||||||||||| |||||   ||| ||||| || ||| ||||||| |
Sbjct: 268 gacagcatgaaattggcttgaggctcacagtatctgacatagcatcccacatccagcacg 327

                                  
Query: 82  agattcagtatggaggcgacaat 104
           ||||| |||||||||| ||||||
Sbjct: 328 agattgagtatggaggtgacaat 350

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>dbj|AK060114.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-D12, full
           insert sequence
          Length = 1009

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 71/83 (85%)
 Strand = Plus / Plus

                                                                       
Query: 22  gacagcatgaaaatggcttgaggctgacagtgggtgatatagcctcgcacgtccagcatg 81
           |||||||||||| |||||||||||| |||||   ||| ||||| || ||| ||||||| |
Sbjct: 289 gacagcatgaaattggcttgaggctcacagtatctgacatagcatcccacatccagcacg 348

                                  
Query: 82  agattcagtatggaggcgacaat 104
           ||||| |||||||||| ||||||
Sbjct: 349 agattgagtatggaggtgacaat 371

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                               
Query: 22       gacagcatgaaaatggcttgaggctgacagt 52
                |||||||||||| |||||||||||| |||||
Sbjct: 18951508 gacagcatgaaattggcttgaggctcacagt 18951538

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>dbj|AP003947.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1198_B10
          Length = 119768

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 22    gacagcatgaaaatggcttgaggctgacagt 52
             |||||||||||| |||||||||||| |||||
Sbjct: 36428 gacagcatgaaattggcttgaggctcacagt 36458

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>gb|AC006552.7|AC006552 Homo sapiens chromosome 4 clone C0084L10 map 4p16, complete sequence
          Length = 185393

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 26     gcatgaaaatggcttgaggctga 48
              |||||||||||||||||||||||
Sbjct: 132570 gcatgaaaatggcttgaggctga 132548

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>gb|AC122789.8| Mus musculus chromosome 5, clone RP24-258A20, complete sequence
          Length = 182866

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 428    gctgctacacagagatggaa 447
              ||||||||||||||||||||
Sbjct: 128727 gctgctacacagagatggaa 128746

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>gb|AC168091.3| Mus musculus BAC clone RP23-163F18 from chromosome 14, complete sequence
          Length = 227936

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 624    cctgcttagtctgttgctttgtca 647
              |||||||| |||||||||||||||
Sbjct: 192199 cctgcttattctgttgctttgtca 192176

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>gb|AC137942.6| Mus musculus chromosome 10, clone RP24-502K6, complete sequence
          Length = 173848

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 492   atatccagtgaaagaaagaa 511
             ||||||||||||||||||||
Sbjct: 43562 atatccagtgaaagaaagaa 43543

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>emb|BX548019.36| Zebrafish DNA sequence from clone DKEY-20D1 in linkage group 6, complete
              sequence
          Length = 202848

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 20     aagacagcatgaaaatggct 39
              ||||||||||||||||||||
Sbjct: 121819 aagacagcatgaaaatggct 121800

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>gb|AC131723.1| Mus musculus BAC clone RP23-144E24 from 1, complete sequence
          Length = 200656

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 116    tccaagatcacaatatgcaa 135
              ||||||||||||||||||||
Sbjct: 112070 tccaagatcacaatatgcaa 112051

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>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence
          Length = 1471779

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 271    ccgtgcgccggggcctgcaaccat 294
              ||||||||||||||||||| ||||
Sbjct: 715484 ccgtgcgccggggcctgcacccat 715507

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>emb|AL159151.56| Human DNA sequence from clone RP11-156O2 on chromosome 13, complete
             sequence
          Length = 59116

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 434   acacagagatggaagaacag 453
             ||||||||||||||||||||
Sbjct: 45286 acacagagatggaagaacag 45267

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>emb|AL135793.13| Human DNA sequence from clone RP11-296H2 on chromosome 10 Contains the 3'
              end of the TACC2 gene for transforming, acidic coiled-coil
              containing protein 2 (AZU-1), the gene for a novel protein
              (FLJ25359) and two CpG islands, complete sequence
          Length = 213861

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 43     ggctgacagtgggtgatata 62
              ||||||||||||||||||||
Sbjct: 135741 ggctgacagtgggtgatata 135722

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>gb|AC016919.15| Homo sapiens 3 BAC RP11-220J13 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 165714

