| Clone Name | baal30f19 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X57952.1|TAPRK T.aestivum PRK gene for ribulose-5-phosphate kinase Length = 2501 Score = 821 bits (414), Expect = 0.0 Identities = 448/460 (97%) Strand = Plus / Plus Query: 1 gagcagctccaagnngttgggcagcaaacatggcattctgcagcccacacaccaccacat 60 ||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||| Sbjct: 195 gagcagctccaagaggtcgggcagcaaacatggcattctgcagcccacacagcaccacat 254 Query: 61 ccctgcgctccccatgcaccaccatcccaaactcaggcttcaggcagaaccaagtcatcc 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 255 ccctgcgctccccatgcaccaccatcccaaactctggcttcaggcagaaccaagtcatcc 314 Query: 121 tcttcacaaccagaagcagcaggaggagtaccacgaggcatggagcaaggaccttccagg 180 ||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct: 315 tcttcacgaccagaagcagcaggaggagtaacacgaggcatggggcaaggaccttccagg 374 Query: 181 tctcatgcgcagttgagaagccaatagtgattggcctggcagcagactcgggatgtggga 240 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 375 tctcatgcgcagttgagcagccaatagtgattggcctggcagcagactcgggatgtggga 434 Query: 241 aatccaccttcatgcgccggctcaccagcgtgtttggaggtgctgcagagccacccaagg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 435 aatccaccttcatgcgccggctcaccagcgtgtttggaggtgctgcagagccacccaagg 494 Query: 301 gcggcaacccagactcgaacacgctcatcagcgacacgacgacggtcatatgccttgatg 360 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 495 gcggcaacccagactccaacacgctcatcagcgacacgacgacggtcatatgccttgatg 554 Query: 361 actaccattccttggacagaaccgggaggaaggagaaaggtgtgactgccctggacccca 420 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 555 actaccattccttggacagaaccgggaggaaggagaaaggtgtgaccgccctggacccca 614 Query: 421 aggcaaacgactttgatctcatgtatgagcaagtgaaggc 460 ||||||||||||||||||||||||||||||| |||||||| Sbjct: 615 aggcaaacgactttgatctcatgtatgagcaggtgaaggc 654
>emb|X51608.1|TAPRKGEN Triticum aestivum RNA for phosphoribulokinase Length = 1533 Score = 815 bits (411), Expect = 0.0 Identities = 449/461 (97%), Gaps = 1/461 (0%) Strand = Plus / Plus Query: 1 gagcagctcc-aagnngttgggcagcaaacatggcattctgcagcccacacaccaccaca 59 |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 35 gagcagctcccaagaggttgggcagcaaacatggcattctgcagcccacacaccaccaca 94 Query: 60 tccctgcgctccccatgcaccaccatcccaaactcaggcttcaggcagaaccaagtcatc 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 95 tccctgcgctccccatgcaccaccatcccaaactcaggcttcaggcagaaccaagtcatc 154 Query: 120 ctcttcacaaccagaagcagcaggaggagtaccacgaggcatggagcaaggaccttccag 179 ||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||| Sbjct: 155 ttcttcacgaccagaagcagcaggaggagtaacacgaggcatggggcaaggaccttccag 214 Query: 180 gtctcatgcgcagttgagaagccaatagtgattggcctggcagcagactcgggatgtggg 239 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 215 gtctcatgcgcagttgagcagccaatagtgattggcctggcagcagactcgggatgtggg 274 Query: 240 aaatccaccttcatgcgccggctcaccagcgtgtttggaggtgctgcagagccacccaag 299 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 275 aaatccaccttcatgcgccggctcaccagcgtgtttggaggtgccgcagagccacccaag 334 Query: 300 ggcggcaacccagactcgaacacgctcatcagcgacacgacgacggtcatatgccttgat 359 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 335 ggcggcaacccagactccaacacgctcatcagcgacacgacgacggtcatatgccttgat 394 Query: 360 gactaccattccttggacagaaccgggaggaaggagaaaggtgtgactgccctggacccc 419 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 395 gactaccattccttggacagaaccgggaggaaggagaaaggtgtgaccgccctggacccc 454 Query: 420 aaggcaaacgactttgatctcatgtatgagcaagtgaaggc 460 |||||||||||||||||||||||||||||||| |||||||| Sbjct: 455 aaggcaaacgactttgatctcatgtatgagcaggtgaaggc 495
>gb|AF543191.1| Oryza sativa (indica cultivar-group) phosphoribulokinase precursor gene, complete cds Length = 2443 Score = 404 bits (204), Expect = e-109 Identities = 382/441 (86%), Gaps = 9/441 (2%) Strand = Plus / Plus Query: 23 agcaaacatggcattctgcagcccacacaccaccacatccctgcgctccccatgcaccac 82 |||||| ||||| ||| ||||| ||| ||||||| ||||||| ||||||||||||||| Sbjct: 159 agcaaagatggcgatctccagcctacatgccaccacctccctgcactccccatgcaccac 218 Query: 83 catcccaaactcaggcttcaggcagaaccaagtcatcctcttcacaaccagaagcagcag 142 || | ||| |||||||||||||||| |||||| ||||||| |||||||||| ||| Sbjct: 219 caacacaa------gcttcaggcagaaccaggtcatcttcttcaccaccagaagcaacag 272 Query: 143 gaggagtaccacgaggca---tggagcaaggaccttccaggtctcatgcgcagttgagaa 199 |||| ||| ||| ||| | |||||||| ||||| ||||| |||||| |||| || || Sbjct: 273 gaggggtagcacaaggtacggaggagcaagaacctttcaggtttcatgctcagtcgacaa 332 Query: 200 gccaatagtgattggcctggcagcagactcgggatgtgggaaatccaccttcatgcgccg 259 |||| | ||||||||||| ||||||||||| ||||| ||||| ||||||||||||||| Sbjct: 333 gccagtggtgattggccttgcagcagactcaggatgcgggaagagcaccttcatgcgccg 392 Query: 260 gctcaccagcgtgtttggaggtgctgcagagccacccaagggcggcaacccagactcgaa 319 ||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| || Sbjct: 393 gctcaccagtgtgtttggtggtgctgcagagccacccaagggtggcaacccagactcaaa 452 Query: 320 cacgctcatcagcgacacgacgacggtcatatgccttgatgactaccattccttggacag 379 ||| |||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||| Sbjct: 453 cacactcatcagtgacacgacaacggtgatatgcctcgatgactaccattccttggacag 512 Query: 380 aaccgggaggaaggagaaaggtgtgactgccctggaccccaaggcaaacgactttgatct 439 || || |||||||||||||||||||||||||||||||| | ||||||||| |||||||| Sbjct: 513 gactggcaggaaggagaaaggtgtgactgccctggaccctagggcaaacgattttgatct 572 Query: 440 catgtatgagcaagtgaaggc 460 |||||||||||| |||||||| Sbjct: 573 catgtatgagcaggtgaaggc 593
