ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal30e08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PICO_DROME (Q9V7S5) Putative inorganic phosphate cotransporter 34 0.14
2SUFS_WIGBR (Q8D2J7) Cysteine desulfurase (EC 2.8.1.7) (Selenocys... 29 5.8
3PICO_DROAN (O61369) Putative inorganic phosphate cotransporter 29 5.8

>PICO_DROME (Q9V7S5) Putative inorganic phosphate cotransporter|
          Length = 529

 Score = 34.3 bits (77), Expect = 0.14
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 129 FRTWVHQDPSCHPTLSPKADQALTGXXWGRVLAQVXPSP 13
           F  +VH+DPS HPT+  +  + +    WG  + +  P P
Sbjct: 248 FLIFVHEDPSSHPTIDEREKKYINDSLWGTDVVKSPPIP 286



to top

>SUFS_WIGBR (Q8D2J7) Cysteine desulfurase (EC 2.8.1.7) (Selenocysteine lyase)|
           (EC 4.4.1.16) (Selenocysteine reductase) (Selenocysteine
           beta-lyase) (SCL)
          Length = 410

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -2

Query: 376 ICTYINSDLENEVYLVALTCANHTFPSTGTSETFLLEQDQMGIQIMEHH 230
           I  +IN+  ++E+  V  T       +    ETF+ + D + I  MEHH
Sbjct: 76  IAKFINAKSDSEIIFVKGTTEGINLVANTWGETFIKKGDNIVITQMEHH 124



to top

>PICO_DROAN (O61369) Putative inorganic phosphate cotransporter|
          Length = 483

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -3

Query: 129 FRTWVHQDPSCHPTLSPKADQALTGXXWGRVLAQVXPSP 13
           F  +V++DPS HP +  +  + +    WG  + +  P P
Sbjct: 202 FLIFVYEDPSTHPKIDEREKKYINESLWGTDVIKSPPIP 240


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,485,517
Number of Sequences: 219361
Number of extensions: 1189134
Number of successful extensions: 2438
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2438
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top