ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal30d11 |
|---|---|
| Clone Library Name | barley_pub |
>POF13_SCHPO (O94334) F-box protein pof13| Length = 396 Score = 32.7 bits (73), Expect = 0.53 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = -3 Query: 225 TLTPVIFGSYIVFRVCLDLVPLAQPAPKQCFTPRCPVNCC 106 TLT I+F+ LD +P P +C RCP+N C Sbjct: 223 TLTSNWHSRVILFQNALDALPTTHGNPVECDISRCPLNAC 262
>YPAH_PSELE (P52089) UPF0178 protein in pahZ1 5'region| Length = 154 Score = 30.8 bits (68), Expect = 2.0 Identities = 15/43 (34%), Positives = 25/43 (58%) Frame = +2 Query: 38 VVVRGEMPLEPRASWFSPKCVEAQQLTGHLGVKHCFGAGCASG 166 V+ +G +PL PR W++ + AQQLT ++ G+G +G Sbjct: 82 VLEKGGLPLNPRGEWYTKDTI-AQQLTMRAFMEELRGSGVDTG 123
>TSH1_MOUSE (Q5DTH5) Teashirt homolog 1 (Serologically defined colon cancer| antigen 3 homolog) Length = 1084 Score = 30.4 bits (67), Expect = 2.6 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 9/75 (12%) Frame = +2 Query: 92 KCVEA-------QQLTGHLGVK-HCFGAGCASGTKSRQ-TLNTIYDPKITGVKVGQXXXX 244 KC+E QQLT H+ V H ++ K +Q L+ + + KI + + Sbjct: 417 KCMECGSSHDTLQQLTAHMMVTGHFLKVTTSASKKGKQLVLDPVVEEKIQSIPLPPTTHT 476 Query: 245 XXASSSRGKQPGSPA 289 +SS KQP SPA Sbjct: 477 RLPASSIKKQPDSPA 491
>TSH1_HUMAN (Q6ZSZ6) Teashirt homolog 1 (Serologically defined colon cancer| antigen 3) (Antigen NY-CO-33) Length = 1077 Score = 30.4 bits (67), Expect = 2.6 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 9/75 (12%) Frame = +2 Query: 92 KCVEA-------QQLTGHLGVK-HCFGAGCASGTKSRQ-TLNTIYDPKITGVKVGQXXXX 244 KC+E QQLT H+ V H ++ K +Q L+ + + KI + + Sbjct: 417 KCMECGSSHDTLQQLTAHMMVTGHFLKVTTSASKKGKQLVLDPVVEEKIQSIPLPPTTHT 476 Query: 245 XXASSSRGKQPGSPA 289 +SS KQP SPA Sbjct: 477 RLPASSIKKQPDSPA 491
>Y172_ADE02 (P03285) Hypothetical protein D-172| Length = 172 Score = 30.0 bits (66), Expect = 3.4 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 8/77 (10%) Frame = +2 Query: 77 SWFSPKCVEAQQLTGHLGVKHCFGAGCASGTKSRQTLNTIYD--------PKITGVKVGQ 232 +W P + A L GH G C G G +S+ ++ ++ +I G +G+ Sbjct: 83 AWRRPPTLTATGLMGHSGTTGCISGGVLEGPESQLSVLLLHSLDTGDVGRLRIAGTNLGR 142 Query: 233 XXXXXXASSSRGKQPGS 283 + S G GS Sbjct: 143 RVGLAGSGSGSGSGSGS 159
>DOK1_HUMAN (Q99704) Docking protein 1 (Downstream of tyrosine kinase 1)| (p62(dok)) (pp62) Length = 481 Score = 28.5 bits (62), Expect = 9.9 Identities = 16/36 (44%), Positives = 20/36 (55%) Frame = -2 Query: 175 RFGTARAARTETVLYP*MSSQLLRLNAFRGEPASSG 68 RFGT R +T VLYP + RL F + +SSG Sbjct: 16 RFGTKRWRKTWAVLYPASPHGVARLEFFDHKGSSSG 51
>DOK1_BOVIN (Q5EA84) Docking protein 1 (Downstream of tyrosine kinase 1)| Length = 483 Score = 28.5 bits (62), Expect = 9.9 Identities = 16/36 (44%), Positives = 20/36 (55%) Frame = -2 Query: 175 RFGTARAARTETVLYP*MSSQLLRLNAFRGEPASSG 68 RFGT R +T VLYP + RL F + +SSG Sbjct: 16 RFGTKRWRKTWAVLYPASPHGVARLEFFDHKGSSSG 51
>CN12L_DROME (Q9VTL1) CSN12-like protein| Length = 395 Score = 28.5 bits (62), Expect = 9.9 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 2/25 (8%) Frame = -3 Query: 195 IVFRVCLDLVPLAQPAPKQC--FTP 127 +++RVCLDL LAQ K C FTP Sbjct: 108 LMYRVCLDLRYLAQACEKHCQGFTP 132 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,451,120 Number of Sequences: 219361 Number of extensions: 1485632 Number of successful extensions: 3525 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 3401 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3525 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3362826254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
