ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal30d09 |
|---|---|
| Clone Library Name | barley_pub |
>POL_MLVMO (P03355) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 1199 Score = 33.9 bits (76), Expect = 0.38 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%) Frame = +3 Query: 366 GTSGGQAVLISGSSNGKS-NMSVLPEPYATIGAMTHSFIRAVECEPRTTYGR-LLTSMRA 539 G ++ + G++ GK + + + G +THSF+ +C P GR LLT ++A Sbjct: 40 GPLSDKSAWVQGATGGKRYRWTTDRKVHLATGKVTHSFLHVPDC-PYPLLGRDLLTKLKA 98 Query: 540 IMRDSGGNCNLQGPIG 587 + G + GP+G Sbjct: 99 QIHFEGSGAQVMGPMG 114
>POL_MLVRD (P11227) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 1196 Score = 33.5 bits (75), Expect = 0.50 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%) Frame = +3 Query: 366 GTSGGQAVLISGSSNGKS-NMSVLPEPYATIGAMTHSFIRAVECEPRTTYGR-LLTSMRA 539 G ++ + G++ GK + + + G +THSF+ +C P GR LLT ++A Sbjct: 40 GPLSDRSAWVQGATGGKRYRWTTDRKVHLATGKVTHSFLHVPDC-PYPLLGRDLLTKLKA 98 Query: 540 IMRDSGGNCNLQGPIG 587 + G + GP+G Sbjct: 99 QIHFKGSGAQIVGPMG 114
>POL_FLV (P10273) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT)] (Fragment) Length = 128 Score = 32.7 bits (73), Expect = 0.86 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 2/76 (2%) Frame = +3 Query: 366 GTSGGQAVLISGSSNGKS-NMSVLPEPYATIGAMTHSFIRAVECEPRTTYGR-LLTSMRA 539 G + L+ G++ K+ + G +THSF+ EC P GR LLT ++A Sbjct: 43 GPLSDRTALVQGATGSKNYRWTTDRRVQLATGKVTHSFLYVPEC-PYPLLGRDLLTKLKA 101 Query: 540 IMRDSGGNCNLQGPIG 587 + +G N+ GP G Sbjct: 102 QIHFTGEGANVVGPRG 117
>POL_MLVFP (P26808) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 1204 Score = 32.7 bits (73), Expect = 0.86 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 2/76 (2%) Frame = +3 Query: 366 GTSGGQAVLISGSSNGKS-NMSVLPEPYATIGAMTHSFIRAVECEPRTTYGR-LLTSMRA 539 G ++ + G++ GK + + G +THSF+ +C P GR LLT ++A Sbjct: 45 GPLSDKSAWVQGATGGKRYRWTTDRRVHLATGKVTHSFLHVPDC-PYPLLGRDLLTKLKA 103 Query: 540 IMRDSGGNCNLQGPIG 587 + G + GP+G Sbjct: 104 QIHFEGSGAQVVGPMG 119
>POL_MLVFF (P26809) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 1204 Score = 32.7 bits (73), Expect = 0.86 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 2/76 (2%) Frame = +3 Query: 366 GTSGGQAVLISGSSNGKS-NMSVLPEPYATIGAMTHSFIRAVECEPRTTYGR-LLTSMRA 539 G ++ + G++ GK + + G +THSF+ +C P GR LLT ++A Sbjct: 45 GPLSDKSAWVQGATGGKRYRWTTDRRVHLATGKVTHSFLHVPDC-PYPLLGRDLLTKLKA 103 Query: 540 IMRDSGGNCNLQGPIG 587 + G + GP+G Sbjct: 104 QIHFEGSGAQVVGPMG 119
>POL_MLVF5 (P26810) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 1204 Score = 32.7 bits (73), Expect = 0.86 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 2/76 (2%) Frame = +3 Query: 366 GTSGGQAVLISGSSNGKS-NMSVLPEPYATIGAMTHSFIRAVECEPRTTYGR-LLTSMRA 539 G ++ + G++ GK + + G +THSF+ +C P GR LLT ++A Sbjct: 45 GPLSDKSAWVQGATGGKRYRWTTDRRVHLATGKVTHSFLHVPDC-PYPLLGRHLLTKLKA 103 Query: 540 IMRDSGGNCNLQGPIG 587 + G + GP+G Sbjct: 104 QIHFEGSGAQVVGPMG 119
>POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 1196 Score = 31.6 bits (70), Expect = 1.9 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 2/76 (2%) Frame = +3 Query: 366 GTSGGQAVLISGSSNGKS-NMSVLPEPYATIGAMTHSFIRAVECEPRTTYGR-LLTSMRA 539 G ++ + G++ GK + + + G +THSF+ +C P GR LLT ++A Sbjct: 40 GPLSDRSAWVQGATGGKRYRWTTDRKVHLATGKVTHSFLHVPDC-PYPLLGRDLLTKLKA 98 Query: 540 IMRDSGGNCNLQGPIG 587 + G + GP G Sbjct: 99 QIHFEGSGAQVVGPKG 114
>TRY2_CHICK (Q90628) Trypsin I-P38 precursor (EC 3.4.21.4)| Length = 248 Score = 30.8 bits (68), Expect = 3.3 Identities = 24/84 (28%), Positives = 38/84 (45%) Frame = +3 Query: 345 PMTGACKGTSGGQAVLISGSSNGKSNMSVLPEPYATIGAMTHSFIRAVECEPRTTYGRLL 524 P+ +C + G LISG N S+ S+ P+ + A S + P GR+ Sbjct: 129 PLPTSC--VTAGTTCLISGWGNTLSSGSLYPDVLQCLNAPVLSSSQCSSAYP----GRIT 182 Query: 525 TSMRAIMRDSGGNCNLQGPIGGSI 596 ++M I +GG + QG GG + Sbjct: 183 SNMICIGYLNGGKDSCQGDSGGPV 206
>TRY1_CHICK (Q90627) Trypsin I-P1 precursor (EC 3.4.21.4)| Length = 248 Score = 30.8 bits (68), Expect = 3.3 Identities = 24/84 (28%), Positives = 38/84 (45%) Frame = +3 Query: 345 PMTGACKGTSGGQAVLISGSSNGKSNMSVLPEPYATIGAMTHSFIRAVECEPRTTYGRLL 524 P+ +C + G LISG N S+ S+ P+ + A S + P GR+ Sbjct: 129 PLPTSC--VTAGTTCLISGWGNTLSSGSLYPDVLQCLNAPVLSSSQCSSAYP----GRIT 182 Query: 525 TSMRAIMRDSGGNCNLQGPIGGSI 596 ++M I +GG + QG GG + Sbjct: 183 SNMICIGYLNGGKDSCQGDSGGPV 206 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,715,892 Number of Sequences: 219361 Number of extensions: 1021857 Number of successful extensions: 3343 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 3245 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3343 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5481822624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