>gb|AF529237.2| Oryza sativa (indica cultivar-group) phosphoribulokinase precursor mRNA, complete cds; nuclear gene for chloroplast product Length = 1663 Score = 404 bits (204), Expect = e-109 Identities = 382/441 (86%), Gaps = 9/441 (2%) Strand = Plus / Plus Query: 23 agcaaacatggcattctgcagcccacacaccaccacatccctgcgctccccatgcaccac 82 |||||| ||||| ||| ||||| ||| ||||||| ||||||| ||||||||||||||| Sbjct: 159 agcaaagatggcgatctccagcctacatgccaccacctccctgcactccccatgcaccac 218 Query: 83 catcccaaactcaggcttcaggcagaaccaagtcatcctcttcacaaccagaagcagcag 142 || | ||| |||||||||||||||| |||||| ||||||| |||||||||| ||| Sbjct: 219 caacacaa------gcttcaggcagaaccaggtcatcttcttcaccaccagaagcaacag 272 Query: 143 gaggagtaccacgaggca---tggagcaaggaccttccaggtctcatgcgcagttgagaa 199 |||| ||| ||| ||| | |||||||| ||||| ||||| |||||| |||| || || Sbjct: 273 gaggggtagcacaaggtacggaggagcaagaacctttcaggtttcatgctcagtcgacaa 332 Query: 200 gccaatagtgattggcctggcagcagactcgggatgtgggaaatccaccttcatgcgccg 259 |||| | ||||||||||| ||||||||||| ||||| ||||| ||||||||||||||| Sbjct: 333 gccagtggtgattggccttgcagcagactcaggatgcgggaagagcaccttcatgcgccg 392 Query: 260 gctcaccagcgtgtttggaggtgctgcagagccacccaagggcggcaacccagactcgaa 319 ||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| || Sbjct: 393 gctcaccagtgtgtttggtggtgctgcagagccacccaagggtggcaacccagactcaaa 452 Query: 320 cacgctcatcagcgacacgacgacggtcatatgccttgatgactaccattccttggacag 379 ||| |||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||| Sbjct: 453 cacactcatcagtgacacgacaacggtgatatgcctcgatgactaccattccttggacag 512 Query: 380 aaccgggaggaaggagaaaggtgtgactgccctggaccccaaggcaaacgactttgatct 439 || || |||||||||||||||||||||||||||||||| | ||||||||| |||||||| Sbjct: 513 gactggcaggaaggagaaaggtgtgactgccctggaccctagggcaaacgattttgatct 572 Query: 440 catgtatgagcaagtgaaggc 460 |||||||||||| |||||||| Sbjct: 573 catgtatgagcaggtgaaggc 593
>gb|U97113.1|FRU97113 Festuca rubra putative phosphoribulokinase mc7214rc mRNA, partial cds Length = 307 Score = 402 bits (203), Expect = e-109 Identities = 258/279 (92%) Strand = Plus / Plus Query: 26 aaacatggcattctgcagcccacacaccaccacatccctgcgctccccatgcaccaccat 85 ||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||| Sbjct: 23 aaacatggcattctgcagctcacacaccaccacatccctgcactccccacgcaccaccat 82 Query: 86 cccaaactcaggcttcaggcagaaccaagtcatcctcttcacaaccagaagcagcaggag 145 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 83 cccaaactcaggcttcaggcagaaccaagtcatcctcttcacaaccagaacgagcaggag 142 Query: 146 gagtaccacgaggcatggagcaaggaccttccaggtctcatgcgcagttgagaagccaat 205 ||||| ||||||| |||||||||||||||||||||| ||||||||||||| |||||||| Sbjct: 143 gagtaacacgaggaatggagcaaggaccttccaggttacatgcgcagttgacaagccaat 202 Query: 206 agtgattggcctggcagcagactcgggatgtgggaaatccaccttcatgcgccggctcac 265 |||||||||||||||||||||||| ||||||||||||||||| ||||||| ||| Sbjct: 203 agtgattggcctggcagcagactctggatgtgggaaatccactttcatgcnbnnnnncac 262 Query: 266 cagcgtgtttggaggtgctgcagagccacccaagggcgg 304 |||||||||||| ||||||||||||||||||| |||||| Sbjct: 263 cagcgtgtttggtggtgctgcagagccacccaggggcgg 301
>ref|XM_467296.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1494 Score = 389 bits (196), Expect = e-105 Identities = 380/441 (86%), Gaps = 9/441 (2%) Strand = Plus / Plus Query: 23 agcaaacatggcattctgcagcccacacaccaccacatccctgcgctccccatgcaccac 82 |||||| ||||| ||| ||||| ||| ||||||| ||||||| ||||||||||||||| Sbjct: 13 agcaaagatggcgatctccagcctacatgccaccacctccctgcactccccatgcaccac 72 Query: 83 catcccaaactcaggcttcaggcagaaccaagtcatcctcttcacaaccagaagcagcag 142 || | ||| ||||||||||||| || |||||| ||||||| |||||||||| ||| Sbjct: 73 caacacaa------gcttcaggcagaatcaggtcatcttcttcaccaccagaagcaacag 126 Query: 143 gaggagtaccacgaggca---tggagcaaggaccttccaggtctcatgcgcagttgagaa 199 |||| ||| ||| ||| | |||||||| ||||| ||||| |||||| |||| || || Sbjct: 127 gaggggtagcacaaggtacggaggagcaagaacctttcaggtttcatgctcagtcgacaa 186 Query: 200 gccaatagtgattggcctggcagcagactcgggatgtgggaaatccaccttcatgcgccg 259 |||| | ||||||||||| ||||||||||| ||||| ||||| |||||| |||||||| Sbjct: 187 gccagtggtgattggccttgcagcagactcaggatgcgggaagagcacctttatgcgccg 246 Query: 260 gctcaccagcgtgtttggaggtgctgcagagccacccaagggcggcaacccagactcgaa 319 ||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| || Sbjct: 247 gctcaccagtgtgtttggtggtgctgcagagccacccaagggtggcaacccagactcaaa 306 Query: 320 cacgctcatcagcgacacgacgacggtcatatgccttgatgactaccattccttggacag 379 ||| |||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||| Sbjct: 307 cacactcatcagtgacacgacaacggtgatatgcctcgatgactaccattccttggacag 366 Query: 380 aaccgggaggaaggagaaaggtgtgactgccctggaccccaaggcaaacgactttgatct 439 || || |||||||||||||||||||||||||||||||| | ||||||||| |||||||| Sbjct: 367 gactggcaggaaggagaaaggtgtgactgccctggaccctagggcaaacgattttgatct 426 Query: 440 catgtatgagcaagtgaaggc 460 |||||||||||| |||||||| Sbjct: 427 catgtatgagcaggtgaaggc 447
