ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baal30g12 |
|---|---|
| Clone Library Name | barley_pub |
>SYV_RICFE (Q4UMX8) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 859 Score = 33.1 bits (74), Expect = 0.55 Identities = 20/69 (28%), Positives = 32/69 (46%) Frame = +2 Query: 179 EIEPDLQEDPIDKWRTNGVSPEDFVYGVYDGHHTYDEGQEKKGFWEDVSEWYQEAEPPQG 358 E+EPDL D +D W T+ VSP+ +G+ D E +K + PQ Sbjct: 495 EVEPDL--DVMDTWATSSVSPQLSTHGISDDFTVNKERHDK---------LFPMELRPQA 543 Query: 359 FQALISWSF 385 + + +W+F Sbjct: 544 HEIIRTWAF 552
>E41L2_HUMAN (O43491) Band 4.1-like protein 2 (Generally expressed protein 4.1)| (4.1G) Length = 1005 Score = 32.3 bits (72), Expect = 0.94 Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 5/70 (7%) Frame = +2 Query: 134 SGRAVAVRAGPGPLTEIEPDLQEDPI---DKWRTNGVSPEDFVYGVYDGHHTYDEG--QE 298 +G+ ++ +GPG + ++EP Q+D + ++ E+ G Y HH EG +E Sbjct: 710 NGKEISPGSGPGEIRKVEPVTQKDSTSLSSESSSSSSESEEEDVGEYRPHHRVTEGTIRE 769 Query: 299 KKGFWEDVSE 328 ++ + E+V E Sbjct: 770 EQEYEEEVEE 779
>SYV_RICTY (Q68W50) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 814 Score = 31.2 bits (69), Expect = 2.1 Identities = 20/69 (28%), Positives = 35/69 (50%) Frame = +2 Query: 179 EIEPDLQEDPIDKWRTNGVSPEDFVYGVYDGHHTYDEGQEKKGFWEDVSEWYQEAEPPQG 358 E++PDL D +D W T+ VSP+ YG+ + ++ + K F D+ PQ Sbjct: 448 EVDPDL--DVMDTWATSSVSPQLSTYGISE-DFAINKVRHDKLFPMDLR--------PQA 496 Query: 359 FQALISWSF 385 + + +W+F Sbjct: 497 HEIIRTWAF 505
>SYV_RICCN (Q92GR9) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 812 Score = 30.8 bits (68), Expect = 2.7 Identities = 20/69 (28%), Positives = 34/69 (49%) Frame = +2 Query: 179 EIEPDLQEDPIDKWRTNGVSPEDFVYGVYDGHHTYDEGQEKKGFWEDVSEWYQEAEPPQG 358 E+EPD D +D W T+ VSP+ +G+ D ++ + K F D+ PQ Sbjct: 448 EVEPDY--DVMDTWATSSVSPQLSTHGISD-DFAVNKDRHDKLFPMDLR--------PQA 496 Query: 359 FQALISWSF 385 + + +W+F Sbjct: 497 HEIIRTWAF 505
>SDK2_MOUSE (Q6V4S5) Protein sidekick-2 precursor| Length = 2176 Score = 30.8 bits (68), Expect = 2.7 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 9/74 (12%) Frame = +2 Query: 206 PIDKWRTNGVSPED----FVYGVYDGH-----HTYDEGQEKKGFWEDVSEWYQEAEPPQG 358 P+ + NG +PE YG DGH HT + E++ ED+ EW + Q Sbjct: 1123 PLPEMEYNG-NPESVGYKIKYGRSDGHGKTLSHTVQDRVEREYTIEDLEEWTEYRVQVQA 1181 Query: 359 FQALISWSFPPAVI 400 F A+ S + AV+ Sbjct: 1182 FNAIGSGPWSQAVV 1195
>SYV_RICPR (Q9ZCN6) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 814 Score = 30.4 bits (67), Expect = 3.6 Identities = 13/28 (46%), Positives = 19/28 (67%) Frame = +2 Query: 179 EIEPDLQEDPIDKWRTNGVSPEDFVYGV 262 E++PDL D +D W T+ VSP+ YG+ Sbjct: 448 EVDPDL--DVMDTWATSSVSPQLSTYGI 473
