| Clone Name | baal30d05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|S68729.1| LHC Ib-20=light-harvesting complex I [Hordeum vulgare=barley, Prato, mRNA Chloroplast, 939 nt] Length = 939 Score = 827 bits (417), Expect = 0.0 Identities = 461/474 (97%), Gaps = 10/474 (2%) Strand = Plus / Plus Query: 89 ctacgtcgagatccggcggtggcaggacatcaagaacccgggctccgtcaaccaggaccc 148 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 390 ctacgtcgagatccggcggtggcaggacatcaagaacccgggctccgtcaaccaggaccc 449 Query: 149 catcttcaagagctacagcctcccgccccacgagtgcggctaccccggcagcgtcttcaa 208 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 450 catcttcaagagctacagcctcccgccccacgagtgcggctaccccggcagagtcttcaa 509 Query: 209 ccccctcaacttcgcccccaccctcgagaacaaggagaaggagctcgccaacgggagact 268 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 510 ccccctcaacttcgccccc---ctcgagaacaaggagaaggagctcgccaacgggagact 566 Query: 269 ggccatgctggcgttcctggggttcctggtgcagcacaacgtgaccgggaaggggccgtt 328 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 567 ggccatgctggcgttcctggggttcctggtgcagcacaacgtgcacgggaaggggccgtt 626 Query: 329 cgagaacctgcagcagcacctggccgacccatggcacaacaccatcatccagaccatctc 388 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 627 cgagaacctgcagcagcacctggccgacccatggcacaacaccatcatccagaccatctc 686 Query: 389 cggccaataaatccgtcgatttcaccgaccaaggaggtttcaggtggtctgaattattat 448 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 687 cggccaataaatccgtcgatttcaccgaccaaggaggttt-aggtggtctgaattattat 745 Query: 449 tttggggtgctgaggatgtacaaagtgtggaggagtaggtggcagtgcaaaaacgtgttg 508 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 746 tttggggtgctgaggatgtacaaagtgtggaggagtaggtggcagtgcaaaaacgtgttg 805 Query: 509 taatcttaaagttccggtggtgaaactttgtccttgtggattcgcccatggctt 562 |||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 806 taat------gttccggtggtgaaactttgtccttgtggattcgcccatggctt 853 Score = 65.9 bits (33), Expect = 1e-07 Identities = 40/41 (97%), Gaps = 1/41 (2%) Strand = Plus / Plus Query: 27 ggcaaggagacctacttcgcctcctcctccac-gctcttcg 66 |||||||||||||||||||||||||||||||| |||||||| Sbjct: 331 ggcaaggagacctacttcgcctcctcctccactgctcttcg 371
>gb|AF287276.1|AF287276 Hordeum vulgare chlorophyll a/b-binding protein precursor (Lhca4) mRNA, partial cds; nuclear gene for chloroplast product Length = 687 Score = 773 bits (390), Expect = 0.0 Identities = 397/398 (99%), Gaps = 1/398 (0%) Strand = Plus / Plus Query: 2 tgaacgcgcccga-tggtacgacgccggcaaggagacctacttcgcctcctcctccacgc 60 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 290 tgaacgcgcccgagtggtacgacgccggcaaggagacctacttcgcctcctcctccacgc 349 Query: 61 tcttcgtcatcgagttcatcctcttccactacgtcgagatccggcggtggcaggacatca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 350 tcttcgtcatcgagttcatcctcttccactacgtcgagatccggcggtggcaggacatca 409 Query: 121 agaacccgggctccgtcaaccaggaccccatcttcaagagctacagcctcccgccccacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 410 agaacccgggctccgtcaaccaggaccccatcttcaagagctacagcctcccgccccacg 469 Query: 181 agtgcggctaccccggcagcgtcttcaaccccctcaacttcgcccccaccctcgagaaca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 470 agtgcggctaccccggcagcgtcttcaaccccctcaacttcgcccccaccctcgagaaca 529 Query: 241 aggagaaggagctcgccaacgggagactggccatgctggcgttcctggggttcctggtgc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 530 aggagaaggagctcgccaacgggagactggccatgctggcgttcctggggttcctggtgc 589 Query: 301 agcacaacgtgaccgggaaggggccgttcgagaacctgcagcagcacctggccgacccat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 590 agcacaacgtgaccgggaaggggccgttcgagaacctgcagcagcacctggccgacccat 649 Query: 361 ggcacaacaccatcatccagaccatctccggccaataa 398 |||||||||||||||||||||||||||||||||||||| Sbjct: 650 ggcacaacaccatcatccagaccatctccggccaataa 687
>ref|XM_482572.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1070 Score = 507 bits (256), Expect = e-140 Identities = 340/368 (92%) Strand = Plus / Plus Query: 15 tggtacgacgccggcaaggagacctacttcgcctcctcctccacgctcttcgtcatcgag 74 ||||||||||||||||||| ||||||||||| || || || ||||| |||||||||||| Sbjct: 420 tggtacgacgccggcaaggccacctacttcgcgtcgtcgtcgacgctgttcgtcatcgag 479 Query: 75 ttcatcctcttccactacgtcgagatccggcggtggcaggacatcaagaacccgggctcc 134 |||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||| | Sbjct: 480 ttcatcctgttccactacgtggagatccggcggtggcaggacatcaagaaccctggctgc 539 Query: 135 gtcaaccaggaccccatcttcaagagctacagcctcccgccccacgagtgcggctacccc 194 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 540 gtcaaccaggaccccatcttcaagagctacagcctcccgccgcacgagtgcggctacccc 599 Query: 195 ggcagcgtcttcaaccccctcaacttcgcccccaccctcgagaacaaggagaaggagctc 254 |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct: 600 ggcagcgtcttcaaccccctcaacttcgagcccaccctcgaggccaaggagaaggagctc 659 Query: 255 gccaacgggagactggccatgctggcgttcctggggttcctggtgcagcacaacgtgacc 314 ||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||| Sbjct: 660 gccaacgggaggctggcgatgctggcgttcttggggttcctggtgcagcacaacgtgacg 719 Query: 315 gggaaggggccgttcgagaacctgcagcagcacctggccgacccatggcacaacaccatc 374 ||||||||| ||||| ||||||| |||||||||| | ||||| ||||||||||||||| Sbjct: 720 cagaaggggcccttcgacaacctgctgcagcacctgtctgacccgtggcacaacaccatc 779 Query: 375 atccagac 382 |||||||| Sbjct: 780 atccagac 787
>ref|XM_507585.1| PREDICTED Oryza sativa (japonica cultivar-group), P0413H11.35 mRNA Length = 1138 Score = 507 bits (256), Expect = e-140 Identities = 340/368 (92%) Strand = Plus / Plus Query: 15 tggtacgacgccggcaaggagacctacttcgcctcctcctccacgctcttcgtcatcgag 74 ||||||||||||||||||| ||||||||||| || || || ||||| |||||||||||| Sbjct: 424 tggtacgacgccggcaaggccacctacttcgcgtcgtcgtcgacgctgttcgtcatcgag 483 Query: 75 ttcatcctcttccactacgtcgagatccggcggtggcaggacatcaagaacccgggctcc 134 |||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||| | Sbjct: 484 ttcatcctgttccactacgtggagatccggcggtggcaggacatcaagaaccctggctgc 543 Query: 135 gtcaaccaggaccccatcttcaagagctacagcctcccgccccacgagtgcggctacccc 194 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 544 gtcaaccaggaccccatcttcaagagctacagcctcccgccgcacgagtgcggctacccc 603 Query: 195 ggcagcgtcttcaaccccctcaacttcgcccccaccctcgagaacaaggagaaggagctc 254 |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct: 604 ggcagcgtcttcaaccccctcaacttcgagcccaccctcgaggccaaggagaaggagctc 663 Query: 255 gccaacgggagactggccatgctggcgttcctggggttcctggtgcagcacaacgtgacc 314 ||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||| Sbjct: 664 gccaacgggaggctggcgatgctggcgttcttggggttcctggtgcagcacaacgtgacg 723 Query: 315 gggaaggggccgttcgagaacctgcagcagcacctggccgacccatggcacaacaccatc 374 ||||||||| ||||| ||||||| |||||||||| | ||||| ||||||||||||||| Sbjct: 724 cagaaggggcccttcgacaacctgctgcagcacctgtctgacccgtggcacaacaccatc 783 Query: 375 atccagac 382 |||||||| Sbjct: 784 atccagac 791