>ref|XM_507520.1| PREDICTED Oryza sativa (japonica cultivar-group), P0459B01.11 mRNA Length = 1556 Score = 389 bits (196), Expect = e-105 Identities = 380/441 (86%), Gaps = 9/441 (2%) Strand = Plus / Plus Query: 23 agcaaacatggcattctgcagcccacacaccaccacatccctgcgctccccatgcaccac 82 |||||| ||||| ||| ||||| ||| ||||||| ||||||| ||||||||||||||| Sbjct: 55 agcaaagatggcgatctccagcctacatgccaccacctccctgcactccccatgcaccac 114 Query: 83 catcccaaactcaggcttcaggcagaaccaagtcatcctcttcacaaccagaagcagcag 142 || | ||| ||||||||||||| || |||||| ||||||| |||||||||| ||| Sbjct: 115 caacacaa------gcttcaggcagaatcaggtcatcttcttcaccaccagaagcaacag 168 Query: 143 gaggagtaccacgaggca---tggagcaaggaccttccaggtctcatgcgcagttgagaa 199 |||| ||| ||| ||| | |||||||| ||||| ||||| |||||| |||| || || Sbjct: 169 gaggggtagcacaaggtacggaggagcaagaacctttcaggtttcatgctcagtcgacaa 228 Query: 200 gccaatagtgattggcctggcagcagactcgggatgtgggaaatccaccttcatgcgccg 259 |||| | ||||||||||| ||||||||||| ||||| ||||| |||||| |||||||| Sbjct: 229 gccagtggtgattggccttgcagcagactcaggatgcgggaagagcacctttatgcgccg 288 Query: 260 gctcaccagcgtgtttggaggtgctgcagagccacccaagggcggcaacccagactcgaa 319 ||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| || Sbjct: 289 gctcaccagtgtgtttggtggtgctgcagagccacccaagggtggcaacccagactcaaa 348 Query: 320 cacgctcatcagcgacacgacgacggtcatatgccttgatgactaccattccttggacag 379 ||| |||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||| Sbjct: 349 cacactcatcagtgacacgacaacggtgatatgcctcgatgactaccattccttggacag 408 Query: 380 aaccgggaggaaggagaaaggtgtgactgccctggaccccaaggcaaacgactttgatct 439 || || |||||||||||||||||||||||||||||||| | ||||||||| |||||||| Sbjct: 409 gactggcaggaaggagaaaggtgtgactgccctggaccctagggcaaacgattttgatct 468 Query: 440 catgtatgagcaagtgaaggc 460 |||||||||||| |||||||| Sbjct: 469 catgtatgagcaggtgaaggc 489
>ref|XM_506922.2| PREDICTED Oryza sativa (japonica cultivar-group), P0459B01.11 mRNA Length = 1626 Score = 389 bits (196), Expect = e-105 Identities = 380/441 (86%), Gaps = 9/441 (2%) Strand = Plus / Plus Query: 23 agcaaacatggcattctgcagcccacacaccaccacatccctgcgctccccatgcaccac 82 |||||| ||||| ||| ||||| ||| ||||||| ||||||| ||||||||||||||| Sbjct: 147 agcaaagatggcgatctccagcctacatgccaccacctccctgcactccccatgcaccac 206 Query: 83 catcccaaactcaggcttcaggcagaaccaagtcatcctcttcacaaccagaagcagcag 142 || | ||| ||||||||||||| || |||||| ||||||| |||||||||| ||| Sbjct: 207 caacacaa------gcttcaggcagaatcaggtcatcttcttcaccaccagaagcaacag 260 Query: 143 gaggagtaccacgaggca---tggagcaaggaccttccaggtctcatgcgcagttgagaa 199 |||| ||| ||| ||| | |||||||| ||||| ||||| |||||| |||| || || Sbjct: 261 gaggggtagcacaaggtacggaggagcaagaacctttcaggtttcatgctcagtcgacaa 320 Query: 200 gccaatagtgattggcctggcagcagactcgggatgtgggaaatccaccttcatgcgccg 259 |||| | ||||||||||| ||||||||||| ||||| ||||| |||||| |||||||| Sbjct: 321 gccagtggtgattggccttgcagcagactcaggatgcgggaagagcacctttatgcgccg 380 Query: 260 gctcaccagcgtgtttggaggtgctgcagagccacccaagggcggcaacccagactcgaa 319 ||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| || Sbjct: 381 gctcaccagtgtgtttggtggtgctgcagagccacccaagggtggcaacccagactcaaa 440 Query: 320 cacgctcatcagcgacacgacgacggtcatatgccttgatgactaccattccttggacag 379 ||| |||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||| Sbjct: 441 cacactcatcagtgacacgacaacggtgatatgcctcgatgactaccattccttggacag 500 Query: 380 aaccgggaggaaggagaaaggtgtgactgccctggaccccaaggcaaacgactttgatct 439 || || |||||||||||||||||||||||||||||||| | ||||||||| |||||||| Sbjct: 501 gactggcaggaaggagaaaggtgtgactgccctggaccctagggcaaacgattttgatct 560 Query: 440 catgtatgagcaagtgaaggc 460 |||||||||||| |||||||| Sbjct: 561 catgtatgagcaggtgaaggc 581
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 389 bits (196), Expect = e-105 Identities = 380/441 (86%), Gaps = 9/441 (2%) Strand = Plus / Plus Query: 23 agcaaacatggcattctgcagcccacacaccaccacatccctgcgctccccatgcaccac 82 |||||| ||||| ||| ||||| ||| ||||||| ||||||| ||||||||||||||| Sbjct: 28720501 agcaaagatggcgatctccagcctacatgccaccacctccctgcactccccatgcaccac 28720560 Query: 83 catcccaaactcaggcttcaggcagaaccaagtcatcctcttcacaaccagaagcagcag 142 || | ||| ||||||||||||| || |||||| ||||||| |||||||||| ||| Sbjct: 28720561 caacacaa------gcttcaggcagaatcaggtcatcttcttcaccaccagaagcaacag 28720614 Query: 143 gaggagtaccacgaggca---tggagcaaggaccttccaggtctcatgcgcagttgagaa 199 |||| ||| ||| ||| | |||||||| ||||| ||||| |||||| |||| || || Sbjct: 28720615 gaggggtagcacaaggtacggaggagcaagaacctttcaggtttcatgctcagtcgacaa 28720674 Query: 200 gccaatagtgattggcctggcagcagactcgggatgtgggaaatccaccttcatgcgccg 259 |||| | ||||||||||| ||||||||||| ||||| ||||| |||||| |||||||| Sbjct: 28720675 gccagtggtgattggccttgcagcagactcaggatgcgggaagagcacctttatgcgccg 28720734 Query: 260 gctcaccagcgtgtttggaggtgctgcagagccacccaagggcggcaacccagactcgaa 319 ||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| || Sbjct: 28720735 gctcaccagtgtgtttggtggtgctgcagagccacccaagggtggcaacccagactcaaa 28720794 Query: 320 cacgctcatcagcgacacgacgacggtcatatgccttgatgactaccattccttggacag 379 ||| |||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||| Sbjct: 28720795 cacactcatcagtgacacgacaacggtgatatgcctcgatgactaccattccttggacag 28720854 Query: 380 aaccgggaggaaggagaaaggtgtgactgccctggaccccaaggcaaacgactttgatct 439 || || |||||||||||||||||||||||||||||||| | ||||||||| |||||||| Sbjct: 28720855 gactggcaggaaggagaaaggtgtgactgccctggaccctagggcaaacgattttgatct 28720914 Query: 440 catgtatgagcaagtgaaggc 460 |||||||||||| |||||||| Sbjct: 28720915 catgtatgagcaggtgaaggc 28720935
>dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0459B01 Length = 163087 Score = 389 bits (196), Expect = e-105 Identities = 380/441 (86%), Gaps = 9/441 (2%) Strand = Plus / Plus Query: 23 agcaaacatggcattctgcagcccacacaccaccacatccctgcgctccccatgcaccac 82 |||||| ||||| ||| ||||| ||| ||||||| ||||||| ||||||||||||||| Sbjct: 37074 agcaaagatggcgatctccagcctacatgccaccacctccctgcactccccatgcaccac 37133 Query: 83 catcccaaactcaggcttcaggcagaaccaagtcatcctcttcacaaccagaagcagcag 142 || | ||| ||||||||||||| || |||||| ||||||| |||||||||| ||| Sbjct: 37134 caacacaa------gcttcaggcagaatcaggtcatcttcttcaccaccagaagcaacag 37187 Query: 143 gaggagtaccacgaggca---tggagcaaggaccttccaggtctcatgcgcagttgagaa 199 |||| ||| ||| ||| | |||||||| ||||| ||||| |||||| |||| || || Sbjct: 37188 gaggggtagcacaaggtacggaggagcaagaacctttcaggtttcatgctcagtcgacaa 37247 Query: 200 