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 132    gcaagccaaagcactcaggc 151
              ||||||||||||||||||||
Sbjct: 140245 gcaagccaaagcactcaggc 140226

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>emb|X58831.1|CSGDHANC C.sorokiniana gdhANC gene for NADP-specific glutamate dehydrogenase
            (ANC=Ammonium-inducible, Nuclear encoded, Chloroplastic
            isoenzyme)
          Length = 9872

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 371  cgactcatccatggacatgc 390
            ||||||||||||||||||||
Sbjct: 9375 cgactcatccatggacatgc 9356

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>gb|AC164315.2| Mus musculus BAC clone RP23-18J12 from chromosome 14, complete sequence
          Length = 204011

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 624    cctgcttagtctgttgctttgtca 647
              |||||||| |||||||||||||||
Sbjct: 136573 cctgcttattctgttgctttgtca 136596

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>gb|AC148763.14| Medicago truncatula clone mth2-29o24, complete sequence
          Length = 104879

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 550   actattcaatttaaccccca 569
             ||||||||||||||||||||
Sbjct: 88214 actattcaatttaaccccca 88195

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>gb|AC022039.7| Homo sapiens chromosome 8, clone RP11-3G21, complete sequence
          Length = 176815

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 591    ctataagcaatgtcttatgt 610
              ||||||||||||||||||||
Sbjct: 155070 ctataagcaatgtcttatgt 155089

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>gb|AC022150.6| Homo sapiens chromosome 19 clone CTD-3099C6, complete sequence
          Length = 228156

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 454   catgcacatccagtgaaggg 473
             ||||||||||||||||||||
Sbjct: 29142 catgcacatccagtgaaggg 29161

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>emb|BX571699.10| Zebrafish DNA sequence from clone DKEYP-116G9 in linkage group 6,
             complete sequence
          Length = 173467

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 20    aagacagcatgaaaatggct 39
             ||||||||||||||||||||
Sbjct: 22637 aagacagcatgaaaatggct 22656

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>gb|AC009898.6| Homo sapiens chromosome 8, clone RP11-138H14, complete sequence
          Length = 168539

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 591   ctataagcaatgtcttatgt 610
             ||||||||||||||||||||
Sbjct: 21989 ctataagcaatgtcttatgt 22008

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>gb|AC092405.2| Papio anubis clone RP41-170F23, complete sequence
          Length = 182902

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 614   tcactcctctcctgcttagt 633
             ||||||||||||||||||||
Sbjct: 14720 tcactcctctcctgcttagt 14739

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>emb|BX004878.8| Zebrafish DNA sequence from clone DKEY-11H2 in linkage group 6, complete
              sequence
          Length = 254657

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 20     aagacagcatgaaaatggct 39
              ||||||||||||||||||||
Sbjct: 184424 aagacagcatgaaaatggct 184443

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>dbj|AP001303.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K24M9
          Length = 45292

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 469   aagggacaaactggaagaac 488
             ||||||||||||||||||||
Sbjct: 17446 aagggacaaactggaagaac 17465

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>emb|BX294008.8| Mouse DNA sequence from clone RP23-28K9 on chromosome X, complete
             sequence
          Length = 136485

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 497   cagtgaaagaaagaactggc 516
             ||||||||||||||||||||
Sbjct: 27848 cagtgaaagaaagaactggc 27867

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>emb|AL929457.12| Zebrafish DNA sequence from clone CH211-153I8 in linkage group 14,
              complete sequence
          Length = 164299

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 41     gaggctgacagtgggtgata 60
              ||||||||||||||||||||
Sbjct: 159286 gaggctgacagtgggtgata 159267

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>emb|BX510330.20| Zebrafish DNA sequence from clone DKEYP-82B3 in linkage group 13,
             complete sequence
          Length = 96887

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 41    gaggctgacagtgggtgata 60
             ||||||||||||||||||||
Sbjct: 60479 gaggctgacagtgggtgata 60460

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>gb|AC153964.3| Mus musculus 10 BAC RP24-399H20 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 173453

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 492    atatccagtgaaagaaagaa 511
              ||||||||||||||||||||
Sbjct: 123273 atatccagtgaaagaaagaa 123254


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,126,851
Number of Sequences: 3902068
Number of extensions: 6126851
Number of successful extensions: 91205
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91082
Number of HSP's gapped (non-prelim): 117
length of query: 647
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 624
effective length of database: 17,143,297,704
effective search space: 10697417767296
effective search space used: 10697417767296
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result