>ref|XM_507584.1| PREDICTED Oryza sativa (japonica cultivar-group), P0413H11.35 mRNA Length = 1138 Score = 507 bits (256), Expect = e-140 Identities = 340/368 (92%) Strand = Plus / Plus Query: 15 tggtacgacgccggcaaggagacctacttcgcctcctcctccacgctcttcgtcatcgag 74 ||||||||||||||||||| ||||||||||| || || || ||||| |||||||||||| Sbjct: 424 tggtacgacgccggcaaggccacctacttcgcgtcgtcgtcgacgctgttcgtcatcgag 483 Query: 75 ttcatcctcttccactacgtcgagatccggcggtggcaggacatcaagaacccgggctcc 134 |||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||| | Sbjct: 484 ttcatcctgttccactacgtggagatccggcggtggcaggacatcaagaaccctggctgc 543 Query: 135 gtcaaccaggaccccatcttcaagagctacagcctcccgccccacgagtgcggctacccc 194 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 544 gtcaaccaggaccccatcttcaagagctacagcctcccgccgcacgagtgcggctacccc 603 Query: 195 ggcagcgtcttcaaccccctcaacttcgcccccaccctcgagaacaaggagaaggagctc 254 |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct: 604 ggcagcgtcttcaaccccctcaacttcgagcccaccctcgaggccaaggagaaggagctc 663 Query: 255 gccaacgggagactggccatgctggcgttcctggggttcctggtgcagcacaacgtgacc 314 ||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||| Sbjct: 664 gccaacgggaggctggcgatgctggcgttcttggggttcctggtgcagcacaacgtgacg 723 Query: 315 gggaaggggccgttcgagaacctgcagcagcacctggccgacccatggcacaacaccatc 374 ||||||||| ||||| ||||||| |||||||||| | ||||| ||||||||||||||| Sbjct: 724 cagaaggggcccttcgacaacctgctgcagcacctgtctgacccgtggcacaacaccatc 783 Query: 375 atccagac 382 |||||||| Sbjct: 784 atccagac 791
>ref|XM_507583.1| PREDICTED Oryza sativa (japonica cultivar-group), P0413H11.35 mRNA Length = 1178 Score = 507 bits (256), Expect = e-140 Identities = 340/368 (92%) Strand = Plus / Plus Query: 15 tggtacgacgccggcaaggagacctacttcgcctcctcctccacgctcttcgtcatcgag 74 ||||||||||||||||||| ||||||||||| || || || ||||| |||||||||||| Sbjct: 421 tggtacgacgccggcaaggccacctacttcgcgtcgtcgtcgacgctgttcgtcatcgag 480 Query: 75 ttcatcctcttccactacgtcgagatccggcggtggcaggacatcaagaacccgggctcc 134 |||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||| | Sbjct: 481 ttcatcctgttccactacgtggagatccggcggtggcaggacatcaagaaccctggctgc 540 Query: 135 gtcaaccaggaccccatcttcaagagctacagcctcccgccccacgagtgcggctacccc 194 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 541 gtcaaccaggaccccatcttcaagagctacagcctcccgccgcacgagtgcggctacccc 600 Query: 195 ggcagcgtcttcaaccccctcaacttcgcccccaccctcgagaacaaggagaaggagctc 254 |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct: 601 ggcagcgtcttcaaccccctcaacttcgagcccaccctcgaggccaaggagaaggagctc 660 Query: 255 gccaacgggagactggccatgctggcgttcctggggttcctggtgcagcacaacgtgacc 314 ||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||| Sbjct: 661 gccaacgggaggctggcgatgctggcgttcttggggttcctggtgcagcacaacgtgacg 720 Query: 315 gggaaggggccgttcgagaacctgcagcagcacctggccgacccatggcacaacaccatc 374 ||||||||| ||||| ||||||| |||||||||| | ||||| ||||||||||||||| Sbjct: 721 cagaaggggcccttcgacaacctgctgcagcacctgtctgacccgtggcacaacaccatc 780 Query: 375 atccagac 382 |||||||| Sbjct: 781 atccagac 788
>ref|XM_507582.1| PREDICTED Oryza sativa (japonica cultivar-group), P0413H11.35 mRNA Length = 1188 Score = 507 bits (256), Expect = e-140 Identities = 340/368 (92%) Strand = Plus / Plus Query: 15 tggtacgacgccggcaaggagacctacttcgcctcctcctccacgctcttcgtcatcgag 74 ||||||||||||||||||| ||||||||||| || || || ||||| |||||||||||| Sbjct: 420 tggtacgacgccggcaaggccacctacttcgcgtcgtcgtcgacgctgttcgtcatcgag 479 Query: 75 ttcatcctcttccactacgtcgagatccggcggtggcaggacatcaagaacccgggctcc 134 |||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||| | Sbjct: 480 ttcatcctgttccactacgtggagatccggcggtggcaggacatcaagaaccctggctgc 539 Query: 135 gtcaaccaggaccccatcttcaagagctacagcctcccgccccacgagtgcggctacccc 194 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 540 gtcaaccaggaccccatcttcaagagctacagcctcccgccgcacgagtgcggctacccc 599 Query: 195 ggcagcgtcttcaaccccctcaacttcgcccccaccctcgagaacaaggagaaggagctc 254 |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct: 600 ggcagcgtcttcaaccccctcaacttcgagcccaccctcgaggccaaggagaaggagctc 659 Query: 255 gccaacgggagactggccatgctggcgttcctggggttcctggtgcagcacaacgtgacc 314 ||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||| Sbjct: 660 gccaacgggaggctggcgatgctggcgttcttggggttcctggtgcagcacaacgtgacg 719 Query: 315 gggaaggggccgttcgagaacctgcagcagcacctggccgacccatggcacaacaccatc 374 ||||||||| ||||| ||||||| |||||||||| | ||||| ||||||||||||||| Sbjct: 720 cagaaggggcccttcgacaacctgctgcagcacctgtctgacccgtggcacaacaccatc 779 Query: 375 atccagac 382 |||||||| Sbjct: 780 atccagac 787
>ref|XM_507239.2| PREDICTED Oryza sativa (japonica cultivar-group), P0413H11.35 mRNA Length = 1191 Score = 507 bits (256), Expect = e-140 Identities = 340/368 (92%) Strand = Plus / Plus Query: 15 tggtacgacgccggcaaggagacctacttcgcctcctcctccacgctcttcgtcatcgag 74 ||||||||||||||||||| ||||||||||| || || || ||||| |||||||||||| Sbjct: 423 tggtacgacgccggcaaggccacctacttcgcgtcgtcgtcgacgctgttcgtcatcgag 482 Query: 75 ttcatcctcttccactacgtcgagatccggcggtggcaggacatcaagaacccgggctcc 134 |||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||| | Sbjct: 483 ttcatcctgttccactacgtggagatccggcggtggcaggacatcaagaaccctggctgc 542 Query: 135 gtcaaccaggaccccatcttcaagagctacagcctcccgccccacgagtgcggctacccc 194 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 543 gtcaaccaggaccccatcttcaagagctacagcctcccgccgcacgagtgcggctacccc 602 Query: 195 ggcagcgtcttcaaccccctcaacttcgcccccaccctcgagaacaaggagaaggagctc 254 |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct: 603 ggcagcgtcttcaaccccctcaacttcgagcccaccctcgaggccaaggagaaggagctc 662 Query: 255 gccaacgggagactggccatgctggcgttcctggggttcctggtgcagcacaacgtgacc 314 ||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||| Sbjct: 663 gccaacgggaggctggcgatgctggcgttcttggggttcctggtgcagcacaacgtgacg 722 Query: 315 gggaaggggccgttcgagaacctgcagcagcacctggccgacccatggcacaacaccatc 374 ||||||||| ||||| ||||||| |||||||||| | ||||| ||||||||||||||| Sbjct: 723 cagaaggggcccttcgacaacctgctgcagcacctgtctgacccgtggcacaacaccatc 782 Query: 375 atccagac 382 |||||||| Sbjct: 783 atccagac 790
>dbj|AK104499.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-E04, full insert sequence Length = 1140 Score = 507 bits (256), Expect = e-140 Identities = 340/368 (92%) Strand = Plus / Plus Query: 15 tggtacgacgccggcaaggagacctacttcgcctcctcctccacgctcttcgtcatcgag 74 ||||||||||||||||||| ||||||||||| || || || ||||| |||||||||||| Sbjct: 424 tggtacgacgccggcaaggccacctacttcgcgtcgtcgtcgacgctgttcgtcatcgag 483 Query: 75 ttcatcctcttccactacgtcgagatccggcggtggcaggacatcaagaacccgggctcc 134 |||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||| | Sbjct: 484 ttcatcctgttccactacgtggagatccggcggtggcaggacatcaagaaccctggctgc 543 Query: 135 gtcaaccaggaccccatcttcaagagctacagcctcccgccccacgagtgcggctacccc 194 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 544 gtcaaccaggaccccatcttcaagagctacagcctcccgccgcacgagtgcggctacccc 603 Query: 195 ggcagcgtcttcaaccccctcaacttcgcccccaccctcgagaacaaggagaaggagctc 254 |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct: 604 ggcagcgtcttcaaccccctcaacttcgagcccaccctcgaggccaaggagaaggagctc 663 Query: 255 gccaacgggagactggccatgctggcgttcctggggttcctggtgcagcacaacgtgacc 314 ||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||| Sbjct: 664 gccaacgggaggctggcgatgctggcgttcttggggttcctggtgcagcacaacgtgacg 723 Query: 315 gggaaggggccgttcgagaacctgcagcagcacctggccgacccatggcacaacaccatc 374 ||||||||| ||||| ||||||| |||||||||| | ||||| ||||||||||||||| Sbjct: 724 cagaaggggcccttcgacaacctgctgcagcacctgtctgacccgtggcacaacaccatc 783 Query: 375 atccagac 382 |||||||| Sbjct: 784 atccagac 791