gccaatagtgattggcctggcagcagactcgggatgtgggaaatccaccttcatgcgccg 259 |||| | ||||||||||| ||||||||||| ||||| ||||| |||||| |||||||| Sbjct: 37248 gccagtggtgattggccttgcagcagactcaggatgcgggaagagcacctttatgcgccg 37307 Query: 260 gctcaccagcgtgtttggaggtgctgcagagccacccaagggcggcaacccagactcgaa 319 ||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| || Sbjct: 37308 gctcaccagtgtgtttggtggtgctgcagagccacccaagggtggcaacccagactcaaa 37367 Query: 320 cacgctcatcagcgacacgacgacggtcatatgccttgatgactaccattccttggacag 379 ||| |||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||| Sbjct: 37368 cacactcatcagtgacacgacaacggtgatatgcctcgatgactaccattccttggacag 37427 Query: 380 aaccgggaggaaggagaaaggtgtgactgccctggaccccaaggcaaacgactttgatct 439 || || |||||||||||||||||||||||||||||||| | ||||||||| |||||||| Sbjct: 37428 gactggcaggaaggagaaaggtgtgactgccctggaccctagggcaaacgattttgatct 37487 Query: 440 catgtatgagcaagtgaaggc 460 |||||||||||| |||||||| Sbjct: 37488 catgtatgagcaggtgaaggc 37508
>dbj|AK104857.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-C08, full insert sequence Length = 1494 Score = 389 bits (196), Expect = e-105 Identities = 380/441 (86%), Gaps = 9/441 (2%) Strand = Plus / Plus Query: 23 agcaaacatggcattctgcagcccacacaccaccacatccctgcgctccccatgcaccac 82 |||||| ||||| ||| ||||| ||| ||||||| ||||||| ||||||||||||||| Sbjct: 13 agcaaagatggcgatctccagcctacatgccaccacctccctgcactccccatgcaccac 72 Query: 83 catcccaaactcaggcttcaggcagaaccaagtcatcctcttcacaaccagaagcagcag 142 || | ||| ||||||||||||| || |||||| ||||||| |||||||||| ||| Sbjct: 73 caacacaa------gcttcaggcagaatcaggtcatcttcttcaccaccagaagcaacag 126 Query: 143 gaggagtaccacgaggca---tggagcaaggaccttccaggtctcatgcgcagttgagaa 199 |||| ||| ||| ||| | |||||||| ||||| ||||| |||||| |||| || || Sbjct: 127 gaggggtagcacaaggtacggaggagcaagaacctttcaggtttcatgctcagtcgacaa 186 Query: 200 gccaatagtgattggcctggcagcagactcgggatgtgggaaatccaccttcatgcgccg 259 |||| | ||||||||||| ||||||||||| ||||| ||||| |||||| |||||||| Sbjct: 187 gccagtggtgattggccttgcagcagactcaggatgcgggaagagcacctttatgcgccg 246 Query: 260 gctcaccagcgtgtttggaggtgctgcagagccacccaagggcggcaacccagactcgaa 319 ||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| || Sbjct: 247 gctcaccagtgtgtttggcggtgctgcagagccacccaagggtggcaacccagactcaaa 306 Query: 320 cacgctcatcagcgacacgacgacggtcatatgccttgatgactaccattccttggacag 379 ||| |||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||| Sbjct: 307 cacactcatcagtgacacgacaacggtgatatgcctcgatgactaccattccttggacag 366 Query: 380 aaccgggaggaaggagaaaggtgtgactgccctggaccccaaggcaaacgactttgatct 439 || || |||||||||||||||||||||||||||||||| | ||||||||| |||||||| Sbjct: 367 gactggcaggaaggagaaaggtgtgactgccctggaccctagggcaaacgattttgatct 426 Query: 440 catgtatgagcaagtgaaggc 460 |||||||||||| |||||||| Sbjct: 427 catgtatgagcaggtgaaggc 447
>dbj|AK099461.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013023E19, full insert sequence Length = 1625 Score = 381 bits (192), Expect = e-102 Identities = 379/441 (85%), Gaps = 9/441 (2%) Strand = Plus / Plus Query: 23 agcaaacatggcattctgcagcccacacaccaccacatccctgcgctccccatgcaccac 82 |||||| ||||| ||| ||||| ||| ||||||| ||||||| ||||||||||||||| Sbjct: 146 agcaaagatggcgatctccagcctacatgccaccacctccctgcactccccatgcaccac 205 Query: 83 catcccaaactcaggcttcaggcagaaccaagtcatcctcttcacaaccagaagcagcag 142 || | ||| ||||||||||||| || |||||| ||||||| |||||||||| ||| Sbjct: 206 caacacaa------gcttcaggcagaatcaggtcatcttcttcaccaccagaagcaacag 259 Query: 143 gaggagtaccacgaggca---tggagcaaggaccttccaggtctcatgcgcagttgagaa 199 ||| ||| ||| ||| | |||||||| ||||| ||||| |||||| |||| || || Sbjct: 260 taggggtagcacaaggtacggaggagcaagaacctttcaggtttcatgctcagtcgacaa 319 Query: 200 gccaatagtgattggcctggcagcagactcgggatgtgggaaatccaccttcatgcgccg 259 |||| | ||||||||||| ||||||||||| ||||| ||||| |||||| |||||||| Sbjct: 320 gccagtggtgattggccttgcagcagactcaggatgcgggaagagcacctttatgcgccg 379 Query: 260 gctcaccagcgtgtttggaggtgctgcagagccacccaagggcggcaacccagactcgaa 319 ||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| || Sbjct: 380 gctcaccagtgtgtttggtggtgctgcagagccacccaagggtggcaacccagactcaaa 439 Query: 320 cacgctcatcagcgacacgacgacggtcatatgccttgatgactaccattccttggacag 379 ||| |||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||| Sbjct: 440 cacactcatcagtgacacgacaacggtgatatgcctcgatgactaccattccttggacag 499 Query: 380 aaccgggaggaaggagaaaggtgtgactgccctggaccccaaggcaaacgactttgatct 439 || || |||||||||||||||||||||||||||||||| | ||||||||| |||||||| Sbjct: 500 gactggcaggaaggagaaaggtgtgactgccctggaccctagggcaaacgattttgatct 559 Query: 440 catgtatgagcaagtgaaggc 460 |||||||||||| |||||||| Sbjct: 560 catgtatgagcaggtgaaggc 580
>dbj|AK066164.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013056N04, full insert sequence Length = 1555 Score = 381 bits (192), Expect = e-102 Identities = 379/441 (85%), Gaps = 9/441 (2%) Strand = Plus / Plus Query: 23 agcaaacatggcattctgcagcccacacaccaccacatccctgcgctccccatgcaccac 82 |||||| ||||| ||| ||||| ||| ||||||| ||||||| ||||||||||||||| Sbjct: 55 agcaaagatggcgatctccagcctacatgccaccacctccctgcactccccatgcaccac 114 Query: 83 catcccaaactcaggcttcaggcagaaccaagtcatcctcttcacaaccagaagcagcag 142 || | ||| ||||||||||||| || |||||| ||||||| |||||||||| ||| Sbjct: 115 caacacaa------gcttcaggcagaatcaggtcatcttcttcaccaccagaagcaacag 168 Query: 143 gaggagtaccacgaggca---tggagcaaggaccttccaggtctcatgcgcagttgagaa 199 |||| ||| ||| ||| | |||||||| ||||| ||||| |||||| |||| || || Sbjct: 169 gaggggtagcacaaggtacggaggagcaagaacctttcaggtttcatgctcagtcgacaa 228 Query: 200 gccaatagtgattggcctggcagcagactcgggatgtgggaaatccaccttcatgcgccg 