>TTP_BOVIN (P53781) Tristetraproline (TTP) (Zinc finger protein 36 homolog)|
           (Zfp-36) (TIS11A protein) (TIS11)
          Length = 324

 Score = 26.2 bits (56), Expect(2) = 1.4
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = -2

Query: 439 SSPWPATASLTHSPCPLGAPAGHARHLEPPSLPSCC 332
           SSP P    L  SP    A  GH    +P   P+CC
Sbjct: 215 SSPPPPPGDLLLSPSAFSAAPGHLCRRDP--TPACC 248



 Score = 24.6 bits (52), Expect(2) = 1.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 617 TPPPVSLLGALRAPPAFSPSSA 552
           +PPP SL G   +  +FSPSS+
Sbjct: 195 SPPPASLAGPSVSSWSFSPSSS 216

>HNRLL_MOUSE (Q921F4) Heterogeneous nuclear ribonucleoprotein L-like|
          Length = 591

 Score = 26.6 bits (57), Expect(2) = 1.7
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = +3

Query: 261 EITASQEEASTRKQQSSRAL*RNRQQDGRDGGSRCRA*PAGAPKGQGECVKEAVAGQGDE 440
           EI  S EE+  R++ + +A   +    G DGG        G    +GE  +E   G GDE
Sbjct: 33  EIVYSAEESENRQEATPQAG-SDSDSGGGDGGDGDGGSGGGGDGEEGEGGEEGDEGDGDE 91



 Score = 23.9 bits (50), Expect(2) = 1.7
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 556 DEGENAGGARRAPRRDTGGG 615
           DEG + GG R  P    GGG
Sbjct: 97  DEGGSGGGPRSMPLSTEGGG 116

>WOX3B_MAIZE (Q6S3I3) WUSCHEL-related homeobox 3B (Narrow sheath protein 2)|
          Length = 265

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 31/118 (26%), Positives = 45/118 (38%), Gaps = 14/118 (11%)
 Frame = -2

Query: 622 HQHHHRCPS*APCEHLLHFRLRLPSLSGTLHDASASTPLMTGWHHHQK-----NWXXXXX 458
           H HHH   +     HL +   +  +++  L+ A+A    + G     +            
Sbjct: 124 HHHHHPYATSFSMPHLGYLGQQAATVTPVLNPAAAGMVDLAGAGAGNRATGAGGAYGGGA 183

Query: 457 XXXTSCSS----PWPATASLTHSPCPLGAPAGH-----ARHLEPPSLPSCCRFRYKAL 311
               SCSS     W AT  + H     GA +G      A HL+   LP+CCR   K L
Sbjct: 184 GLYNSCSSNQLEVWDATEPMDHCNASCGAASGSSDEGGAAHLQ---LPACCRRPLKTL 238

>WOX3A_MAIZE (Q70UV1) WUSCHEL-related homeobox 3A (Narrow sheath protein 1)|
          Length = 262

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
 Frame = -2

Query: 445 SCSS----PWPATASLTHSPCPLGAPAGHARHLEPPSLPSCCRFRYKAL 311
           SCSS     W AT ++ H     GA +G +       LP CCR   K L
Sbjct: 187 SCSSNQLEEWEATDAMEHCDASCGAASGSSDEGGALQLPPCCRRPLKTL 235

>COAE_MYCPA (Q740M4) Dephospho-CoA kinase (EC 2.7.1.24) (Dephosphocoenzyme A|
           kinase)
          Length = 407

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 3   RKEVSGDPLINWHGRTHGTADGGRP 77
           R + +GDP + WH R H +AD GRP
Sbjct: 307 RYDHTGDPAL-WHKRIHASADPGRP 330

>ARHG7_HUMAN (Q14155) Rho guanine nucleotide exchange factor 7 (PAK-interacting|
           exchange factor beta) (Beta-Pix) (COOL-1) (p85)
          Length = 803

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -1

Query: 197 RPLSVECRVPLQPLRGQQAPALRRELSSLKRRMEPPLVKRRP 72
           +P S+ C  P  PLR   A   + +LS   + M+  L KR+P
Sbjct: 648 KPWSLSCLRPAPPLRPSAALCYKEDLSKSPKTMKKLLPKRKP 689

>ARHG7_RAT (O55043) Rho guanine nucleotide exchange factor 7 (PAK-interacting|
           exchange factor beta) (Beta-Pix)
          Length = 646

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -1

Query: 197 RPLSVECRVPLQPLRGQQAPALRRELSSLKRRMEPPLVKRRP 72
           +P S+ C  P  PLR   A   + +LS   + M+  L KR+P
Sbjct: 470 KPWSLSCLRPAPPLRPSAALCYKEDLSRSPKTMKKLLPKRKP 511


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,881,112
Number of Sequences: 219361
Number of extensions: 1404485
Number of successful extensions: 5277
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5264
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5938641176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)