>dbj|AK104416.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-G03, full insert sequence Length = 1177 Score = 507 bits (256), Expect = e-140 Identities = 340/368 (92%) Strand = Plus / Plus Query: 15 tggtacgacgccggcaaggagacctacttcgcctcctcctccacgctcttcgtcatcgag 74 ||||||||||||||||||| ||||||||||| || || || ||||| |||||||||||| Sbjct: 421 tggtacgacgccggcaaggccacctacttcgcgtcgtcgtcgacgctgttcgtcatcgag 480 Query: 75 ttcatcctcttccactacgtcgagatccggcggtggcaggacatcaagaacccgggctcc 134 |||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||| | Sbjct: 481 ttcatcctgttccactacgtggagatccggcggtggcaggacatcaagaaccctggctgc 540 Query: 135 gtcaaccaggaccccatcttcaagagctacagcctcccgccccacgagtgcggctacccc 194 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 541 gtcaaccaggaccccatcttcaagagctacagcctcccgccgcacgagtgcggctacccc 600 Query: 195 ggcagcgtcttcaaccccctcaacttcgcccccaccctcgagaacaaggagaaggagctc 254 |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct: 601 ggcagcgtcttcaaccccctcaacttcgagcccaccctcgaggccaaggagaaggagctc 660 Query: 255 gccaacgggagactggccatgctggcgttcctggggttcctggtgcagcacaacgtgacc 314 ||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||| Sbjct: 661 gccaacgggaggctggcgatgctggcgttcttggggttcctggtgcagcacaacgtgacg 720 Query: 315 gggaaggggccgttcgagaacctgcagcagcacctggccgacccatggcacaacaccatc 374 ||||||||| ||||| ||||||| |||||||||| | ||||| ||||||||||||||| Sbjct: 721 cagaaggggcccttcgacaacctgctgcagcacctgtctgacccgtggcacaacaccatc 780 Query: 375 atccagac 382 |||||||| Sbjct: 781 atccagac 788
>dbj|AK067809.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013121A03, full insert sequence Length = 1190 Score = 507 bits (256), Expect = e-140 Identities = 340/368 (92%) Strand = Plus / Plus Query: 15 tggtacgacgccggcaaggagacctacttcgcctcctcctccacgctcttcgtcatcgag 74 ||||||||||||||||||| ||||||||||| || || || ||||| |||||||||||| Sbjct: 422 tggtacgacgccggcaaggccacctacttcgcgtcgtcgtcgacgctgttcgtcatcgag 481 Query: 75 ttcatcctcttccactacgtcgagatccggcggtggcaggacatcaagaacccgggctcc 134 |||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||| | Sbjct: 482 ttcatcctgttccactacgtggagatccggcggtggcaggacatcaagaaccctggctgc 541 Query: 135 gtcaaccaggaccccatcttcaagagctacagcctcccgccccacgagtgcggctacccc 194 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 542 gtcaaccaggaccccatcttcaagagctacagcctcccgccgcacgagtgcggctacccc 601 Query: 195 ggcagcgtcttcaaccccctcaacttcgcccccaccctcgagaacaaggagaaggagctc 254 |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct: 602 ggcagcgtcttcaaccccctcaacttcgagcccaccctcgaggccaaggagaaggagctc 661 Query: 255 gccaacgggagactggccatgctggcgttcctggggttcctggtgcagcacaacgtgacc 314 ||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||| Sbjct: 662 gccaacgggaggctggcgatgctggcgttcttggggttcctggtgcagcacaacgtgacg 721 Query: 315 gggaaggggccgttcgagaacctgcagcagcacctggccgacccatggcacaacaccatc 374 ||||||||| ||||| ||||||| |||||||||| | ||||| ||||||||||||||| Sbjct: 722 cagaaggggcccttcgacaacctgctgcagcacctgtctgacccgtggcacaacaccatc 781 Query: 375 atccagac 382 |||||||| Sbjct: 782 atccagac 789
>dbj|AK067712.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013120A20, full insert sequence Length = 1138 Score = 507 bits (256), Expect = e-140 Identities = 340/368 (92%) Strand = Plus / Plus Query: 15 tggtacgacgccggcaaggagacctacttcgcctcctcctccacgctcttcgtcatcgag 74 ||||||||||||||||||| ||||||||||| || || || ||||| |||||||||||| Sbjct: 424 tggtacgacgccggcaaggccacctacttcgcgtcgtcgtcgacgctgttcgtcatcgag 483 Query: 75 ttcatcctcttccactacgtcgagatccggcggtggcaggacatcaagaacccgggctcc 134 |||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||| | Sbjct: 484 ttcatcctgttccactacgtggagatccggcggtggcaggacatcaagaaccctggctgc 543 Query: 135 gtcaaccaggaccccatcttcaagagctacagcctcccgccccacgagtgcggctacccc 194 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 544 gtcaaccaggaccccatcttcaagagctacagcctcccgccgcacgagtgcggctacccc 603 Query: 195 ggcagcgtcttcaaccccctcaacttcgcccccaccctcgagaacaaggagaaggagctc 254 |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct: 604 ggcagcgtcttcaaccccctcaacttcgagcccaccctcgaggccaaggagaaggagctc 663 Query: 255 gccaacgggagactggccatgctggcgttcctggggttcctggtgcagcacaacgtgacc 314 ||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||| Sbjct: 664 gccaacgggaggctggcgatgctggcgttcttggggttcctggtgcagcacaacgtgacg 723 Query: 315 gggaaggggccgttcgagaacctgcagcagcacctggccgacccatggcacaacaccatc 374 ||||||||| ||||| ||||||| |||||||||| | ||||| ||||||||||||||| Sbjct: 724 cagaaggggcccttcgacaacctgctgcagcacctgtctgacccgtggcacaacaccatc 783 Query: 375 atccagac 382 |||||||| Sbjct: 784 atccagac 791
>dbj|AK060222.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-F08, full insert sequence Length = 1078 Score = 507 bits (256), Expect = e-140 Identities = 340/368 (92%) Strand = Plus / Plus Query: 15 tggtacgacgccggcaaggagacctacttcgcctcctcctccacgctcttcgtcatcgag 74 ||||||||||||||||||| ||||||||||| || || || ||||| |||||||||||| Sbjct: 429 tggtacgacgccggcaaggccacctacttcgcgtcgtcgtcgacgctgttcgtcatcgag 488 Query: 75 ttcatcctcttccactacgtcgagatccggcggtggcaggacatcaagaacccgggctcc 134 |||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||| | Sbjct: 489 ttcatcctgttccactacgtggagatccggcggtggcaggacatcaagaaccctggctgc 548 Query: 135 gtcaaccaggaccccatcttcaagagctacagcctcccgccccacgagtgcggctacccc 194 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 549 gtcaaccaggaccccatcttcaagagctacagcctcccgccgcacgagtgcggctacccc 608 Query: 195 ggcagcgtcttcaaccccctcaacttcgcccccaccctcgagaacaaggagaaggagctc 254 |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct: 609 ggcagcgtcttcaaccccctcaacttcgagcccaccctcgaggccaaggagaaggagctc 668 Query: 255 gccaacgggagactggccatgctggcgttcctggggttcctggtgcagcacaacgtgacc 314 ||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||| Sbjct: 669 gccaacgggaggctggcgatgctggcgttcttggggttcctggtgcagcacaacgtgacg 728 Query: 315 gggaaggggccgttcgagaacctgcagcagcacctggccgacccatggcacaacaccatc 374 ||||||||| ||||| ||||||| |||||||||| | ||||| ||||||||||||||| Sbjct: 729 cagaaggggcccttcgacaacctgctgcagcacctgtctgacccgtggcacaacaccatc 788 Query: 375 atccagac 382 |||||||| Sbjct: 789 atccagac 796
>dbj|AK103921.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-B07, full insert sequence Length = 1193 Score = 484 bits (244), Expect = e-133 Identities = 337/368 (91%) Strand = Plus / Plus Query: 15 tggtacgacgccggcaaggagacctacttcgcctcctcctccacgctcttcgtcatcgag 74 ||||||||| ||||||||| ||||||||||| || || || ||||| |||||||||||| Sbjct: 425 tggtacgacaccggcaaggccacctacttcgcgtcgtcgtcgacgctgttcgtcatcgag 484 Query: 75 ttcatcctcttccactacgtcgagatccggcggtggcaggacatcaagaacccgggctcc 134 ||||||| ||||||||||| ||||||||||||||||||||||||||| |||| |||| | Sbjct: 485 ttcatcccgttccactacgtggagatccggcggtggcaggacatcaaggaccctggctgc 544 Query: 135 gtcaaccaggaccccatcttcaagagctacagcctcccgccccacgagtgcggctacccc 194 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 545 gtcaaccaggaccccatcttcaagagctacagcctcccgccgcacgagtgcggctacccc 604 Query: 195 ggcagcgtcttcaaccccctcaacttcgcccccaccctcgagaacaaggagaaggagctc 254 |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct: 605 ggcagcgtcttcaaccccctcaacttcgagcccaccctcgaggccaaggagaaggagctc 664 Query: 255 gccaacgggagactggccatgctggcgttcctggggttcctggtgcagcacaacgtgacc 314 ||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||| Sbjct: 665 gccaacgggaggctggcgatgctggcgttcttggggttcctggtgcagcacaacgtgacg 724 Query: 315 gggaaggggccgttcgagaacctgcagcagcacctggccgacccatggcacaacaccatc 374 ||||||||| ||||| ||||||| |||||||||| | ||||| ||||||||||||||| Sbjct: 725 cagaaggggcccttcgacaacctgctgcagcacctgtctgacccgtggcacaacaccatc 784 Query: 375 atccagac 382 |||||||| Sbjct: 785 atccagac 792