259 |||| | ||||||||||| ||||||||||| ||||| ||||| |||||| |||||||| Sbjct: 229 gccagtggtgattggccttgcagcagactcaggatgcgggaagggcacctttatgcgccg 288 Query: 260 gctcaccagcgtgtttggaggtgctgcagagccacccaagggcggcaacccagactcgaa 319 ||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| || Sbjct: 289 gctcaccagtgtgtttggtggtgctgcagagccacccaagggtggcaacccagactcaaa 348 Query: 320 cacgctcatcagcgacacgacgacggtcatatgccttgatgactaccattccttggacag 379 ||| ||||| || |||||||| ||||| |||||||| ||||||||||||||||||||||| Sbjct: 349 cacactcatgagtgacacgacaacggtgatatgcctcgatgactaccattccttggacag 408 Query: 380 aaccgggaggaaggagaaaggtgtgactgccctggaccccaaggcaaacgactttgatct 439 || || |||||||||||||||||||||||||||||||| | ||||||||| |||||||| Sbjct: 409 gactggcaggaaggagaaaggtgtgactgccctggaccctagggcaaacgattttgatct 468 Query: 440 catgtatgagcaagtgaaggc 460 |||||||||||| |||||||| Sbjct: 469 catgtatgagcaggtgaaggc 489
>gb|AY106347.1| Zea mays PCO092382 mRNA sequence Length = 1513 Score = 238 bits (120), Expect = 1e-59 Identities = 252/296 (85%) Strand = Plus / Plus Query: 165 gcaaggaccttccaggtctcatgcgcagttgagaagccaatagtgattggcctggcagca 224 ||||||| |||||||||||| ||| | || || ||||| | |||||||||||||| ||| Sbjct: 184 gcaaggagcttccaggtctcgtgctccgtcgacaagccggtggtgattggcctggcggca 243 Query: 225 gactcgggatgtgggaaatccaccttcatgcgccggctcaccagcgtgtttggaggtgct 284 ||||| || || || || ||||||||||||||||||||||||||| || || || || Sbjct: 244 gactcagggtgcggcaagagcaccttcatgcgccggctcaccagcgtcttcggtggcgcc 303 Query: 285 gcagagccacccaagggcggcaacccagactcgaacacgctcatcagcgacacgacgacg 344 || ||||| ||||||||||| ||||| ||||| |||||||||||||| ||||| ||||| Sbjct: 304 gcggagccgcccaagggcgggaacccggactccaacacgctcatcagtgacaccacgaca 363 Query: 345 gtcatatgccttgatgactaccattccttggacagaaccgggaggaaggagaaaggtgtg 404 || |||||||| || |||||||||||| ||||||| | ||| |||||||||||||||||| Sbjct: 364 gtgatatgcctcgacgactaccattccctggacaggaacggcaggaaggagaaaggtgtg 423 Query: 405 actgccctggaccccaaggcaaacgactttgatctcatgtatgagcaagtgaaggc 460 || ||||| ||||| | ||| ||| |||||||||||||||||||||| |||||||| Sbjct: 424 accgccctcgaccctagggccaacaactttgatctcatgtatgagcaggtgaaggc 479 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Plus Query: 37 tctgcagcccacacaccaccacatccctgcgctccccatgcaccaccatcccaaactcag 96 |||||||| | ||||| ||||| |||||||||||||||||||| ||| || | ||| ||| Sbjct: 53 tctgcagcgcgcacactaccacctccctgcgctccccatgcacgaccgtctcgaacgcag 112 Query: 97 gcttcaggcagaaccaagtcatc 119 | | |||||||| ||||||||| Sbjct: 113 gtctgaggcagaagcaagtcatc 135
>dbj|AP004488.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT02F05, TM0020, complete sequence Length = 80920 Score = 125 bits (63), Expect = 1e-25 Identities = 210/259 (81%) Strand = Plus / Plus Query: 202 caatagtgattggcctggcagcagactcgggatgtgggaaatccaccttcatgcgccggc 261 |||| |||||||| || || || ||||| ||||||||||| |||||||||| | ||| Sbjct: 19692 caattgtgattggtctagctgctgactcaggatgtgggaagagcaccttcatgaggaggc 19751 Query: 262 tcaccagcgtgtttggaggtgctgcagagccacccaagggcggcaacccagactcgaaca 321 |||| || ||||||||||| || ||||||||||| ||||| || |||||||| || |||| Sbjct: 19752 tcacaagtgtgtttggaggagcagcagagccaccaaagggtgggaacccagattccaaca 19811 Query: 322 cgctcatcagcgacacgacgacggtcatatgccttgatgactaccattccttggacagaa 381 | |||||||| ||||| || || || ||||| | ||||| |||||||| | || |||| Sbjct: 19812 ctctcatcagtgacaccaccactgtgatatgtttggatgattaccattcacttgatagaa 19871 Query: 382 ccgggaggaaggagaaaggtgtgactgccctggaccccaaggcaaacgactttgatctca 441 | || || ||||| || ||||| ||||| || ||||| || || || || |||||||||| Sbjct: 19872 ctggtagaaaggaaaagggtgtcactgcacttgacccaaaagctaatgattttgatctca 19931 Query: 442 tgtatgagcaagtgaaggc 460 ||||||||||||| ||||| Sbjct: 19932 tgtatgagcaagttaaggc 19950
>ref|NM_102940.3| Arabidopsis thaliana ATP binding / kinase/ phosphoribulokinase/ uridine kinase AT1G32060 mRNA, complete cds Length = 1539 Score = 85.7 bits (43), Expect = 1e-13 Identities = 109/131 (83%) Strand = Plus / Plus Query: 246 accttcatgcgccggctcaccagcgtgtttggaggtgctgcagagccacccaagggcggc 305 ||||| ||||| ||||||||||||| ||||| || ||||| ||||||| || ||||| Sbjct: 311 acctttatgcggaggctcaccagcgtctttggtggcgctgctaagccaccaaaaggcggg 370 Query: 306 aacccagactcgaacacgctcatcagcgacacgacgacggtcatatgccttgatgactac 365 ||||| || || ||||| ||||||||||||||||| || || || || |||||||| ||| Sbjct: 371 aaccctgattccaacacactcatcagcgacacgaccactgtgatctgtcttgatgattac 430 Query: 366 cattccttgga 376 ||||| ||||| Sbjct: 431 cattctttgga 441 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 429 gactttgatctcatgtatgagcaagt 454 |||||||||||||||||||||||||| Sbjct: 494 gactttgatctcatgtatgagcaagt 519
>gb|BT000019.1| Arabidopsis thaliana phosphoribulokinase precursor (At1g32060) mRNA, complete cds Length = 1247 Score = 85.7 bits (43), Expect = 1e-13 Identities = 109/131 (83%) Strand = Plus / Plus Query: 246 accttcatgcgccggctcaccagcgtgtttggaggtgctgcagagccacccaagggcggc 305 ||||| ||||| ||||||||||||| ||||| || ||||| ||||||| || ||||| Sbjct: 193 acctttatgcggaggctcaccagcgtctttggtggcgctgctaagccaccaaaaggcggg 252 Query: 306 aacccagactcgaacacgctcatcagcgacacgacgacggtcatatgccttgatgactac 365 ||||| || || ||||| ||||||||||||||||| || || || || |||||||| ||| Sbjct: 253 aaccctgattccaacacactcatcagcgacacgaccactgtgatctgtcttgatgattac 312 Query: 366 cattccttgga 376 ||||| ||||| Sbjct: 313 cattctttgga 323 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 429 gactttgatctcatgtatgagcaagt 454 |||||||||||||||||||||||||| Sbjct: 376 gactttgatctcatgtatgagcaagt 401
