| Clone Name | baal30e19 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ234421.1|HVU234421 Hordeum vulgare partial mRNA; clone cMWG0682 Length = 577 Score = 276 bits (139), Expect = 2e-71 Identities = 157/162 (96%), Gaps = 2/162 (1%) Strand = Plus / Plus Query: 1 cactggacgggcaacctacccaaagtcttcgtgataggcagcgtggtcgccctggcttgc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 112 cactggacgggcaacctacccaaagtcttcgtgataggcagcgtggtcgccctggcttgc 171 Query: 61 accttcgacaaggggctactgaccaaggctctcgtgttcggaacggcaagaaggtttgca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 172 accttcgacaaggggctactgaccaaggctctcgtgttcggaacggcaagaaggtttgca 231 Query: 121 ggacccagggaagaagataggaacccaaacatccgcgcctat 162 ||||| ||||||||||||| | |||||||||||||||||| Sbjct: 232 ggacc--aggaagaagatagggaaccaaacatccgcgcctat 271
>gb|BT016568.1| Zea mays clone Contig401 mRNA sequence Length = 845 Score = 48.1 bits (24), Expect = 0.008 Identities = 24/24 (100%) Strand = Plus / Plus Query: 46 gtcgccctggcttgcaccttcgac 69 |||||||||||||||||||||||| Sbjct: 136 gtcgccctggcttgcaccttcgac 159
>gb|DQ427308.1| Sorghum propinquum locus CSU535 genomic sequence Length = 696 Score = 42.1 bits (21), Expect = 0.50 Identities = 63/77 (81%) Strand = Plus / Plus Query: 46 gtcgccctggcttgcaccttcgacaaggggctactgaccaaggctctcgtgttcggaacg 105 |||||||||||||||||||| ||| || | |||||||||| || | ||||| ||| Sbjct: 76 gtcgccctggcttgcacctttgacggtggattgttgaccaaggccgtcatattcggcacg 135 Query: 106 gcaagaaggtttgcagg 122 || |||||||||||||| Sbjct: 136 gcgagaaggtttgcagg 152
>gb|DQ427307.1| Sorghum bicolor voucher PI585454 locus CSU535 genomic sequence Length = 689 Score = 42.1 bits (21), Expect = 0.50 Identities = 63/77 (81%) Strand = Plus / Plus Query: 46 gtcgccctggcttgcaccttcgacaaggggctactgaccaaggctctcgtgttcggaacg 105 |||||||||||||||||||| ||| || | |||||||||| || | ||||| ||| Sbjct: 76 gtcgccctggcttgcacctttgacggtggattgttgaccaaggccgtcatattcggcacg 135 Query: 106 gcaagaaggtttgcagg 122 || |||||||||||||| Sbjct: 136 gcgagaaggtttgcagg 152
>gb|DQ427306.1| Sorghum bicolor voucher PI267539 locus CSU535 genomic sequence Length = 689 Score = 42.1 bits (21), Expect = 0.50 Identities = 63/77 (81%) Strand = Plus / Plus Query: 46 gtcgccctggcttgcaccttcgacaaggggctactgaccaaggctctcgtgttcggaacg 105 |||||||||||||||||||| ||| || | |||||||||| || | ||||| ||| Sbjct: 76 gtcgccctggcttgcacctttgacggtggattgttgaccaaggccgtcatattcggcacg 135 Query: 106 gcaagaaggtttgcagg 122 || |||||||||||||| Sbjct: 136 gcgagaaggtttgcagg 152
>gb|DQ427305.1| Sorghum bicolor voucher PI267408 locus CSU535 genomic sequence Length = 689 Score = 42.1 bits (21), Expect = 0.50 Identities = 63/77 (81%) Strand = Plus / Plus Query: 46 gtcgccctggcttgcaccttcgacaaggggctactgaccaaggctctcgtgttcggaacg 105 |||||||||||||||||||| ||| || | |||||||||| || | ||||| ||| Sbjct: 76 gtcgccctggcttgcacctttgacggtggattgttgaccaaggccgtcatattcggcacg 135 Query: 106 gcaagaaggtttgcagg 122 || |||||||||||||| Sbjct: 136 gcgagaaggtttgcagg 152
