ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal30f22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SAK1_SCHPO (P48383) Protein sak1 31 0.70
2VG48_SHV21 (Q01033) Hypothetical gene 48 protein 29 3.5
3SUVH1_ARATH (Q9FF80) Histone-lysine N-methyltransferase, H3 lysi... 28 4.5

>SAK1_SCHPO (P48383) Protein sak1|
          Length = 766

 Score = 31.2 bits (69), Expect = 0.70
 Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 17/67 (25%)
 Frame = +1

Query: 4   CGISE*VAXLMEWSSSFSTCS--------------ARD---RRYTKKEAPGILTRLGDIF 132
           C   E VA L EW S  STCS              A D    R   ++  G+L R+ D F
Sbjct: 558 CNDKEAVAALDEWYSILSTCSNPSELLDPLKDKHEASDTSMNRVELRQIDGVLDRMADFF 617

Query: 133 LVLFSMF 153
           L L S F
Sbjct: 618 LELPSRF 624



to top

>VG48_SHV21 (Q01033) Hypothetical gene 48 protein|
          Length = 797

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 8   ASLSEWPN*WSGRQAFPHVQREIGATPR 91
           A+  EW N W   Q FP+V R +G   R
Sbjct: 20  ANKEEWDNIWKNFQQFPNVSRTLGLLRR 47



to top

>SUVH1_ARATH (Q9FF80) Histone-lysine N-methyltransferase, H3 lysine-9 specific|
           SUVH1 (EC 2.1.1.43) (Histone H3-K9 methyltransferase 1)
           (H3-K9-HMTase 1) (Suppressor of variegation 3-9 homolog
           protein 1) (Su(var)3-9 homolog protein 1) (Protein SET
           DOMAIN GR
          Length = 670

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +1

Query: 49  SFSTCSARDRRYTKKEAPGIL--TRLGDIFLVLFSM 150
           S STC  R  R   K+ PGI+    +GD+F   F M
Sbjct: 193 SGSTCMGRGVRTNTKKRPGIVPGVEIGDVFFFRFEM 228


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,284,479
Number of Sequences: 219361
Number of extensions: 729601
Number of successful extensions: 1416
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1415
length of database: 80,573,946
effective HSP length: 74
effective length of database: 64,341,232
effective search space used: 1544189568
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top