>gb|AY128355.1| Arabidopsis thaliana phosphoribulokinase precursor (At1g32060) mRNA, complete cds Length = 1503 Score = 85.7 bits (43), Expect = 1e-13 Identities = 109/131 (83%) Strand = Plus / Plus Query: 246 accttcatgcgccggctcaccagcgtgtttggaggtgctgcagagccacccaagggcggc 305 ||||| ||||| ||||||||||||| ||||| || ||||| ||||||| || ||||| Sbjct: 299 acctttatgcggaggctcaccagcgtctttggtggcgctgctaagccaccaaaaggcggg 358 Query: 306 aacccagactcgaacacgctcatcagcgacacgacgacggtcatatgccttgatgactac 365 ||||| || || ||||| ||||||||||||||||| || || || || |||||||| ||| Sbjct: 359 aaccctgattccaacacactcatcagcgacacgaccactgtgatctgtcttgatgattac 418 Query: 366 cattccttgga 376 ||||| ||||| Sbjct: 419 cattctttgga 429 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 429 gactttgatctcatgtatgagcaagt 454 |||||||||||||||||||||||||| Sbjct: 482 gactttgatctcatgtatgagcaagt 507
>emb|X58149.1|ATPRK A.thaliana PRKase gene for Ribulose-5-phosphate kinase Length = 1495 Score = 85.7 bits (43), Expect = 1e-13 Identities = 109/131 (83%) Strand = Plus / Plus Query: 246 accttcatgcgccggctcaccagcgtgtttggaggtgctgcagagccacccaagggcggc 305 ||||| ||||| ||||||||||||| ||||| || ||||| ||||||| || ||||| Sbjct: 271 acctttatgcggaggctcaccagcgtctttggtggcgctgctaagccaccaaaaggcggg 330 Query: 306 aacccagactcgaacacgctcatcagcgacacgacgacggtcatatgccttgatgactac 365 ||||| || || ||||| ||||||||||||||||| || || || || |||||||| ||| Sbjct: 331 aaccctgattccaacacactcatcagcgacacgaccactgtgatctgtcttgatgattac 390 Query: 366 cattccttgga 376 ||||| ||||| Sbjct: 391 cattctttgga 401 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 429 gactttgatctcatgtatgagcaagt 454 |||||||||||||||||||||||||| Sbjct: 454 gactttgatctcatgtatgagcaagt 479
>gb|AY044335.1| Arabidopsis thaliana Unknown protein (T12O21.4) mRNA, complete cds Length = 1240 Score = 85.7 bits (43), Expect = 1e-13 Identities = 109/131 (83%) Strand = Plus / Plus Query: 246 accttcatgcgccggctcaccagcgtgtttggaggtgctgcagagccacccaagggcggc 305 ||||| ||||| ||||||||||||| ||||| || ||||| ||||||| || ||||| Sbjct: 193 acctttatgcggaggctcaccagcgtctttggtggcgctgctaagccaccaaaaggcggg 252 Query: 306 aacccagactcgaacacgctcatcagcgacacgacgacggtcatatgccttgatgactac 365 ||||| || || ||||| ||||||||||||||||| || || || || |||||||| ||| Sbjct: 253 aaccctgattccaacacactcatcagcgacacgaccactgtgatctgtcttgatgattac 312 Query: 366 cattccttgga 376 ||||| ||||| Sbjct: 313 cattctttgga 323 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 429 gactttgatctcatgtatgagcaagt 454 |||||||||||||||||||||||||| Sbjct: 376 gactttgatctcatgtatgagcaagt 401
>emb|BX814849.1|CNS0AAMX Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS11ZB03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 992 Score = 85.7 bits (43), Expect = 1e-13 Identities = 109/131 (83%) Strand = Plus / Plus Query: 246 accttcatgcgccggctcaccagcgtgtttggaggtgctgcagagccacccaagggcggc 305 ||||| ||||| ||||||||||||| ||||| || ||||| ||||||| || ||||| Sbjct: 312 acctttatgcggaggctcaccagcgtctttggtggcgctgctaagccaccaaaaggcggg 371 Query: 306 aacccagactcgaacacgctcatcagcgacacgacgacggtcatatgccttgatgactac 365 ||||| || || ||||| ||||||||||||||||| || || || || |||||||| ||| Sbjct: 372 aaccctgattccaacacactcatcagcgacacgaccactgtgatctgtcttgatgattac 431 Query: 366 cattccttgga 376 ||||| ||||| Sbjct: 432 cattctttgga 442 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 429 gactttgatctcatgtatgagcaagt 454 |||||||||||||||||||||||||| Sbjct: 495 gactttgatctcatgtatgagcaagt 520
>gb|AC074309.4|AC074309 Arabidopsis thaliana chromosome 1 BAC T12O21 genomic sequence, complete sequence Length = 75298 Score = 85.7 bits (43), Expect = 1e-13 Identities = 109/131 (83%) Strand = Plus / Minus Query: 246 accttcatgcgccggctcaccagcgtgtttggaggtgctgcagagccacccaagggcggc 305 ||||| ||||| ||||||||||||| ||||| || ||||| ||||||| || ||||| Sbjct: 7996 acctttatgcggaggctcaccagcgtctttggtggcgctgctaagccaccaaaaggcggg 7937 Query: 306 aacccagactcgaacacgctcatcagcgacacgacgacggtcatatgccttgatgactac 365 ||||| || || ||||| ||||||||||||||||| || || || || |||||||| ||| Sbjct: 7936 aaccctgattccaacacactcatcagcgacacgaccactgtgatctgtcttgatgattac 7877 Query: 366 cattccttgga 376 ||||| ||||| Sbjct: 7876 cattctttgga 7866 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Minus Query: 429 gactttgatctcatgtatgagcaagt 454 |||||||||||||||||||||||||| Sbjct: 7813 gactttgatctcatgtatgagcaagt 7788
>gb|AY084576.1| Arabidopsis thaliana clone 11226 mRNA, complete sequence Length = 1517 Score = 85.7 bits (43), Expect = 1e-13 Identities = 109/131 (83%) Strand = Plus / Plus Query: 246 accttcatgcgccggctcaccagcgtgtttggaggtgctgcagagccacccaagggcggc 305 ||||| ||||| ||||||||||||| ||||| || ||||| ||||||| || ||||| Sbjct: 302 acctttatgcggaggctcaccagcgtctttggtggcgctgctaagccaccaaaaggcggg 361 Query: 306 aacccagactcgaacacgctcatcagcgacacgacgacggtcatatgccttgatgactac 365 ||||| || || ||||| ||||||||||||||||| || || || || |||||||| ||| Sbjct: 362 aaccctgattccaacacactcatcagcgacacgaccactgtgatctgtcttgatgattac 421 Query: 366 cattccttgga 376 ||||| ||||| Sbjct: 422 cattctttgga 432 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 429 gactttgatctcatgtatgagcaagt 454 |||||||||||||||||||||||||| Sbjct: 485 gactttgatctcatgtatgagcaagt 510
>gb|DQ226798.1| Boechera divaricarpa isolate SLW-B-C10 mRNA sequence Length = 517 Score = 81.8 bits (41), Expect = 2e-12 Identities = 101/121 (83%) Strand = Plus / Plus Query: 259 ggctcaccagcgtgtttggaggtgctgcagagccacccaagggcggcaacccagactcga 318 |||| |||||||| || || |||||||| ||||||| || ||||| ||||| || || | Sbjct: 14 ggcttaccagcgtcttcggtggtgctgccaagccaccaaaaggcgggaaccctgattcca 73 Query: 319 acacgctcatcagcgacacgacgacggtcatatgccttgatgactaccattccttggaca 378 |||| ||||||||||||||||| || || || || ||||| || |||||||||||||||| Sbjct: 74 acacactcatcagcgacacgaccaccgtgatctgtcttgacgattaccattccttggaca 133 Query: 379 g 379 | Sbjct: 134 g 134 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 429 gactttgatctcatgtatgagcaagt 454 |||||||||||||||||||||||||| Sbjct: 184 gactttgatctcatgtatgagcaagt 209