>gb|DQ427304.1| Sorghum bicolor voucher PI221607 locus CSU535 genomic sequence Length = 689 Score = 42.1 bits (21), Expect = 0.50 Identities = 63/77 (81%) Strand = Plus / Plus Query: 46 gtcgccctggcttgcaccttcgacaaggggctactgaccaaggctctcgtgttcggaacg 105 |||||||||||||||||||| ||| || | |||||||||| || | ||||| ||| Sbjct: 76 gtcgccctggcttgcacctttgacggtggattgttgaccaaggccgtcatattcggcacg 135 Query: 106 gcaagaaggtttgcagg 122 || |||||||||||||| Sbjct: 136 gcgagaaggtttgcagg 152
>gb|DQ427303.1| Sorghum bicolor voucher PI152702 locus CSU535 genomic sequence Length = 689 Score = 42.1 bits (21), Expect = 0.50 Identities = 63/77 (81%) Strand = Plus / Plus Query: 46 gtcgccctggcttgcaccttcgacaaggggctactgaccaaggctctcgtgttcggaacg 105 |||||||||||||||||||| ||| || | |||||||||| || | ||||| ||| Sbjct: 76 gtcgccctggcttgcacctttgacggtggattgttgaccaaggccgtcatattcggcacg 135 Query: 106 gcaagaaggtttgcagg 122 || |||||||||||||| Sbjct: 136 gcgagaaggtttgcagg 152
>gb|DQ427302.1| Sorghum bicolor voucher NSL92371 locus CSU535 genomic sequence Length = 689 Score = 42.1 bits (21), Expect = 0.50 Identities = 63/77 (81%) Strand = Plus / Plus Query: 46 gtcgccctggcttgcaccttcgacaaggggctactgaccaaggctctcgtgttcggaacg 105 |||||||||||||||||||| ||| || | |||||||||| || | ||||| ||| Sbjct: 76 gtcgccctggcttgcacctttgacggtggattgttgaccaaggccgtcatattcggcacg 135 Query: 106 gcaagaaggtttgcagg 122 || |||||||||||||| Sbjct: 136 gcgagaaggtttgcagg 152
>gb|DQ427301.1| Sorghum bicolor voucher NSL87902b locus CSU535 genomic sequence Length = 689 Score = 42.1 bits (21), Expect = 0.50 Identities = 63/77 (81%) Strand = Plus / Plus Query: 46 gtcgccctggcttgcaccttcgacaaggggctactgaccaaggctctcgtgttcggaacg 105 |||||||||||||||||||| ||| || | |||||||||| || | ||||| ||| Sbjct: 76 gtcgccctggcttgcacctttgacggtggattgttgaccaaggccgtcatattcggcacg 135 Query: 106 gcaagaaggtttgcagg 122 || |||||||||||||| Sbjct: 136 gcgagaaggtttgcagg 152
>gb|DQ427300.1| Sorghum bicolor voucher NSL87902a locus CSU535 genomic sequence Length = 689 Score = 42.1 bits (21), Expect = 0.50 Identities = 63/77 (81%) Strand = Plus / Plus Query: 46 gtcgccctggcttgcaccttcgacaaggggctactgaccaaggctctcgtgttcggaacg 105 |||||||||||||||||||| ||| || | |||||||||| || | ||||| ||| Sbjct: 76 gtcgccctggcttgcacctttgacggtggattgttgaccaaggccgtcatattcggcacg 135 Query: 106 gcaagaaggtttgcagg 122 || |||||||||||||| Sbjct: 136 gcgagaaggtttgcagg 152
>gb|DQ427299.1| Sorghum bicolor voucher NSL87666 locus CSU535 genomic sequence Length = 689 Score = 42.1 bits (21), Expect = 0.50 Identities = 63/77 (81%) Strand = Plus / Plus Query: 46 gtcgccctggcttgcaccttcgacaaggggctactgaccaaggctctcgtgttcggaacg 105 |||||||||||||||||||| ||| || | |||||||||| || | ||||| ||| Sbjct: 76 gtcgccctggcttgcacctttgacggtggattgttgaccaaggccgtcatattcggcacg 135 Query: 106 gcaagaaggtttgcagg 122 || |||||||||||||| Sbjct: 136 gcgagaaggtttgcagg 152
>gb|DQ427298.1| Sorghum bicolor voucher NSL77217 locus CSU535 genomic sequence Length = 689 Score = 42.1 bits (21), Expect = 0.50 Identities = 63/77 (81%) Strand = Plus / Plus Query: 46 gtcgccctggcttgcaccttcgacaaggggctactgaccaaggctctcgtgttcggaacg 105 |||||||||||||||||||| ||| || | |||||||||| || | ||||| ||| Sbjct: 76 gtcgccctggcttgcacctttgacggtggattgttgaccaaggccgtcatattcggcacg 135 Query: 106 gcaagaaggtttgcagg 122 || |||||||||||||| Sbjct: 136 gcgagaaggtttgcagg 152