>ref|XM_482573.1| Oryza sativa (japonica cultivar-group), mRNA Length = 576 Score = 482 bits (243), Expect = e-133 Identities = 334/363 (92%), Gaps = 1/363 (0%) Strand = Plus / Minus Query: 15 tggtacgacgccggcaaggagacctacttcgcctcctcctccacgctcttcgtcatcgag 74 ||||||||||||||||||| ||||||||||| || || || ||||| |||||||||||| Sbjct: 363 tggtacgacgccggcaaggccacctacttcgcgtcgtcgtcgacgctgttcgtcatcgag 304 Query: 75 ttcatcctcttccactacgtcgagatccggcggtggcaggacatcaagaacccgggctcc 134 |||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||| | Sbjct: 303 ttcatcctgttccactacgtggagatccggcggtggcaggacatcaagaaccctggctgc 244 Query: 135 gtcaaccaggaccccatcttcaagagctacagcctcccgccccacgagtgcggctacccc 194 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 243 gtcaaccaggaccccatcttcaagagctacagcctcccgccgcacgagtgcggctacccc 184 Query: 195 ggcagcgtcttcaaccccctcaacttcgcccccaccctcgagaacaaggagaaggagctc 254 |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct: 183 ggcagcgtcttcaaccccctcaacttcgagcccaccctcgaggccaaggagaaggagctc 124 Query: 255 gccaac-gggagactggccatgctggcgttcctggggttcctggtgcagcacaacgtgac 313 |||||| ||||| ||||| |||||||||||| |||||||||||||||||||||||||||| Sbjct: 123 gccaacagggaggctggcgatgctggcgttcttggggttcctggtgcagcacaacgtgac 64 Query: 314 cgggaaggggccgttcgagaacctgcagcagcacctggccgacccatggcacaacaccat 373 ||||||||| ||||| ||||||| |||||||||| | ||||| |||||||||||||| Sbjct: 63 gcagaaggggcccttcgacaacctgctgcagcacctgtctgacccgtggcacaacaccat 4 Query: 374 cat 376 ||| Sbjct: 3 cat 1
>gb|AY445626.2| Oryza sativa (japonica cultivar-group) chlorophyll a/b binding protein presusor mRNA, complete cds; nuclear gene for chloroplast product Length = 1128 Score = 478 bits (241), Expect = e-131 Identities = 339/369 (91%), Gaps = 2/369 (0%) Strand = Plus / Plus Query: 15 tggtacgacgccggcaaggagacctacttcgcctcctcctccacgctcttcgtcatcgag 74 ||||||||||||||||||| ||||||||||| || || || ||||| |||||||||||| Sbjct: 400 tggtacgacgccggcaaggccacctacttcgcgtcgtcgtcgacgctgttcgtcatcgag 459 Query: 75 ttcatcctcttccactacgtcgagatccggcggtggcaggacatcaagaacccgggctcc 134 |||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||| | Sbjct: 460 ttcatcctgttccactacgtggagatccggcggtggcaggacatcaagaaccctggctgc 519 Query: 135 gtcaaccaggaccccatcttcaagagctacagcctcccgccccacgagtgcggctacccc 194 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct: 520 gtcaaccaggaccccatcttcaagagctacagcctcccgccgcacgagtgcggcta-ccc 578 Query: 195 ggcagcgtcttcaa-ccccctcaacttcgcccccaccctcgagaacaaggagaaggagct 253 |||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||| Sbjct: 579 ggcagcgtcttcaacccccctcaacttcgagcccaccctcgaggccaaggagaaggagct 638 Query: 254 cgccaacgggagactggccatgctggcgttcctggggttcctggtgcagcacaacgtgac 313 |||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||| Sbjct: 639 cgccaacgggaggctggcgatgctggcgttcttggggttcctggtgcagcacaacgtgac 698 Query: 314 cgggaaggggccgttcgagaacctgcagcagcacctggccgacccatggcacaacaccat 373 ||||||||| ||||| ||||||| |||||||||| | ||||| |||||||||||||| Sbjct: 699 gcagaaggggcccttcgacaacctgctgcagcacctgtctgacccgtggcacaacaccat 758 Query: 374 catccagac 382 ||||||||| Sbjct: 759 catccagac 767
>gb|AF094775.1|AF094775 Oryza sativa chlorophyll a/b-binding protein presursor (Cab27) mRNA, nuclear gene encoding chloroplast protein, complete cds Length = 1162 Score = 452 bits (228), Expect = e-124 Identities = 333/368 (90%) Strand = Plus / Plus Query: 15 tggtacgacgccggcaaggagacctacttcgcctcctcctccacgctcttcgtcatcgag 74 ||||||||||||||||||| ||||||||||| || || |||||| |||||||||||| Sbjct: 387 tggtacgacgccggcaaggccacctacttcgcgtcgtcgaacacgctgttcgtcatcgag 446 Query: 75 ttcatcctcttccactacgtcgagatccggcggtggcaggacatcaagaacccgggctcc 134 |||||||| ||||||||||| |||||||| | ||||||||||||||||||||| |||| | Sbjct: 447 ttcatcctgttccactacgtggagatccgccagtggcaggacatcaagaaccctggctgc 506 Query: 135 gtcaaccaggaccccatcttcaagagctacagcctcccgccccacgagtgcggctacccc 194 |||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||| Sbjct: 507 gtcaaccaggaccccatcttcaagagctacagactccccagcgacgagtgcggctacccc 566 Query: 195 ggcagcgtcttcaaccccctcaacttcgcccccaccctcgagaacaaggagaaggagctc 254 |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct: 567 ggcagcgtcttcaaccccctcaacttcgagcccaccctcgaggccaaggagaaggagctc 626 Query: 255 gccaacgggagactggccatgctggcgttcctggggttcctggtgcagcacaacgtgacc 314 ||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||| Sbjct: 627 gccaacgggaggctggcgatgctggcgttcttggggttcctggtgcagcacaacgtgacg 686 Query: 315 gggaaggggccgttcgagaacctgcagcagcacctggccgacccatggcacaacaccatc 374 ||||||||| ||||| ||||||| |||||||||| | ||||| ||||||||||||||| Sbjct: 687 cagaaggggcccttcgacaacctgctgcagcacctgtctgacccgtggcacaacaccatc 746 Query: 375 atccagac 382 |||||||| Sbjct: 747 atccagac 754
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 365 bits (184), Expect = 1e-97 Identities = 232/248 (93%) Strand = Plus / Minus Query: 15 tggtacgacgccggcaaggagacctacttcgcctcctcctccacgctcttcgtcatcgag 74 ||||||||||||||||||| ||||||||||| || || || ||||| |||||||||||| Sbjct: 21164898 tggtacgacgccggcaaggccacctacttcgcgtcgtcgtcgacgctgttcgtcatcgag 21164839 Query: 75 ttcatcctcttccactacgtcgagatccggcggtggcaggacatcaagaacccgggctcc 134 |||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||| | Sbjct: 21164838 ttcatcctgttccactacgtggagatccggcggtggcaggacatcaagaaccctggctgc 21164779 Query: 135 gtcaaccaggaccccatcttcaagagctacagcctcccgccccacgagtgcggctacccc 194 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 21164778 gtcaaccaggaccccatcttcaagagctacagcctcccgccgcacgagtgcggctacccc 21164719 Query: 195 ggcagcgtcttcaaccccctcaacttcgcccccaccctcgagaacaaggagaaggagctc 254 |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct: 21164718 ggcagcgtcttcaaccccctcaacttcgagcccaccctcgaggccaaggagaaggagctc 21164659 Query: 255 gccaacgg 262 |||||||| Sbjct: 21164658 gccaacgg 21164651 Score = 147 bits (74), Expect = 5e-32 Identities = 110/122 (90%) Strand = Plus / Minus Query: 261 gggagactggccatgctggcgttcctggggttcctggtgcagcacaacgtgaccgggaag 320 ||||| ||||| |||||||||||| |||||||||||||||||||||||||||| |||| Sbjct: 21164559 gggaggctggcgatgctggcgttcttggggttcctggtgcagcacaacgtgacgcagaag 21164500 Query: 321 gggccgttcgagaacctgcagcagcacctggccgacccatggcacaacaccatcatccag 380 ||||| ||||| ||||||| |||||||||| | ||||| ||||||||||||||||||||| Sbjct: 21164499 gggcccttcgacaacctgctgcagcacctgtctgacccgtggcacaacaccatcatccag 21164440 Query: 381 ac 382 || Sbjct: 21164439 ac 21164438