>emb|Y11248.1|PSPHOBKIN P.sativum mRNA for phosphoribulokinase, partial Length = 1313 Score = 75.8 bits (38), Expect = 1e-10 Identities = 146/182 (80%) Strand = Plus / Plus Query: 273 tttggaggtgctgcagagccacccaagggcggcaacccagactcgaacacgctcatcagc 332 |||||||| || ||||||||||| || || || || || || || ||||| || ||||| Sbjct: 89 tttggaggagcagcagagccaccaaaaggtggtaatcctgattctaacacacttatcagt 148 Query: 333 gacacgacgacggtcatatgccttgatgactaccattccttggacagaaccgggaggaag 392 ||||| || || |||||||| | ||||| || ||||| ||||| |||||||| || || Sbjct: 149 gacacaacaactgtcatatgtttggatgattatcattctttggatagaaccggtagaaaa 208 Query: 393 gagaaaggtgtgactgccctggaccccaaggcaaacgactttgatctcatgtatgagcaa 452 ||||||||||| ||||| || || || || || || || ||||||||||||||||| ||| Sbjct: 209 gagaaaggtgttactgcacttgatccaaaagctaatgattttgatctcatgtatgaacaa 268 Query: 453 gt 454 || Sbjct: 269 gt 270
>gb|DQ226963.1| Boechera divaricarpa isolate AD-E7 mRNA sequence Length = 599 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 324 ctcatcagcgacacgacgacggtcatatgccttgatgactaccattccttggacag 379 ||||||||||||||||| || || || || ||||| || ||||||||||||||||| Sbjct: 4 ctcatcagcgacacgaccaccgtgatctgtcttgacgattaccattccttggacag 59 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 429 gactttgatctcatgtatgagcaagt 454 |||||||||||||||||||||||||| Sbjct: 109 gactttgatctcatgtatgagcaagt 134
>gb|AY772250.1| Euglena gracilis chloroplast phosphoribulokinase (PRK) mRNA, complete cds; nuclear gene for chloroplast product Length = 1479 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 225 gactcgggatgtgggaaatccaccttcatgcgccggctcac 265 ||||| ||||||||||| |||||||||||||| || ||||| Sbjct: 361 gactcaggatgtgggaagtccaccttcatgcggcgtctcac 401
>gb|AF173671.1|AF173671 Beta vulgaris clone PRKRTUNI phosphoribulokinase (Prk) mRNA, partial cds Length = 814 Score = 48.1 bits (24), Expect = 0.025 Identities = 39/44 (88%) Strand = Plus / Plus Query: 270 gtgtttggaggtgctgcagagccacccaagggcggcaacccaga 313 |||||||||||||| ||||| ||||| ||||| || |||||||| Sbjct: 36 gtgtttggaggtgcagcagaaccaccaaagggaggaaacccaga 79
>gb|M73707.1|CIPPRK Mesembryanthemum crystallinum phosphoribulokinase mRNA, complete CDS Length = 1520 Score = 48.1 bits (24), Expect = 0.025 Identities = 84/104 (80%) Strand = Plus / Plus Query: 357 gatgactaccattccttggacagaaccgggaggaaggagaaaggtgtgactgccctggac 416 ||||| ||||||||| | || || || |||||||| |||||||| || ||||| |||| Sbjct: 433 gatgattaccattcccttgataggacagggaggaaagagaaaggagttactgctttggat 492 Query: 417 cccaaggcaaacgactttgatctcatgtatgagcaagtgaaggc 460 || | || || || ||||| ||||||||||||||||| ||||| Sbjct: 493 ccaagagccaatgattttgacctcatgtatgagcaagttaaggc 536
>gb|AC157560.3| Mus musculus chromosome 15, clone RP24-270I3, complete sequence Length = 157844 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 44 cccacacaccaccacatccct 64 ||||||||||||||||||||| Sbjct: 118087 cccacacaccaccacatccct 118107
>emb|AL034554.8|HS994L9 Human DNA sequence from clone RP5-994L9 on chromosome 20p12.3-13 Contains STS and GSSs, complete sequence Length = 137739 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 98 cttcaggcagaaccaagtcatcctc 122 ||||| ||||||||||||||||||| Sbjct: 109984 cttcaagcagaaccaagtcatcctc 109960
>gb|AY826861.1| Isochrysis galbana clone ISPRK1 chloroplast phosphoribulokinase mRNA, partial cds; nuclear gene for chloroplast product Length = 1432 Score = 42.1 bits (21), Expect = 1.6 Identities = 45/53 (84%) Strand = Plus / Plus Query: 207 gtgattggcctggcagcagactcgggatgtgggaaatccaccttcatgcgccg 259 ||||| || ||||| || |||||||| || || || ||||||||||||||||| Sbjct: 89 gtgatcggtctggcggcggactcgggctgcggcaagtccaccttcatgcgccg 141
>gb|BC086910.1| Mus musculus secretoglobin, family 3A, member 1, transcript variant A, mRNA (cDNA clone MGC:107611 IMAGE:6759656), complete cds Length = 508 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 gaggaaggagaaaggtgtga 405 |||||||||||||||||||| Sbjct: 461 gaggaaggagaaaggtgtga 442
>gb|AF233439.7| Homo sapiens chromosome 8 clones GS1-24F4, CTD-2629I16 map p23.1, complete sequences Length = 231283 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 386 gaggaaggagaaaggtgtga 405 |||||||||||||||||||| Sbjct: 78568 gaggaaggagaaaggtgtga 78587
>gb|AF205406.5| Homo sapiens chromosome 8 clone SCb-633e22 map p23.1, complete sequence Length = 168907 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 386 gaggaaggagaaaggtgtga 405 |||||||||||||||||||| Sbjct: 31267 gaggaaggagaaaggtgtga 31286
>gb|AF298854.5| Homo sapiens chromosome 8 clone SCb-207i3 map p23.1, complete sequence Length = 110283 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 386 gaggaaggagaaaggtgtga 405 |||||||||||||||||||| Sbjct: 41295 gaggaaggagaaaggtgtga 41314
>gb|AC121932.2| Mus musculus BAC clone RP24-205N24 from 17, complete sequence Length = 152782 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 387 aggaaggagaaaggtgtgac 406 |||||||||||||||||||| Sbjct: 62792 aggaaggagaaaggtgtgac 62811
>gb|DQ400445.1| Ictalurus punctatus immunoglobulin heavy chain gene locus, partial sequence and unknown gene Length = 257153 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 aagcagcaggaggagtacca 153 |||||||||||||||||||| Sbjct: 42522 aagcagcaggaggagtacca 42503