>gb|DQ427297.1| Sorghum bicolor voucher NSL77034 locus CSU535 genomic sequence Length = 689 Score = 42.1 bits (21), Expect = 0.50 Identities = 63/77 (81%) Strand = Plus / Plus Query: 46 gtcgccctggcttgcaccttcgacaaggggctactgaccaaggctctcgtgttcggaacg 105 |||||||||||||||||||| ||| || | |||||||||| || | ||||| ||| Sbjct: 76 gtcgccctggcttgcacctttgacggtggattgttgaccaaggccgtcatattcggcacg 135 Query: 106 gcaagaaggtttgcagg 122 || |||||||||||||| Sbjct: 136 gcgagaaggtttgcagg 152
>gb|DQ427296.1| Sorghum bicolor voucher NSL56174 locus CSU535 genomic sequence Length = 689 Score = 42.1 bits (21), Expect = 0.50 Identities = 63/77 (81%) Strand = Plus / Plus Query: 46 gtcgccctggcttgcaccttcgacaaggggctactgaccaaggctctcgtgttcggaacg 105 |||||||||||||||||||| ||| || | |||||||||| || | ||||| ||| Sbjct: 76 gtcgccctggcttgcacctttgacggtggattgttgaccaaggccgtcatattcggcacg 135 Query: 106 gcaagaaggtttgcagg 122 || |||||||||||||| Sbjct: 136 gcgagaaggtttgcagg 152
>gb|DQ427295.1| Sorghum bicolor voucher NSL56003 locus CSU535 genomic sequence Length = 689 Score = 42.1 bits (21), Expect = 0.50 Identities = 63/77 (81%) Strand = Plus / Plus Query: 46 gtcgccctggcttgcaccttcgacaaggggctactgaccaaggctctcgtgttcggaacg 105 |||||||||||||||||||| ||| || | |||||||||| || | ||||| ||| Sbjct: 76 gtcgccctggcttgcacctttgacggtggattgttgaccaaggccgtcatattcggcacg 135 Query: 106 gcaagaaggtttgcagg 122 || |||||||||||||| Sbjct: 136 gcgagaaggtttgcagg 152
>gb|DQ427294.1| Sorghum bicolor voucher NSL55243 locus CSU535 genomic sequence Length = 689 Score = 42.1 bits (21), Expect = 0.50 Identities = 63/77 (81%) Strand = Plus / Plus Query: 46 gtcgccctggcttgcaccttcgacaaggggctactgaccaaggctctcgtgttcggaacg 105 |||||||||||||||||||| ||| || | |||||||||| || | ||||| ||| Sbjct: 76 gtcgccctggcttgcacctttgacggtggattgttgaccaaggccgtcatattcggcacg 135 Query: 106 gcaagaaggtttgcagg 122 || |||||||||||||| Sbjct: 136 gcgagaaggtttgcagg 152
>gb|DQ427293.1| Sorghum bicolor voucher NSL51365 locus CSU535 genomic sequence Length = 689 Score = 42.1 bits (21), Expect = 0.50 Identities = 63/77 (81%) Strand = Plus / Plus Query: 46 gtcgccctggcttgcaccttcgacaaggggctactgaccaaggctctcgtgttcggaacg 105 |||||||||||||||||||| ||| || | |||||||||| || | ||||| ||| Sbjct: 76 gtcgccctggcttgcacctttgacggtggattgttgaccaaggccgtcatattcggcacg 135 Query: 106 gcaagaaggtttgcagg 122 || |||||||||||||| Sbjct: 136 gcgagaaggtttgcagg 152
>gb|DQ427292.1| Sorghum bicolor voucher NSL51030 locus CSU535 genomic sequence Length = 689 Score = 42.1 bits (21), Expect = 0.50 Identities = 63/77 (81%) Strand = Plus / Plus Query: 46 gtcgccctggcttgcaccttcgacaaggggctactgaccaaggctctcgtgttcggaacg 105 |||||||||||||||||||| ||| || | |||||||||| || | ||||| ||| Sbjct: 76 gtcgccctggcttgcacctttgacggtggattgttgaccaaggccgtcatattcggcacg 135 Query: 106 gcaagaaggtttgcagg 122 || |||||||||||||| Sbjct: 136 gcgagaaggtttgcagg 152