>DLL3_HUMAN (Q9NYJ7) Delta-like protein 3 precursor (Drosophila Delta homolog| 3) Length = 618 Score = 30.4 bits (67), Expect = 3.6 Identities = 17/52 (32%), Positives = 19/52 (36%), Gaps = 1/52 (1%) Frame = -2 Query: 542 WTSPSCRSPAQ-SCAVCPACPSXXXXXXXXX*PPQCKGTPPAHRKPCRG*PR 390 WT P C P S + P PS P C G P A+ C PR Sbjct: 243 WTGPLCTVPVSTSSCLSPRGPSSATTGCLVPGPGPCDGNPCANGGSCSETPR 294
>SACC_BACSU (P05656) Levanase precursor (EC 3.2.1.65) (2,6-beta-D-fructan| fructanohydrolase) Length = 677 Score = 30.4 bits (67), Expect = 3.6 Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 15/84 (17%) Frame = +2 Query: 188 PDLQEDPID------KW---------RTNGVSPEDFVYGVYDGHHTYDEGQEKKGFWEDV 322 PDL E P+D KW +G S + G +DG H +E K W D Sbjct: 225 PDLFELPVDGNPNQKKWVMQVSVGNGAVSGGSGMQYFVGDFDGTHFKNENPPNKVLWTDY 284 Query: 323 SEWYQEAEPPQGFQALISWSFPPA 394 + F A +SWS P+ Sbjct: 285 G---------RDFYAAVSWSDIPS 299
>Y876_METJA (Q58286) Putative ABC transporter permease protein MJ0876| Length = 351 Score = 30.0 bits (66), Expect = 4.6 Identities = 12/31 (38%), Positives = 22/31 (70%) Frame = -3 Query: 334 VPLGDILPEALLFLAFIIGVVAVIHSIHKVL 242 + LGD++P + + FIIGV+ +I S++ +L Sbjct: 193 ITLGDVIPMTICSIIFIIGVMFLIKSLNALL 223
>K6PP_MOUSE (Q9WUA3) 6-phosphofructokinase type C (EC 2.7.1.11)| (Phosphofructokinase 1) (Phosphohexokinase) (Phosphofructo-1-kinase isozyme C) (PFK-C) Length = 784 Score = 30.0 bits (66), Expect = 4.6 Identities = 18/69 (26%), Positives = 28/69 (40%) Frame = +2 Query: 230 GVSPEDFVYGVYDGHHTYDEGQEKKGFWEDVSEWYQEAEPPQGFQALISWSFPPAVILGM 409 G++ ++ +YDG + GQ K+ W DV W + ILG Sbjct: 435 GIADGHKMFAIYDGFEGFANGQIKEIGWADVGGWTGQG----------------GSILGT 478 Query: 410 AFDVPGEYL 436 +PG+YL Sbjct: 479 KRTLPGKYL 487
>NRAM1_CHICK (P51027) Natural resistance-associated macrophage protein 1 (NRAMP| 1) Length = 555 Score = 30.0 bits (66), Expect = 4.6 Identities = 13/42 (30%), Positives = 24/42 (57%) Frame = -3 Query: 364 LETLRRLSFLVPLGDILPEALLFLAFIIGVVAVIHSIHKVLR 239 L TLR L +L+PLG +L + F+ +++ ++ H + R Sbjct: 493 LPTLRGLGYLIPLGLLLVAYVAFVTYLLWTCSIAHGARFLAR 534
>SECY_PYRSA (P38397) Preprotein translocase secY subunit (Fragment)| Length = 412 Score = 29.6 bits (65), Expect = 6.1 Identities = 23/68 (33%), Positives = 32/68 (47%) Frame = -3 Query: 424 RHIESHAEDDRGGK*PGDERLETLRRLSFLVPLGDILPEALLFLAFIIGVVAVIHSIHKV 245 + +ES R GK D +TL RL+FL LFLAFI V ++I +I + Sbjct: 323 KKMESSIPGVRPGKATTDYLQKTLNRLTFL---------GALFLAFIAVVPSIIENITSI 373 Query: 244 LRADAVGA 221 +GA Sbjct: 374 STFKGLGA 381
