ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal30e08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC135568.3| Oryza sativa (japonica cultivar-group) chromosome... 84 4e-13
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 84 4e-13
3gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 84 4e-13
4dbj|AK072911.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 7e-12
5emb|Z71265.1|CEM05B5 Caenorhabditis elegans Cosmid M05B5, comple... 46 0.095
6emb|BX547933.13| Zebrafish DNA sequence from clone DKEY-87L9 in ... 46 0.095
7gb|CP000114.1| Streptococcus agalactiae A909, complete genome 44 0.38
8emb|AL353649.12| Human DNA sequence from clone RP11-30P16 on chr... 44 0.38
9gb|AE014218.1| Streptococcus agalactiae 2603V/R section 28 of 10... 44 0.38
10gb|AC006035.2| Homo sapiens BAC clone RP11-196O16 from 7, comple... 42 1.5
11ref|XM_625855.1| Cryptosporidium parvum Iowa II hypothetical pro... 42 1.5
12gb|AC147078.2| Pan troglodytes BAC clone RP43-180L22 from 7, com... 40 5.9
13gb|AC116387.7| Mus musculus chromosome 18, clone RP23-37P9, comp... 40 5.9
14gb|AC034148.9| Homo sapiens BAC clone RP11-155B1 from 7, complet... 40 5.9
15emb|CT025361.2| Xenopus tropicalis finished cDNA, clone TNeu099b15 40 5.9
16gb|AC113974.9| Mus musculus chromosome 18, clone RP23-140D3, com... 40 5.9
17gb|AC090220.13| Homo sapiens chromosome 18, clone RP11-712P20, c... 40 5.9
18gb|AC147959.18| Medicago truncatula clone mth2-11c16, complete s... 40 5.9
19gb|CP000249.1| Frankia sp. CcI3, complete genome 40 5.9
20gb|AC129933.13| Mus musculus chromosome 1, clone RP23-234P14, co... 40 5.9
21gb|AC022379.2|AC022379 Homo sapiens chromosome 3 clone 996C6 map... 40 5.9
22gb|AC023471.4|AC023471 Homo sapiens chromosome 3 clone RP11-126L... 40 5.9
23gb|AC024910.5| Homo sapiens chromosome 3 clone RP11-380A22 map 3... 40 5.9
24dbj|AP007297.1| Lotus japonicus genomic DNA, clone:LjT02G13, TM0... 40 5.9
25dbj|AP006378.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 5.9
26dbj|AP006074.1| Lotus japonicus genomic DNA, chromosome 3, clone... 40 5.9
27dbj|AP004958.1| Lotus japonicus genomic DNA, chromosome 3, clone... 40 5.9
28gb|AC027128.5| Homo sapiens chromosome 3 clone RP11-627C1 map 3p... 40 5.9 
>gb|AC135568.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0078F08, complete sequence
          Length = 165440

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 98/114 (85%), Gaps = 2/114 (1%)
 Strand = Plus / Plus

                                                                         
Query: 25    aacctgagcaagcactcttccccagnagnacccggtcagcgcctggtcagccttgggtga 84
             |||||||||||||||||||| || | || ||| | ||||| ||||||||||| |||||||
Sbjct: 87968 aacctgagcaagcactcttctcctg-ag-accagatcagcacctggtcagccatgggtga 88025

                                                                   
Query: 85    gagggtgggatgacaagaggggtcttgatggacccaagtacggaaaccagtgat 138
             ||||||||||||||||| | ||  |||| ||||| ||||| ||||| |||||||
Sbjct: 88026 gagggtgggatgacaagcgaggcattgaaggaccaaagtatggaaatcagtgat 88079
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 98/114 (85%), Gaps = 2/114 (1%)
 Strand = Plus / Plus

                                                                            
Query: 25       aacctgagcaagcactcttccccagnagnacccggtcagcgcctggtcagccttgggtga 84
                |||||||||||||||||||| || | || ||| | ||||| ||||||||||| |||||||
Sbjct: 18508653 aacctgagcaagcactcttctcctg-ag-accagatcagcacctggtcagccatgggtga 18508710

                                                                      
Query: 85       gagggtgggatgacaagaggggtcttgatggacccaagtacggaaaccagtgat 138
                ||||||||||||||||| | ||  |||| ||||| ||||| ||||| |||||||
Sbjct: 18508711 gagggtgggatgacaagcgaggcattgaaggaccaaagtatggaaatcagtgat 18508764
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 98/114 (85%), Gaps = 2/114 (1%)
 Strand = Plus / Plus