>dbj|AP005757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0413H11 Length = 147655 Score = 365 bits (184), Expect = 1e-97 Identities = 232/248 (93%) Strand = Plus / Minus Query: 15 tggtacgacgccggcaaggagacctacttcgcctcctcctccacgctcttcgtcatcgag 74 ||||||||||||||||||| ||||||||||| || || || ||||| |||||||||||| Sbjct: 136108 tggtacgacgccggcaaggccacctacttcgcgtcgtcgtcgacgctgttcgtcatcgag 136049 Query: 75 ttcatcctcttccactacgtcgagatccggcggtggcaggacatcaagaacccgggctcc 134 |||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||| | Sbjct: 136048 ttcatcctgttccactacgtggagatccggcggtggcaggacatcaagaaccctggctgc 135989 Query: 135 gtcaaccaggaccccatcttcaagagctacagcctcccgccccacgagtgcggctacccc 194 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 135988 gtcaaccaggaccccatcttcaagagctacagcctcccgccgcacgagtgcggctacccc 135929 Query: 195 ggcagcgtcttcaaccccctcaacttcgcccccaccctcgagaacaaggagaaggagctc 254 |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct: 135928 ggcagcgtcttcaaccccctcaacttcgagcccaccctcgaggccaaggagaaggagctc 135869 Query: 255 gccaacgg 262 |||||||| Sbjct: 135868 gccaacgg 135861 Score = 147 bits (74), Expect = 5e-32 Identities = 110/122 (90%) Strand = Plus / Minus Query: 261 gggagactggccatgctggcgttcctggggttcctggtgcagcacaacgtgaccgggaag 320 ||||| ||||| |||||||||||| |||||||||||||||||||||||||||| |||| Sbjct: 135769 gggaggctggcgatgctggcgttcttggggttcctggtgcagcacaacgtgacgcagaag 135710 Query: 321 gggccgttcgagaacctgcagcagcacctggccgacccatggcacaacaccatcatccag 380 ||||| ||||| ||||||| |||||||||| | ||||| ||||||||||||||||||||| Sbjct: 135709 gggcccttcgacaacctgctgcagcacctgtctgacccgtggcacaacaccatcatccag 135650 Query: 381 ac 382 || Sbjct: 135649 ac 135648
>emb|Z17226.1|PSLHCA411 Pinus sylvestris Lhca4*1-1 gene encoding Lhca4 protein (type 4 protein of light-harvesting complex of photosystem I) Length = 1013 Score = 87.7 bits (44), Expect = 4e-14 Identities = 140/172 (81%) Strand = Plus / Plus Query: 202 tcttcaaccccctcaacttcgcccccaccctcgagaacaaggagaaggagctcgccaacg 261 |||||||||| ||||||||| |||| || | ||| ||||||||||||||||||||| | Sbjct: 564 tcttcaaccctctcaacttctccccatccatggaggccaaggagaaggagctcgccaatg 623 Query: 262 ggagactggccatgctggcgttcctggggttcctggtgcagcacaacgtgaccgggaagg 321 ||||| |||| ||| | || |||||||| || | ||||| ||||| || || || |||| Sbjct: 624 ggagattggcaatgttagcattcctgggatttgtagtgcaacacaatgtaacaggaaagg 683 Query: 322 ggccgttcgagaacctgcagcagcacctggccgacccatggcacaacaccat 373 | |||||||| ||| ||| ||| || ||| | || ||||||||||||||||| Sbjct: 684 gcccgttcgacaacttgctgcaacatctgtctgatccatggcacaacaccat 735
>emb|Z16409.1|PSLHCA412 P.sylvestris Lhca4*1-2 mRNA encoding Lhca4 protein (type 4 protein of light-harvesting complex of photosystem I) (partial) Length = 968 Score = 87.7 bits (44), Expect = 4e-14 Identities = 140/172 (81%) Strand = Plus / Plus Query: 202 tcttcaaccccctcaacttcgcccccaccctcgagaacaaggagaaggagctcgccaacg 261 |||||||||| ||||||||| |||| || | ||| ||||||||||||||||||||| | Sbjct: 541 tcttcaaccctctcaacttctccccatccatggaggccaaggagaaggagctcgccaatg 600 Query: 262 ggagactggccatgctggcgttcctggggttcctggtgcagcacaacgtgaccgggaagg 321 ||||| |||| ||| | || |||||||| || | ||||| ||||| || || || |||| Sbjct: 601 ggagattggcaatgttagcattcctgggatttgtagtgcaacacaatgtaacaggaaagg 660 Query: 322 ggccgttcgagaacctgcagcagcacctggccgacccatggcacaacaccat 373 | |||||||| ||| ||| ||| || ||| | || ||||||||||||||||| Sbjct: 661 gcccgttcgacaacttgctgcaacatctgtctgatccatggcacaacaccat 712
>emb|X82497.1|NTCAG4 N.tabacum mRNA for light-harvesting Ch1 a/b binding protein Length = 726 Score = 85.7 bits (43), Expect = 1e-13 Identities = 96/114 (84%) Strand = Plus / Plus Query: 54 tccacgctcttcgtcatcgagttcatcctcttccactacgtcgagatccggcggtggcag 113 ||||| || ||||| |||||||||||| | |||||||||||||||||| | ||||||| Sbjct: 262 tccaccctgttcgtgatcgagttcatcttgttccactacgtcgagatcagaaggtggcaa 321 Query: 114 gacatcaagaacccgggctccgtcaaccaggaccccatcttcaagagctacagc 167 |||||||||||||| || || ||||| | |||||||||||||| ||||||| Sbjct: 322 gacatcaagaacccaggaagtgttaaccaagnccccatcttcaagaactacagc 375 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 352 ccgacccatggcacaacaccat 373 |||||||||||||||||||||| Sbjct: 560 ccgacccatggcacaacaccat 581
>emb|X57706.1|LECAB11 L.esculentum DNA for CAB11 gene Length = 1393 Score = 77.8 bits (39), Expect = 4e-11 Identities = 72/83 (86%) Strand = Plus / Plus Query: 297 gtgcagcacaacgtgaccgggaaggggccgttcgagaacctgcagcagcacctggccgac 356 ||||||||||| ||||| |||||||| || || || ||||| | ||||||||| | ||| Sbjct: 1110 gtgcagcacaatgtgactgggaagggaccttttgacaaccttctgcagcacctctctgac 1169 Query: 357 ccatggcacaacaccatcatcca 379 ||||||||||||||||||||||| Sbjct: 1170 ccatggcacaacaccatcatcca 1192 Score = 77.8 bits (39), Expect = 4e-11 Identities = 84/99 (84%) Strand = Plus / Plus Query: 69 atcgagttcatcctcttccactacgtcgagatccggcggtggcaggacatcaagaacccg 128 |||||||||||| | |||||||||||||||||| | ||||||| ||||| |||||||| Sbjct: 805 atcgagttcatcttgttccactacgtcgagatcagaaggtggcaagacattaagaaccca 864 Query: 129 ggctccgtcaaccaggaccccatcttcaagagctacagc 167 || |||||||| ||||| |||||||||| ||||||| Sbjct: 865 ggaagtgtcaaccaagaccctatcttcaagaactacagc 903
>emb|AJ579711.2|BVU579711 Beta vulgaris mRNA for chloroplast chlorophyll a/b binding protein (cab11 gene) Length = 1062 Score = 71.9 bits (36), Expect = 2e-09 Identities = 117/144 (81%) Strand = Plus / Plus Query: 239 caaggagaaggagctcgccaacgggagactggccatgctggcgttcctggggttcctggt 298 ||||||||||||||| || || |||||| |||| ||| |||| ||| | || ||| | || Sbjct: 714 caaggagaaggagcttgctaatgggagattggcaatgttggcattcttaggattcattgt 773 Query: 299 gcagcacaacgtgaccgggaaggggccgttcgagaacctgcagcagcacctggccgaccc 358 ||| ||||| ||||| || |||||||| || || ||||| | |||||| || | ||||| Sbjct: 774 gcaacacaatgtgactggaaaggggccttttgataaccttctgcagcatctatcagaccc 833 Query: 359 atggcacaacaccatcatccagac 382 ||||||||||||||| || ||||| Sbjct: 834 atggcacaacaccattattcagac 857 Score = 48.1 bits (24), Expect = 0.031 Identities = 48/56 (85%) Strand = Plus / Plus Query: 72 gagttcatcctcttccactacgtcgagatccggcggtggcaggacatcaagaaccc 127 ||||||||| | |||||||| || ||||| || | |||||||||||||||||||| Sbjct: 547 gagttcatcttattccactatgtggagataaggagatggcaggacatcaagaaccc 602
>emb|AJ309094.1|PPI309094 Pinus pinaster mRNA for putative chlorophyll a/b-binding protein type 4 Length = 819 Score = 71.9 bits (36), Expect = 2e-09 Identities = 138/172 (80%) Strand = Plus / Plus Query: 202 tcttcaaccccctcaacttcgcccccaccctcgagaacaaggagaaggagctcgccaacg 261 |||||||||| ||||||||| |||| || | ||| ||||||||||||||| ||||| | Sbjct: 572 tcttcaacccgctcaacttctccccatccatggaggccaaggagaaggagcttgccaatg 631 Query: 262 ggagactggccatgctggcgttcctggggttcctggtgcagcacaacgtgaccgggaagg 321 |||| |||| ||| | || |||||||| || | ||||| ||||| || || || |||| Sbjct: 632 ggaggttggcaatgttagcattcctgggatttgtagtgcaacacaatgtaacaggaaagg 691 Query: 322 ggccgttcgagaacctgcagcagcacctggccgacccatggcacaacaccat 373 | |||||||| ||| ||| ||| || ||| | || ||||||||||||||||| Sbjct: 692 gcccgttcgacaacttgctgcaacatctgtctgatccatggcacaacaccat 743
>gb|BC002118.1| Mus musculus cDNA clone MGC:6623 IMAGE:3491066, complete cds Length = 1008 Score = 71.9 bits (36), Expect = 2e-09 Identities = 117/144 (81%) Strand = Plus / Plus Query: 239 caaggagaaggagctcgccaacgggagactggccatgctggcgttcctggggttcctggt 298 ||||||||||||||| || || |||||| |||| ||| |||| ||| | || ||| | || Sbjct: 630 caaggagaaggagcttgctaatgggagattggcaatgttggcattcttaggattcattgt 689 Query: 299 gcagcacaacgtgaccgggaaggggccgttcgagaacctgcagcagcacctggccgaccc 358 ||| ||||| ||||| || |||||||| || || ||||| | |||||| || | ||||| Sbjct: 690 gcaacacaatgtgactggaaaggggccttttgataaccttctgcagcatctatcagaccc 749 Query: 359 atggcacaacaccatcatccagac 382 ||||||||||||||| || ||||| Sbjct: 750 atggcacaacaccattattcagac 773 Score = 48.1 bits (24), Expect = 0.031 Identities = 48/56 (85%) Strand = Plus / Plus Query: 72 gagttcatcctcttccactacgtcgagatccggcggtggcaggacatcaagaaccc 127 ||||||||| | |||||||| || ||||| || | |||||||||||||||||||| Sbjct: 463 gagttcatcttattccactatgtggagataaggagatggcaggacatcaagaaccc 518