>NFAC1_PIG (O77638) Nuclear factor of activated T-cells, cytoplasmic 1 (NFAT| transcription complex cytosolic component) (NF-ATc1) (NF-ATc) (NFATmac) Length = 822 Score = 29.6 bits (65), Expect = 6.1 Identities = 44/181 (24%), Positives = 55/181 (30%), Gaps = 9/181 (4%) Frame = -2 Query: 545 AWTSPSCRSPAQSCAVCPACPSXXXXXXXXX*PPQCKGTPPAHRKPC---------RG*P 393 A+ PSC SPA S + +C S P + PC G P Sbjct: 156 AYRDPSCLSPASSLS-SRSCNSEASSYESSFSYPYASPQTSPWQSPCVSPKTTDPEEGFP 214 Query: 392 RGEMTRR*ALGNPEEAQLLGTTRRHPPRSPSFLGLHHRCGGRHTLHTQSPPG*RRWCATC 213 RG LG LLG+ R P SP G T SP R++ Sbjct: 215 RG-------LG---ACSLLGSPRHSPSTSPRTSVTEESWLGARTSRPSSPCNKRKYGLNG 264 Query: 212 RWXXXXXXXXXXXXXXXXXXXXXPCRCHCSPNSLHHASGVASPLCSAAASPRHGEDEQQW 33 R + CSP+ ASP S +SPR + W Sbjct: 265 R------------------------QLFCSPH--------ASPTPSPHSSPRVSVTDDTW 292 Query: 32 L 30 L Sbjct: 293 L 293
>LPXK_METCA (Q60B49) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A| 4'-kinase) Length = 336 Score = 29.6 bits (65), Expect = 6.1 Identities = 16/46 (34%), Positives = 24/46 (52%) Frame = +2 Query: 326 EWYQEAEPPQGFQALISWSFPPAVILGMAFDVPGEYLYIGAAIFIV 463 +WY EA+PP G +AL S F AV L + + +G + +V Sbjct: 15 QWYAEAQPPWGLRAL-SRGFGAAVALRRGYYRRNAKVSLGVPVIVV 59
>MURB_BURMA (Q62M77) UDP-N-acetylenolpyruvoylglucosamine reductase (EC| 1.1.1.158) (UDP-N-acetylmuramate dehydrogenase) Length = 347 Score = 29.3 bits (64), Expect = 7.9 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 1/80 (1%) Frame = +2 Query: 146 VAVRAG-PGPLTEIEPDLQEDPIDKWRTNGVSPEDFVYGVYDGHHTYDEGQEKKGFWEDV 322 VA R G PG + D + +D+ G S F +DG DE + + ED Sbjct: 30 VAARIGSPGQFASLARDPRVAGLDRLVLGGGSNVVFTRD-FDGLVLLDEIRGRALVREDD 88 Query: 323 SEWYQEAEPPQGFQALISWS 382 WY EA + + A + W+ Sbjct: 89 GAWYVEAGGGENWHAFVEWT 108
>K6PP_RABIT (P47859) 6-phosphofructokinase type C (EC 2.7.1.11)| (Phosphofructokinase 1) (Phosphohexokinase) (Phosphofructo-1-kinase isozyme C) (PFK-C) Length = 791 Score = 29.3 bits (64), Expect = 7.9 Identities = 19/69 (27%), Positives = 29/69 (42%) Frame = +2 Query: 230 GVSPEDFVYGVYDGHHTYDEGQEKKGFWEDVSEWYQEAEPPQGFQALISWSFPPAVILGM 409 G++ ++ VYDG + +GQ K+ W DV W + ILG Sbjct: 436 GIADGHKMFAVYDGFDGFAKGQIKEIRWGDVGGWTGQG----------------GSILGT 479 Query: 410 AFDVPGEYL 436 +PG+YL Sbjct: 480 KRILPGKYL 488
>CWC27_ASPFU (Q4WE62) Peptidyl-prolyl isomerase cwc27 (EC 5.2.1.8)| Length = 559 Score = 29.3 bits (64), Expect = 7.9 Identities = 14/44 (31%), Positives = 21/44 (47%) Frame = -2 Query: 434 GTPPAHRKPCRG*PRGEMTRR*ALGNPEEAQLLGTTRRHPPRSP 303 G PPA+ P + P E R +P + L R+H P++P Sbjct: 254 GIPPANDAPKKTSPEAEQQTRKRPRSPSPRRSLSAERKHRPKTP 297
>MURB_BURPS (Q63WM3) UDP-N-acetylenolpyruvoylglucosamine reductase (EC| 1.1.1.158) (UDP-N-acetylmuramate dehydrogenase) Length = 349 Score = 29.3 bits (64), Expect = 7.9 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 1/80 (1%) Frame = +2 Query: 146 VAVRAG-PGPLTEIEPDLQEDPIDKWRTNGVSPEDFVYGVYDGHHTYDEGQEKKGFWEDV 322 VA R G PG + D + +D+ G S F +DG DE + + ED Sbjct: 32 VAARIGSPGQFASLARDPRVAGLDRLVLGGGSNVVFTRD-FDGLVLLDEIRGRALVREDD 90 Query: 323 SEWYQEAEPPQGFQALISWS 382 WY EA + + A + W+ Sbjct: 91 GAWYVEAGGGENWHAFVEWT 110