                                                                            
Query: 25       aacctgagcaagcactcttccccagnagnacccggtcagcgcctggtcagccttgggtga 84
                |||||||||||||||||||| || | || ||| | ||||| ||||||||||| |||||||
Sbjct: 18668054 aacctgagcaagcactcttctcctg-ag-accagatcagcacctggtcagccatgggtga 18668111

                                                                      
Query: 85       gagggtgggatgacaagaggggtcttgatggacccaagtacggaaaccagtgat 138
                ||||||||||||||||| | ||  |||| ||||| ||||| ||||| |||||||
Sbjct: 18668112 gagggtgggatgacaagcgaggcattgaaggaccaaagtatggaaatcagtgat 18668165
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>dbj|AK072911.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150D09, full
           insert sequence
          Length = 835

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 96/114 (84%), Gaps = 2/114 (1%)
 Strand = Plus / Plus

                                                                       
Query: 25  aacctgagcaagcactcttccccagnagnacccggtcagcgcctggtcagccttgggtga 84
           |||||||||||||||||||| || |  | ||| | ||||| ||||||||||| |||||||
Sbjct: 501 aacctgagcaagcactcttctcctg--ggaccagatcagcacctggtcagccatgggtga 558

                                                                 
Query: 85  gagggtgggatgacaagaggggtcttgatggacccaagtacggaaaccagtgat 138
           ||||||||||||||||| | ||  |||| || || ||||| ||||| |||||||
Sbjct: 559 gagggtgggatgacaagcgaggcattgaagggccaaagtatggaaatcagtgat 612
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>emb|Z71265.1|CEM05B5 Caenorhabditis elegans Cosmid M05B5, complete sequence
          Length = 19144

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 276 aaggtttcacttgttcccgttgagggaaatg 306
           ||||||||||||||||| ||| |||||||||
Sbjct: 389 aaggtttcacttgttccagttaagggaaatg 419
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>emb|BX547933.13| Zebrafish DNA sequence from clone DKEY-87L9 in linkage group 2, complete
              sequence
          Length = 177199

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 397    atttgataatgtgatgtatgaaa 419
              |||||||||||||||||||||||
Sbjct: 160864 atttgataatgtgatgtatgaaa 160842
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>gb|CP000114.1| Streptococcus agalactiae A909, complete genome
          Length = 2127839

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 394    taaatttgataatgtgatgtat 415
              ||||||||||||||||||||||
Sbjct: 569809 taaatttgataatgtgatgtat 569830
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>emb|AL353649.12| Human DNA sequence from clone RP11-30P16 on chromosome 9, complete
             sequence
          Length = 64791

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 150   aaccattattgcagtcttaaaaataa 175
             ||||||||||||||||||| ||||||
Sbjct: 24018 aaccattattgcagtcttagaaataa 24043
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>gb|AE014218.1| Streptococcus agalactiae 2603V/R section 28 of 100 of the complete
            genome
          Length = 21154

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 394  taaatttgataatgtgatgtat 415
            ||||||||||||||||||||||
Sbjct: 2626 taaatttgataatgtgatgtat 2647
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>gb|AC006035.2| Homo sapiens BAC clone RP11-196O16 from 7, complete sequence
          Length = 182372

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 197    taatgcttgtgtaaataaagc 217
              |||||||||||||||||||||
Sbjct: 151693 taatgcttgtgtaaataaagc 151673
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>ref|XM_625855.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd4_2690),
            partial mRNA
          Length = 5403

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 346  tttctagatctgagtttatgt 366
            |||||||||||||||||||||
Sbjct: 3896 tttctagatctgagtttatgt 3916
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>gb|AC147078.2| Pan troglodytes BAC clone RP43-180L22 from 7, complete sequence
          Length = 217576

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 381    gttgcattttcactaaatttgataatgt 408
              ||||| ||||||||| ||||||||||||
Sbjct: 144471 gttgccttttcactagatttgataatgt 144444
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>gb|AC116387.7| Mus musculus chromosome 18, clone RP23-37P9, complete sequence
          Length = 217116

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 148    gaaaccattattgcagtctt 167
              ||||||||||||||||||||
Sbjct: 112124 gaaaccattattgcagtctt 112143
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>gb|AC034148.9| Homo sapiens BAC clone RP11-155B1 from 7, complete sequence
          Length = 170928