>gb|AY233205.1| Vitis vinifera chlorophyll a/b-binding protein (Lhca1) mRNA, partial cds; nuclear gene for chloroplast product Length = 476 Score = 65.9 bits (33), Expect = 1e-07 Identities = 213/273 (78%) Strand = Plus / Plus Query: 107 gtggcaggacatcaagaacccgggctccgtcaaccaggaccccatcttcaagagctacag 166 ||||||||||||||||||||| || || |||||||| ||||| ||||||| |||||| Sbjct: 1 gtggcaggacatcaagaacccaggaagtgtgaaccaggatcccattttcaagaactacag 60 Query: 167 cctcccgccccacgagtgcggctaccccggcagcgtcttcaaccccctcaacttcgcccc 226 | | || ||| | ||| || |||||||| | | ||||||||||| ||||| || || Sbjct: 61 cttacctcccaatgaggtgggttaccccggtggtattttcaaccccctgaactttgcacc 120 Query: 227 caccctcgagaacaaggagaaggagctcgccaacgggagactggccatgctggcgttcct 286 || ||| |||||| ||||| || || ||||||||| | || ||| |||| ||||| Sbjct: 121 aactgaggaggccaaggaaaaggaacttgctaacgggagattagcaatgttggcattcct 180 Query: 287 ggggttcctggtgcagcacaacgtgaccgggaaggggccgttcgagaacctgcagcagca 346 |||||| | || || ||||||||||| || || ||||| || || ||||| |||||| Sbjct: 181 ggggtttattgttcaacacaacgtgactggaaaagggccatttgacaacctcttgcagca 240 Query: 347 cctggccgacccatggcacaacaccatcatcca 379 | | | |||||||||||||||||||||||||| Sbjct: 241 catctcagacccatggcacaacaccatcatcca 273
>gb|AF359128.1| Pinus sylvestris plus tree E1101 LHC I type IV chlorophyll binding protein (LHCA4) gene, partial cds; nuclear gene for chloroplast product Length = 498 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 202 tcttcaaccccctcaacttcgcccccaccctcgagaacaaggagaaggagctcgccaa 259 |||||||||| ||||||||| |||| || | ||| ||||||||||||||||||||| Sbjct: 261 tcttcaaccctctcaacttctccccatccatggaggccaaggagaaggagctcgccaa 318
>gb|AF359127.1| Pinus sylvestris plus tree E635C LHC I type IV chlorophyll binding protein (LHCA4) gene, partial cds; nuclear gene for chloroplast product Length = 521 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 202 tcttcaaccccctcaacttcgcccccaccctcgagaacaaggagaaggagctcgccaa 259 |||||||||| ||||||||| |||| || | ||| ||||||||||||||||||||| Sbjct: 261 tcttcaaccctctcaacttctccccatccatggaggccaaggagaaggagctcgccaa 318
>ref|NM_114615.3| Arabidopsis thaliana CAB4; chlorophyll binding AT3G47470 (CAB4) mRNA, complete cds Length = 1266 Score = 50.1 bits (25), Expect = 0.008 Identities = 55/65 (84%) Strand = Plus / Plus Query: 63 ttcgtcatcgagttcatcctcttccactacgtcgagatccggcggtggcaggacatcaag 122 ||||| ||||||||||| | || || ||||| |||||| | |||||||| ||||||||| Sbjct: 687 ttcgtgatcgagttcatattgtttcattacgttgagatcagacggtggcaagacatcaag 746 Query: 123 aaccc 127 ||||| Sbjct: 747 aaccc 751 Score = 48.1 bits (24), Expect = 0.031 Identities = 105/132 (79%) Strand = Plus / Plus Query: 239 caaggagaaggagctcgccaacgggagactggccatgctggcgttcctggggttcctggt 298 ||||||||| ||||| || |||||||| |||| ||| |||| ||| | ||||| |||| Sbjct: 863 caaggagaaagagctagcaaacgggaggttggcgatgttggcattcttagggtttgtggt 922 Query: 299 gcagcacaacgtgaccgggaaggggccgttcgagaacctgcagcagcacctggccgaccc 358 || ||||| ||||| || || || || || ||||| ||| ||||||| || | ||||| Sbjct: 923 tcaacacaatgtgactggaaaaggaccatttgagaatctgttgcagcacttgtctgaccc 982 Query: 359 atggcacaacac 370 |||||||||||| Sbjct: 983 atggcacaacac 994
>gb|BT000093.1| Arabidopsis thaliana chlorophyll A-B binding protein 4 precursor homolog (At3g47470) mRNA, complete cds Length = 891 Score = 50.1 bits (25), Expect = 0.008 Identities = 55/65 (84%) Strand = Plus / Plus Query: 63 ttcgtcatcgagttcatcctcttccactacgtcgagatccggcggtggcaggacatcaag 122 ||||| ||||||||||| | || || ||||| |||||| | |||||||| ||||||||| Sbjct: 427 ttcgtgatcgagttcatattgtttcattacgttgagatcagacggtggcaagacatcaag 486 Query: 123 aaccc 127 ||||| Sbjct: 487 aaccc 491 Score = 48.1 bits (24), Expect = 0.031 Identities = 105/132 (79%) Strand = Plus / Plus Query: 239 caaggagaaggagctcgccaacgggagactggccatgctggcgttcctggggttcctggt 298 ||||||||| ||||| || |||||||| |||| ||| |||| ||| | ||||| |||| Sbjct: 603 caaggagaaagagctagcaaacgggaggttggcgatgttggcattcttagggtttgtggt 662 Query: 299 gcagcacaacgtgaccgggaaggggccgttcgagaacctgcagcagcacctggccgaccc 358 || ||||| ||||| || || || || || ||||| ||| ||||||| || | ||||| Sbjct: 663 tcaacacaatgtgactggaaaaggaccatttgagaatctgttgcagcacttgtctgaccc 722 Query: 359 atggcacaacac 370 |||||||||||| Sbjct: 723 atggcacaacac 734
>emb|AL132955.1|ATF1P2 Arabidopsis thaliana DNA chromosome 3, BAC clone F1P2 Length = 101154 Score = 50.1 bits (25), Expect = 0.008 Identities = 55/65 (84%) Strand = Plus / Minus Query: 63 ttcgtcatcgagttcatcctcttccactacgtcgagatccggcggtggcaggacatcaag 122 ||||| ||||||||||| | || || ||||| |||||| | |||||||| ||||||||| Sbjct: 7389 ttcgtgatcgagttcatattgtttcattacgttgagatcagacggtggcaagacatcaag 7330 Query: 123 aaccc 127 ||||| Sbjct: 7329 aaccc 7325
>gb|AY093080.1| Arabidopsis thaliana chlorophyll A-B binding protein 4 precursor homolog (At3g47470) mRNA, complete cds Length = 1055 Score = 50.1 bits (25), Expect = 0.008 Identities = 55/65 (84%) Strand = Plus / Plus Query: 63 ttcgtcatcgagttcatcctcttccactacgtcgagatccggcggtggcaggacatcaag 122 ||||| ||||||||||| | || || ||||| |||||| | |||||||| ||||||||| Sbjct: 527 ttcgtgatcgagttcatattgtttcattacgttgagatcagacggtggcaagacatcaag 586 Query: 123 aaccc 127 ||||| Sbjct: 587 aaccc 591 Score = 48.1 bits (24), Expect = 0.031 Identities = 105/132 (79%) Strand = Plus / Plus Query: 239 caaggagaaggagctcgccaacgggagactggccatgctggcgttcctggggttcctggt 298 ||||||||| ||||| || |||||||| |||| ||| |||| ||| | ||||| |||| Sbjct: 703 caaggagaaagagctagcaaacgggaggttggcgatgttggcattcttagggtttgtggt 762 Query: 299 gcagcacaacgtgaccgggaaggggccgttcgagaacctgcagcagcacctggccgaccc 358 || ||||| ||||| || || || || || ||||| ||| ||||||| || | ||||| Sbjct: 763 tcaacacaatgtgactggaaaaggaccatttgagaatctgttgcagcacttgtctgaccc 822 Query: 359 atggcacaacac 370 |||||||||||| Sbjct: 823 atggcacaacac 834
>gb|AF325012.2|AF325012 Arabidopsis thaliana AT3g47470 (AT3g47470/F1P2_20) mRNA, complete cds Length = 715 Score = 50.1 bits (25), Expect = 0.008 Identities = 55/65 (84%) Strand = Plus / Plus Query: 63 ttcgtcatcgagttcatcctcttccactacgtcgagatccggcggtggcaggacatcaag 122 ||||| ||||||||||| | || || ||||| |||||| | |||||||| ||||||||| Sbjct: 144 ttcgtgatcgagttcatattgtttcattacgttgagatcagacggtggcaagacatcaag 203 Query: 123 aaccc 127 ||||| Sbjct: 204 aaccc 208 Score = 48.1 bits (24), Expect = 0.031 Identities = 105/132 (79%) Strand = Plus / Plus Query: 239 caaggagaaggagctcgccaacgggagactggccatgctggcgttcctggggttcctggt 298 ||||||||| ||||| || |||||||| |||| ||| |||| ||| | ||||| |||| Sbjct: 320 caaggagaaagagctagcaaacgggaggttggcgatgttggcattcttagggtttgtggt 379 Query: 299 gcagcacaacgtgaccgggaaggggccgttcgagaacctgcagcagcacctggccgaccc 358 || ||||| ||||| || || || || || ||||| ||| ||||||| || | ||||| Sbjct: 380 tcaacacaatgtgactggaaaaggaccatttgagaatctgttgcagcacttgtctgaccc 439 Query: 359 atggcacaacac 370 |||||||||||| Sbjct: 440 atggcacaacac 451