>MURB_BURP1 (Q3JVB9) UDP-N-acetylenolpyruvoylglucosamine reductase (EC| 1.1.1.158) (UDP-N-acetylmuramate dehydrogenase) Length = 349 Score = 29.3 bits (64), Expect = 7.9 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 1/80 (1%) Frame = +2 Query: 146 VAVRAG-PGPLTEIEPDLQEDPIDKWRTNGVSPEDFVYGVYDGHHTYDEGQEKKGFWEDV 322 VA R G PG + D + +D+ G S F +DG DE + + ED Sbjct: 32 VAARIGSPGQFASLARDPRVAGLDRLVLGGGSNVVFTRD-FDGLVLLDEIRGRALVREDD 90 Query: 323 SEWYQEAEPPQGFQALISWS 382 WY EA + + A + W+ Sbjct: 91 GAWYVEAGGGENWHAFVEWT 110
>NQO2_RAT (Q6AY80) Ribosyldihydronicotinamide dehydrogenase [quinone] (EC| 1.10.99.2) (NRH dehydrogenase [quinone] 2) (Quinone reductase 2) (QR2) (NRH:quinone oxidoreductase 2) Length = 230 Score = 29.3 bits (64), Expect = 7.9 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 11/77 (14%) Frame = +2 Query: 236 SPEDFVYGVYDGHHTYDEGQEKKGFWEDVSEWYQEAEPPQG--FQALISWSFPPAVILG- 406 +PE F YG+ Y E +KK D+ E ++ + FQ + W PA++ G Sbjct: 61 NPEVFKYGI----EAY-EAYKKKALTSDILEEQRKVQEADLVIFQFPLYWFSVPAILKGW 115 Query: 407 --------MAFDVPGEY 433 AFDVPG Y Sbjct: 116 MDRVLCQGFAFDVPGFY 132
>NQO2_MOUSE (Q9JI75) Ribosyldihydronicotinamide dehydrogenase [quinone] (EC| 1.10.99.2) (NRH dehydrogenase [quinone] 2) (Quinone reductase 2) (QR2) (NRH:quinone oxidoreductase 2) Length = 230 Score = 29.3 bits (64), Expect = 7.9 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 11/77 (14%) Frame = +2 Query: 236 SPEDFVYGVYDGHHTYDEGQEKKGFWEDVSEWYQEAEPPQG--FQALISWSFPPAVILG- 406 +P+ F YG+ + H Y +KK D+ E ++ + FQ + W PA++ G Sbjct: 61 NPDVFSYGI-ETHEAY----KKKALTSDIFEEQRKVQEADLVIFQFPLYWFSVPAILKGW 115 Query: 407 --------MAFDVPGEY 433 AFD+PG Y Sbjct: 116 MDRVLCRGFAFDIPGFY 132
>K6PL_RAT (P30835) 6-phosphofructokinase, liver type (EC 2.7.1.11)| (Phosphofructokinase 1) (Phosphohexokinase) (Phosphofructo-1-kinase isozyme B) (PFK-B) Length = 779 Score = 29.3 bits (64), Expect = 7.9 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = +2 Query: 230 GVSPEDFVYGVYDGHHTYDEGQEKKGFWEDVSEW 331 G+S VY V+DG +GQ ++ W DV+ W Sbjct: 424 GISEGHTVYVVHDGFEGLAKGQVQEVGWHDVAGW 457
>Y2022_ARCFU (O28257) Hypothetical protein AF2022| Length = 175 Score = 29.3 bits (64), Expect = 7.9 Identities = 12/26 (46%), Positives = 18/26 (69%) Frame = +2 Query: 179 EIEPDLQEDPIDKWRTNGVSPEDFVY 256 EI PD+++ + K +GVSP +FVY Sbjct: 6 EIPPDMEKLLVKKCEESGVSPSEFVY 31 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,141,214 Number of Sequences: 219361 Number of extensions: 1819656 Number of successful extensions: 5456 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 5085 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5455 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4585734400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