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 381  gttgcattttcactaaatttgataatgt 408
            ||||| ||||||||| ||||||||||||
Sbjct: 1351 gttgccttttcactatatttgataatgt 1324
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>emb|CT025361.2| Xenopus tropicalis finished cDNA, clone TNeu099b15
          Length = 3245

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 223  atggttagtgatgctccatg 242
            ||||||||||||||||||||
Sbjct: 2777 atggttagtgatgctccatg 2758
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>gb|AC113974.9| Mus musculus chromosome 18, clone RP23-140D3, complete sequence
          Length = 270111

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 148   gaaaccattattgcagtctt 167
             ||||||||||||||||||||
Sbjct: 51550 gaaaccattattgcagtctt 51531
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>gb|AC090220.13| Homo sapiens chromosome 18, clone RP11-712P20, complete sequence
          Length = 194334

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 77    ttgggtgagagggtgggatg 96
             ||||||||||||||||||||
Sbjct: 75714 ttgggtgagagggtgggatg 75733
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>gb|AC147959.18| Medicago truncatula clone mth2-11c16, complete sequence
          Length = 132878

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 355   ctgagtttatgtatgtacaa 374
             ||||||||||||||||||||
Sbjct: 50812 ctgagtttatgtatgtacaa 50793
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 57      cggtcagcgcctggtcagcc 76
               ||||||||||||||||||||
Sbjct: 3200401 cggtcagcgcctggtcagcc 3200420
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>gb|AC129933.13| Mus musculus chromosome 1, clone RP23-234P14, complete sequence
          Length = 247595

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 152    ccattattgcagtcttaaaaataa 175
              ||||||||||| ||||||||||||
Sbjct: 106788 ccattattgcattcttaaaaataa 106765
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>gb|AC022379.2|AC022379 Homo sapiens chromosome 3 clone 996C6 map 3p, complete sequence
          Length = 222542

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 67     ctggtcagccttgggtgagagggt 90
              ||||||||||||||| ||||||||
Sbjct: 184922 ctggtcagccttgggagagagggt 184899
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>gb|AC023471.4|AC023471 Homo sapiens chromosome 3 clone RP11-126L9 map 3p, complete sequence
          Length = 192973

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 67    ctggtcagccttgggtgagagggt 90
             ||||||||||||||| ||||||||
Sbjct: 50460 ctggtcagccttgggagagagggt 50437
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>gb|AC024910.5| Homo sapiens chromosome 3 clone RP11-380A22 map 3p, complete sequence
          Length = 207606

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 67     ctggtcagccttgggtgagagggt 90
              ||||||||||||||| ||||||||
Sbjct: 206907 ctggtcagccttgggagagagggt 206884
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>dbj|AP007297.1| Lotus japonicus genomic DNA, clone:LjT02G13, TM0489a, complete sequence
          Length = 72531

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 82    tgagagggtgggatgacaagaggg 105
             ||||||||||||||||| ||||||
Sbjct: 30163 tgagagggtgggatgacgagaggg 30140
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>dbj|AP006378.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT44A10, TM0223,
             complete sequence
          Length = 101752

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 82    tgagagggtgggatgacaagaggg 105
             ||||||||||||||||| ||||||
Sbjct: 99387 tgagagggtgggatgacgagaggg 99410
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>dbj|AP006074.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT40O02, TM0111b,
           complete sequence
          Length = 92724

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 82  tgagagggtgggatgacaagaggg 105
           ||||||||||||||||| ||||||
Sbjct: 65  tgagagggtgggatgacgagaggg 42
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>dbj|AP004958.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT20B10, TM0135,
            complete sequence
          Length = 96988

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 82   tgagagggtgggatgacaagaggg 105
            ||||||||||||||||| ||||||
Sbjct: 3449 tgagagggtgggatgacgagaggg 3472
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>gb|AC027128.5| Homo sapiens chromosome 3 clone RP11-627C1 map 3p, complete sequence
          Length = 175773

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 67     ctggtcagccttgggtgagagggt 90
              ||||||||||||||| ||||||||
Sbjct: 103116 ctggtcagccttgggagagagggt 103139


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,004,212
Number of Sequences: 3902068
Number of extensions: 4004212
Number of successful extensions: 76607
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76468
Number of HSP's gapped (non-prelim): 138
length of query: 437
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 415
effective length of database: 17,147,199,772
effective search space: 7116087905380
effective search space used: 7116087905380
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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