>gb|DQ427291.1| Sorghum bicolor voucher NSL50875 locus CSU535 genomic sequence Length = 689 Score = 42.1 bits (21), Expect = 0.50 Identities = 63/77 (81%) Strand = Plus / Plus Query: 46 gtcgccctggcttgcaccttcgacaaggggctactgaccaaggctctcgtgttcggaacg 105 |||||||||||||||||||| ||| || | |||||||||| || | ||||| ||| Sbjct: 76 gtcgccctggcttgcacctttgacggtggattgttgaccaaggccgtcatattcggcacg 135 Query: 106 gcaagaaggtttgcagg 122 || |||||||||||||| Sbjct: 136 gcgagaaggtttgcagg 152
>gb|DQ427290.1| Sorghum bicolor voucher BTx623 locus CSU535 genomic sequence Length = 689 Score = 42.1 bits (21), Expect = 0.50 Identities = 63/77 (81%) Strand = Plus / Plus Query: 46 gtcgccctggcttgcaccttcgacaaggggctactgaccaaggctctcgtgttcggaacg 105 |||||||||||||||||||| ||| || | |||||||||| || | ||||| ||| Sbjct: 76 gtcgccctggcttgcacctttgacggtggattgttgaccaaggccgtcatattcggcacg 135 Query: 106 gcaagaaggtttgcagg 122 || |||||||||||||| Sbjct: 136 gcgagaaggtttgcagg 152
>ref|NM_064268.1| Caenorhabditis elegans Serpentine Receptor, class H family member (srh-67) (srh-67) mRNA, complete cds Length = 1026 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 ggcaagaaggtttgcaggac 124 |||||||||||||||||||| Sbjct: 797 ggcaagaaggtttgcaggac 778
>ref|NM_064267.1| Caenorhabditis elegans Serpentine Receptor, class H family member (srh-68) (srh-68) mRNA, complete cds Length = 1026 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 ggcaagaaggtttgcaggac 124 |||||||||||||||||||| Sbjct: 797 ggcaagaaggtttgcaggac 778
>gb|AY107844.1| Zea mays PCO146552 mRNA sequence Length = 823 Score = 40.1 bits (20), Expect = 2.0 Identities = 32/36 (88%) Strand = Plus / Plus Query: 58 tgcaccttcgacaaggggctactgaccaaggctctc 93 |||||| | ||| ||||||| ||||||||||||||| Sbjct: 421 tgcacccttgaccaggggctcctgaccaaggctctc 456
>emb|Z81124.1|CET21B4 Caenorhabditis elegans Cosmid T21B4, complete sequence Length = 37797 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 ggcaagaaggtttgcaggac 124 |||||||||||||||||||| Sbjct: 19787 ggcaagaaggtttgcaggac 19768 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 ggcaagaaggtttgcaggac 124 |||||||||||||||||||| Sbjct: 18104 ggcaagaaggtttgcaggac 18085
>gb|AC168051.3| Mus musculus BAC clone RP23-169M5 from chromosome 8, complete sequence Length = 222981 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 caggacccagggaagaagat 138 |||||||||||||||||||| Sbjct: 106797 caggacccagggaagaagat 106778
>ref|XM_586934.2| PREDICTED: Bos taurus similar to General transcription factor 3C polypeptide 1 (Transcription factor IIIC-alpha subunit) (TF3C-alpha) (TFIIIC 220 kDa subunit) (TFIIIC220) (TFIIIC box B-binding subunit), transcript variant 1 (LOC509874), mRNA Length = 7105 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 120 aggacccagggaagaagat 138 ||||||||||||||||||| Sbjct: 3614 aggacccagggaagaagat 3632
>ref|XM_877865.1| PREDICTED: Bos taurus similar to General transcription factor 3C polypeptide 1 (Transcription factor IIIC-alpha subunit) (TF3C-alpha) (TFIIIC 220 kDa subunit) (TFIIIC220) (TFIIIC box B-binding subunit), transcript variant 2 (LOC509874), mRNA Length = 7132 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 120 aggacccagggaagaagat 138 ||||||||||||||||||| Sbjct: 3614 aggacccagggaagaagat 3632