>emb|BX826089.1|CNS0A6C9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL84ZA10 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 973 Score = 50.1 bits (25), Expect = 0.008 Identities = 55/65 (84%) Strand = Plus / Plus Query: 63 ttcgtcatcgagttcatcctcttccactacgtcgagatccggcggtggcaggacatcaag 122 ||||| ||||||||||| | || || ||||| |||||| | |||||||| ||||||||| Sbjct: 517 ttcgtgatcgagttcatattgtttcattacgttgagatcagacggtggcaagacatcaag 576 Query: 123 aaccc 127 ||||| Sbjct: 577 aaccc 581 Score = 48.1 bits (24), Expect = 0.031 Identities = 105/132 (79%) Strand = Plus / Plus Query: 239 caaggagaaggagctcgccaacgggagactggccatgctggcgttcctggggttcctggt 298 ||||||||| ||||| || |||||||| |||| ||| |||| ||| | ||||| |||| Sbjct: 693 caaggagaaagagctagcaaacgggaggttggcgatgttggcattcttagggtttgtggt 752 Query: 299 gcagcacaacgtgaccgggaaggggccgttcgagaacctgcagcagcacctggccgaccc 358 || ||||| ||||| || || || || || ||||| ||| ||||||| || | ||||| Sbjct: 753 tcaacacaatgtgactggaaaaggaccatttgagaatctgttgcagcacttgtctgaccc 812 Query: 359 atggcacaacac 370 |||||||||||| Sbjct: 813 atggcacaacac 824
>emb|BX825536.1|CNS0A6EC Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL42ZH07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1035 Score = 50.1 bits (25), Expect = 0.008 Identities = 55/65 (84%) Strand = Plus / Plus Query: 63 ttcgtcatcgagttcatcctcttccactacgtcgagatccggcggtggcaggacatcaag 122 ||||| ||||||||||| | || || ||||| |||||| | |||||||| ||||||||| Sbjct: 514 ttcgtgatcgagttcatattgtttcattacgttgagatcagacggtggcaagacatcaag 573 Query: 123 aaccc 127 ||||| Sbjct: 574 aaccc 578
>emb|BX823268.1|CNS0A6MH Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS18ZF07 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1046 Score = 50.1 bits (25), Expect = 0.008 Identities = 55/65 (84%) Strand = Plus / Plus Query: 63 ttcgtcatcgagttcatcctcttccactacgtcgagatccggcggtggcaggacatcaag 122 ||||| ||||||||||| | || || ||||| |||||| | |||||||| ||||||||| Sbjct: 501 ttcgtgatcgagttcatattgtttcattacgttgagatcagacggtggcaagacatcaag 560 Query: 123 aaccc 127 ||||| Sbjct: 561 aaccc 565 Score = 48.1 bits (24), Expect = 0.031 Identities = 105/132 (79%) Strand = Plus / Plus Query: 239 caaggagaaggagctcgccaacgggagactggccatgctggcgttcctggggttcctggt 298 ||||||||| ||||| || |||||||| |||| ||| |||| ||| | ||||| |||| Sbjct: 677 caaggagaaagagctagcaaacgggaggttggcgatgttggcattcttagggtttgtggt 736 Query: 299 gcagcacaacgtgaccgggaaggggccgttcgagaacctgcagcagcacctggccgaccc 358 || ||||| ||||| || || || || || ||||| ||| ||||||| || | ||||| Sbjct: 737 tcaacacaatgtgactggaaaaggaccatttgagaatctgttgcagcacttgtctgaccc 796 Query: 359 atggcacaacac 370 |||||||||||| Sbjct: 797 atggcacaacac 808
>gb|AY086470.1| Arabidopsis thaliana clone 2531 mRNA, complete sequence Length = 1267 Score = 50.1 bits (25), Expect = 0.008 Identities = 55/65 (84%) Strand = Plus / Plus Query: 63 ttcgtcatcgagttcatcctcttccactacgtcgagatccggcggtggcaggacatcaag 122 ||||| ||||||||||| | || || ||||| |||||| | |||||||| ||||||||| Sbjct: 688 ttcgtgatcgagttcatattgtttcattacgttgagatcagacggtggcaagacatcaag 747 Query: 123 aaccc 127 ||||| Sbjct: 748 aaccc 752 Score = 48.1 bits (24), Expect = 0.031 Identities = 105/132 (79%) Strand = Plus / Plus Query: 239 caaggagaaggagctcgccaacgggagactggccatgctggcgttcctggggttcctggt 298 ||||||||| ||||| || |||||||| |||| ||| |||| ||| | ||||| |||| Sbjct: 864 caaggagaaagagctagcaaacgggaggttggcgatgttggcattcttagggtttgtggt 923 Query: 299 gcagcacaacgtgaccgggaaggggccgttcgagaacctgcagcagcacctggccgaccc 358 || ||||| ||||| || || || || || ||||| ||| ||||||| || | ||||| Sbjct: 924 tcaacacaatgtgactggaaaaggaccatttgagaatctgttgcagcacttgtctgaccc 983 Query: 359 atggcacaacac 370 |||||||||||| Sbjct: 984 atggcacaacac 995
>gb|M63931.1|ATHCABM Arabidopsis thaliana light-harvesting chlorophyll a/b-binding protein (Cab4) mRNA, complete cds Length = 1050 Score = 50.1 bits (25), Expect = 0.008 Identities = 55/65 (84%) Strand = Plus / Plus Query: 63 ttcgtcatcgagttcatcctcttccactacgtcgagatccggcggtggcaggacatcaag 122 ||||| ||||||||||| | || || ||||| |||||| | |||||||| ||||||||| Sbjct: 497 ttcgtgatcgagttcatattgtttcattacgttgagatcagacggtggcaagacatcaag 556 Query: 123 aaccc 127 ||||| Sbjct: 557 aaccc 561 Score = 48.1 bits (24), Expect = 0.031 Identities = 105/132 (79%) Strand = Plus / Plus Query: 239 caaggagaaggagctcgccaacgggagactggccatgctggcgttcctggggttcctggt 298 ||||||||| ||||| || |||||||| |||| ||| |||| ||| | ||||| |||| Sbjct: 673 caaggagaaagagctagcaaacgggaggttggcgatgttggcattcttagggtttgtggt 732 Query: 299 gcagcacaacgtgaccgggaaggggccgttcgagaacctgcagcagcacctggccgaccc 358 || ||||| ||||| || || || || || ||||| ||| ||||||| || | ||||| Sbjct: 733 tcaacacaatgtgactggaaaaggaccatttgagaatctgttgcagcacttgtctgaccc 792 Query: 359 atggcacaacac 370 |||||||||||| Sbjct: 793 atggcacaacac 804
>gb|BT015429.1| Arabidopsis thaliana At3g47470 mRNA sequence Length = 405 Score = 48.1 bits (24), Expect = 0.031 Identities = 105/132 (79%) Strand = Plus / Plus Query: 239 caaggagaaggagctcgccaacgggagactggccatgctggcgttcctggggttcctggt 298 ||||||||| ||||| || |||||||| |||| ||| |||| ||| | ||||| |||| Sbjct: 252 caaggagaaagagctagcaaacgggaggttggcgatgttggcattcttagggtttgtggt 311 Query: 299 gcagcacaacgtgaccgggaaggggccgttcgagaacctgcagcagcacctggccgaccc 358 || ||||| ||||| || || || || || ||||| ||| ||||||| || | ||||| Sbjct: 312 tcaacacaatgtgactggaaaaggaccatttgagaatctgttgcagcacttgtctgaccc 371 Query: 359 atggcacaacac 370 |||||||||||| Sbjct: 372 atggcacaacac 383 Score = 46.1 bits (23), Expect = 0.12 Identities = 50/59 (84%) Strand = Plus / Plus Query: 69 atcgagttcatcctcttccactacgtcgagatccggcggtggcaggacatcaagaaccc 127 ||||||||||| | || || ||||| |||||| | |||||||| |||||||||||||| Sbjct: 82 atcgagttcatattgtttcattacgttgagatcagacggtggcaagacatcaagaaccc 140
>emb|BX824775.1|CNS0A6UB Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH71ZB01 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 508 Score = 48.1 bits (24), Expect = 0.031 Identities = 105/132 (79%) Strand = Plus / Plus Query: 239 caaggagaaggagctcgccaacgggagactggccatgctggcgttcctggggttcctggt 298 ||||||||| ||||| || |||||||| |||| ||| |||| ||| | ||||| |||| Sbjct: 166 caaggagaaagagctagcaaacgggaggttggcgatgttggcattcttagggtttgtggt 225 Query: 299 gcagcacaacgtgaccgggaaggggccgttcgagaacctgcagcagcacctggccgaccc 358 || ||||| ||||| || || || || || ||||| ||| ||||||| || | ||||| Sbjct: 226 tcaacacaatgtgactggaaaaggaccatttgagaatctgttgcagcacttgtctgaccc 285 Query: 359 atggcacaacac 370 |||||||||||| Sbjct: 286 atggcacaacac 297 Score = 44.1 bits (22), Expect = 0.49 Identities = 34/38 (89%) Strand = Plus / Plus Query: 90 tacgtcgagatccggcggtggcaggacatcaagaaccc 127 ||||| |||||| | |||||||| |||||||||||||| Sbjct: 17 tacgttgagatcagacggtggcaagacatcaagaaccc 54
>gb|AY109341.1| Zea mays CL4601_3 mRNA sequence Length = 1460 Score = 48.1 bits (24), Expect = 0.031 Identities = 24/24 (100%) Strand = Plus / Minus Query: 360 tggcacaacaccatcatccagacc 383 |||||||||||||||||||||||| Sbjct: 303 tggcacaacaccatcatccagacc 280
>gb|AC019013.2|AC019013 Genomic Sequence For Arabidopsis thaliana, Clone T5E15, Chromosome V, complete sequence Length = 114056 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 465 tgtacaaagtgtggaggagtagg 487 ||||||||||||||||||||||| Sbjct: 37504 tgtacaaagtgtggaggagtagg 37526
>ref|XM_747159.1| Aspergillus fumigatus Af293 septin (Afu1g08850) partial mRNA Length = 1041 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 56 cacgctcttcgtcatcgagttc 77 |||||||||||||||||||||| Sbjct: 682 cacgctcttcgtcatcgagttc 661
>gb|AC007852.9| Drosophila melanogaster clone BACR33A10, complete sequence Length = 186333 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 473 gtgtggaggagtaggtggcag 493 ||||||||||||||||||||| Sbjct: 11756 gtgtggaggagtaggtggcag 11776