>emb|X82631.1|CPIIPHA2 C.porcellus mRNA for typeII phospholipase A2 Length = 760 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 accagaagcagcaggaggag 148 |||||||||||||||||||| Sbjct: 79 accagaagcagcaggaggag 60
>gb|AC164171.5| Mus musculus 10 BAC RP24-574G7 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 147660 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 cagcccacacaccaccacat 60 |||||||||||||||||||| Sbjct: 63745 cagcccacacaccaccacat 63726
>emb|AL606479.16| Mouse DNA sequence from clone RP23-10G21 on chromosome 11 Contains the Scgb3a1 gene for family 3A member 1 secretoglobin, gene A230103N10Rik, a ribosomal protein L30 (Rpl30) pseudogene, a ribosomal protein S10 (Rps10) pseudogene, a ribosomal protein L29 (Rpl29) pseudogene, the Gfpt2 gene for glutamine fructose-6-phosphate transaminase 2, the Mapk9 gene for mitogen activated protein kinase 9, the 5' end of gene 9130006A14Rik and four CpG islands, complete sequence Length = 254981 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 gaggaaggagaaaggtgtga 405 |||||||||||||||||||| Sbjct: 4264 gaggaaggagaaaggtgtga 4245
>emb|AJ720375.1| Gallus gallus mRNA for hypothetical protein, clone 16f17 Length = 4963 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 aggagtaccacgaggcatgg 163 |||||||||||||||||||| Sbjct: 773 aggagtaccacgaggcatgg 754
>gb|AC079018.10| Homo sapiens chromosome 8, clone RP11-161B1, complete sequence Length = 168702 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 386 gaggaaggagaaaggtgtga 405 |||||||||||||||||||| Sbjct: 12621 gaggaaggagaaaggtgtga 12640
>dbj|AK127831.1| Homo sapiens cDNA FLJ45934 fis, clone PLACE7003684 Length = 3658 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 386 gaggaaggagaaaggtgtga 405 |||||||||||||||||||| Sbjct: 3560 gaggaaggagaaaggtgtga 3579
>dbj|AK134202.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched library, clone:5830472K17 product:hypothetical protein, full insert sequence Length = 2783 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 caatagtgattggcctggca 221 |||||||||||||||||||| Sbjct: 892 caatagtgattggcctggca 873
>gb|AC068721.4| Homo sapiens BAC clone RP11-545L5 from 4, complete sequence Length = 177270 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 cagaagcagcaggaggagta 150 |||||||||||||||||||| Sbjct: 137439 cagaagcagcaggaggagta 137458
>gb|AC153823.5| Mus musculus 10 BAC RP23-11M21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 210101 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 ccaagtcatcctcttcacaa 129 |||||||||||||||||||| Sbjct: 79373 ccaagtcatcctcttcacaa 79392
>emb|BX930986.2| Gallus gallus finished cDNA, clone ChEST68e2 Length = 3166 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 aggagtaccacgaggcatgg 163 |||||||||||||||||||| Sbjct: 737 aggagtaccacgaggcatgg 718
>dbj|AK003988.1| Mus musculus 18-day embryo whole body cDNA, RIKEN full-length enriched library, clone:1110030K16 product:uteroglobin related protein 2, full insert sequence Length = 495 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 gaggaaggagaaaggtgtga 405 |||||||||||||||||||| Sbjct: 466 gaggaaggagaaaggtgtga 447
>emb|Y08610.2|OSPRK Odontella sinensis mRNA for phosphoribulokinase (prk gene) Length = 1258 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 243 tccaccttcatgcgccggctcacc 266 ||||||||||||||||| |||||| Sbjct: 212 tccaccttcatgcgccgcctcacc 235
>gb|AF313457.1| Mus musculus UGRP2 type B mRNA, complete cds Length = 630 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 gaggaaggagaaaggtgtga 405 |||||||||||||||||||| Sbjct: 569 gaggaaggagaaaggtgtga 550
>gb|AF313456.1| Mus musculus UGRP2 type A mRNA, complete cds Length = 525 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 gaggaaggagaaaggtgtga 405 |||||||||||||||||||| Sbjct: 464 gaggaaggagaaaggtgtga 445
>gb|AC116680.21| Mus musculus chromosome 12, clone RP23-476M16, complete sequence Length = 215303 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 caatagtgattggcctggca 221 |||||||||||||||||||| Sbjct: 45836 caatagtgattggcctggca 45817
>emb|CT010478.15| Mouse DNA sequence from clone RP23-356E7 on chromosome 12, complete sequence Length = 190917 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 caatagtgattggcctggca 221 |||||||||||||||||||| Sbjct: 74482 caatagtgattggcctggca 74463
>ref|NM_054037.1| Mus musculus secretoglobin, family 3A, member 1 (Scgb3a1), transcript variant A, mRNA Length = 525 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 gaggaaggagaaaggtgtga 405 |||||||||||||||||||| Sbjct: 464 gaggaaggagaaaggtgtga 445
>ref|NM_170727.1| Mus musculus secretoglobin, family 3A, member 1 (Scgb3a1), transcript variant B, mRNA Length = 630 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 gaggaaggagaaaggtgtga 405 |||||||||||||||||||| Sbjct: 569 gaggaaggagaaaggtgtga 550 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,086,337 Number of Sequences: 3902068 Number of extensions: 4086337 Number of successful extensions: 94211 Number of sequences better than 10.0: 56 Number of HSP's better than 10.0 without gapping: 56 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 94065 Number of HSP's gapped (non-prelim): 144 length of query: 460 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 438 effective length of database: 17,147,199,772 effective search space: 7510473500136 effective search space used: 7510473500136 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)