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 101 gaacggcaagaaggtttgc 119 ||||||||||||||||||| Sbjct: 3994257 gaacggcaagaaggtttgc 3994239
>gb|AC160760.4| Mus musculus BAC clone RP23-449G13 from chromosome 17, complete sequence Length = 174449 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 113 ggtttgcaggacccaggga 131 ||||||||||||||||||| Sbjct: 68209 ggtttgcaggacccaggga 68227
>gb|AC018767.3|AC018767 Homo sapiens chromosome 16 clone RP11-279O17, complete sequence Length = 159857 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 66 cgacaaggggctactgacc 84 ||||||||||||||||||| Sbjct: 85711 cgacaaggggctactgacc 85729
>gb|AC132312.4| Mus musculus BAC clone RP24-298A20 from 12, complete sequence Length = 177464 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 119 caggacccagggaagaaga 137 ||||||||||||||||||| Sbjct: 55017 caggacccagggaagaaga 55035
>gb|AC134914.5| Mus musculus BAC clone RP23-227C5 from 9, complete sequence Length = 206831 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 127 agggaagaagataggaacc 145 ||||||||||||||||||| Sbjct: 58378 agggaagaagataggaacc 58396
>gb|AC141637.3| Mus musculus BAC clone RP23-424D5 from 9, complete sequence Length = 183859 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 127 agggaagaagataggaacc 145 ||||||||||||||||||| Sbjct: 19461 agggaagaagataggaacc 19443
>dbj|AP006114.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT43M15, TM0198a, complete sequence Length = 75051 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 131 aagaagataggaacccaaa 149 ||||||||||||||||||| Sbjct: 25103 aagaagataggaacccaaa 25085
>gb|AC160112.2| Mus musculus BAC clone RP24-80F17 from chromosome 12, complete sequence Length = 230823 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 119 caggacccagggaagaaga 137 ||||||||||||||||||| Sbjct: 8340 caggacccagggaagaaga 8322
>gb|AC136457.3| Mus musculus BAC clone RP23-76G19 from chromosome 13, complete sequence Length = 204369 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 133 gaagataggaacccaaaca 151 ||||||||||||||||||| Sbjct: 176795 gaagataggaacccaaaca 176813
>emb|AL731783.10| Mouse DNA sequence from clone RP23-124E18 on chromosome 2, complete sequence Length = 207209 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 125 ccagggaagaagataggaa 143 ||||||||||||||||||| Sbjct: 161224 ccagggaagaagataggaa 161242 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 923,439 Number of Sequences: 3902068 Number of extensions: 923439 Number of successful extensions: 57649 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57562 Number of HSP's gapped (non-prelim): 86 length of query: 162 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 140 effective length of database: 17,147,199,772 effective search space: 2400607968080 effective search space used: 2400607968080 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)