>gb|AC007588.5| Drosophila melanogaster clone BACR30O03, complete sequence Length = 165177 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 473 gtgtggaggagtaggtggcag 493 ||||||||||||||||||||| Sbjct: 60677 gtgtggaggagtaggtggcag 60657
>emb|BX571658.1| Wolinella succinogenes, complete genome; segment 2/7 Length = 346792 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 33 gagacctacttcgcctcctcctcca 57 ||||||| ||||||||||||||||| Sbjct: 323434 gagaccttcttcgcctcctcctcca 323410
>gb|BC036687.1| Homo sapiens cDNA clone IMAGE:5259465 Length = 3993 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 524 ggtggtgaaactttgtccttg 544 ||||||||||||||||||||| Sbjct: 3785 ggtggtgaaactttgtccttg 3765
>gb|AC087550.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0016G17, complete sequence Length = 141041 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 acttcgcctcctcctccacgc 60 ||||||||||||||||||||| Sbjct: 116484 acttcgcctcctcctccacgc 116464
>gb|AC159237.2| Mus musculus BAC clone RP24-464G10 from chromosome 12, complete sequence Length = 222209 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 440 aattattattttggggtgctg 460 ||||||||||||||||||||| Sbjct: 97929 aattattattttggggtgctg 97909
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 acttcgcctcctcctccacgc 60 ||||||||||||||||||||| Sbjct: 15262785 acttcgcctcctcctccacgc 15262765
>ref|XM_392275.2| PREDICTED: Apis mellifera similar to ENSANGP00000012777 (LOC408740), mRNA Length = 1629 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 227 caccctcgagaacaaggagaa 247 ||||||||||||||||||||| Sbjct: 1002 caccctcgagaacaaggagaa 1022
>gb|AC090883.1|AC090883 Homo sapiens chromosome 3 clone RP11-117G9 map 3p, complete sequence Length = 172400 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 524 ggtggtgaaactttgtccttg 544 ||||||||||||||||||||| Sbjct: 170083 ggtggtgaaactttgtccttg 170063
>gb|AF276663.1|AF276663 Drosophila melanogaster comb (cg) gene, complete cds, alternatively spliced Length = 9504 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 473 gtgtggaggagtaggtggcag 493 ||||||||||||||||||||| Sbjct: 4324 gtgtggaggagtaggtggcag 4304
>gb|AC027125.5| Homo sapiens chromosome 3 clone RP11-584M7 map 3p, complete sequence Length = 173842 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 524 ggtggtgaaactttgtccttg 544 ||||||||||||||||||||| Sbjct: 111563 ggtggtgaaactttgtccttg 111543
>dbj|AK027185.1| Homo sapiens cDNA: FLJ23532 fis, clone LNG06911 Length = 3189 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 524 ggtggtgaaactttgtccttg 544 ||||||||||||||||||||| Sbjct: 2970 ggtggtgaaactttgtccttg 2950
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 366 aacaccatcatccagaccatc 386 ||||||||||||||||||||| Sbjct: 631582 aacaccatcatccagaccatc 631602
>gb|AY107739.1| Zea mays PCO089350 mRNA sequence Length = 645 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 164 cagcctcccgccccacgagtgcggc 188 |||||||| |||||||||||||||| Sbjct: 286 cagcctccagccccacgagtgcggc 310
>gb|AE003815.4| Drosophila melanogaster chromosome 2R, section 35 of 73 of the complete sequence Length = 229685 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 473 gtgtggaggagtaggtggcag 493 ||||||||||||||||||||| Sbjct: 31538 gtgtggaggagtaggtggcag 31518
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 acttcgcctcctcctccacgc 60 ||||||||||||||||||||| Sbjct: 15271026 acttcgcctcctcctccacgc 15271006
>gb|AC127582.4| Mus musculus BAC clone RP24-89J3 from 12, complete sequence Length = 217949 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 440 aattattattttggggtgctg 460 ||||||||||||||||||||| Sbjct: 9829 aattattattttggggtgctg 9849
>ref|NM_188089.1| Oryza sativa (japonica cultivar-group), Ozsa8521 predicted mRNA Length = 1089 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 363 cacaacaccatcatccagaccatctccg 390 |||||| ||||| ||||||||||||||| Sbjct: 982 cacaacgccatcctccagaccatctccg 1009
>ref|XM_514527.1| PREDICTED: Pan troglodytes ribosome binding protein 1 (LOC458109), mRNA Length = 7485 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 cctcctcctccacgctcttc 65 |||||||||||||||||||| Sbjct: 5809 cctcctcctccacgctcttc 5790
>gb|AE017351.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 11, complete sequence Length = 1019846 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 caaggagaaggagctcgcca 258 |||||||||||||||||||| Sbjct: 363839 caaggagaaggagctcgcca 363820
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 tcgcctcctcctccacgctc 62 |||||||||||||||||||| Sbjct: 669660 tcgcctcctcctccacgctc 669641
>emb|AL133520.5| Human DNA sequence from clone RP1-101A2 on chromosome 20, complete sequence Length = 47325 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 282 ttcctggggttcctggtgcagcac 305 ||||||||||||||||||| |||| Sbjct: 32848 ttcctggggttcctggtgctgcac 32871
>ref|XM_567806.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNK01210) partial mRNA Length = 1432 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 caaggagaaggagctcgcca 258 |||||||||||||||||||| Sbjct: 1077 caaggagaaggagctcgcca 1096
>gb|BC020482.1| Homo sapiens ribosome binding protein 1 homolog 180kDa (dog), mRNA (cDNA clone IMAGE:3919185) Length = 1638 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 cctcctcctccacgctcttc 65 |||||||||||||||||||| Sbjct: 1460 cctcctcctccacgctcttc 1441
>gb|AC024608.4| Mus musculus strain C57BL6/J chromosome 5 clone RP23-333I24, complete sequence Length = 215829 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 447 attttggggtgctgaggatg 466 |||||||||||||||||||| Sbjct: 132183 attttggggtgctgaggatg 132164
>gb|BC000099.2| Homo sapiens ribosome binding protein 1 homolog 180kDa (dog), mRNA (cDNA clone IMAGE:3509994), partial cds Length = 2069 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 cctcctcctccacgctcttc 65 |||||||||||||||||||| Sbjct: 1193 cctcctcctccacgctcttc 1174
>ref|XM_535195.2| PREDICTED: Canis familiaris similar to inter-alpha globulin inhibitor H2 polypeptide (LOC478011), mRNA Length = 2941 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 caacaccatcatccagacca 384 |||||||||||||||||||| Sbjct: 358 caacaccatcatccagacca 377
>gb|BC080526.1| Homo sapiens ribosome binding protein 1 homolog 180kDa (dog), mRNA (cDNA clone IMAGE:4561660) Length = 1951 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 cctcctcctccacgctcttc 65 |||||||||||||||||||| Sbjct: 1319 cctcctcctccacgctcttc 1300
>emb|AL139016.8| Human DNA sequence from clone RP4-658C17 on chromosome 1p11.1-13.3, complete sequence Length = 100643 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 cctcctcctccacgctcttc 65 |||||||||||||||||||| Sbjct: 28397 cctcctcctccacgctcttc 28378
>emb|AL132765.38|HSA462D18 Human DNA sequence from clone RP11-462D18 on chromosome 20 Contains the 5' end of the BFSP1 gene for beaded filament structural protein 1 (filensin), the DSTN gene for destrin (actin depolymerizing factor ADF), a ras-like pseudogene, the RRBP1 gene for ribosome binding protein 1 (dog 180 kDa homolog), the 5' end of the C20orf179 gene for chromosome 20 open reading frame 179 and two CpG islands, complete sequence Length = 166001 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 cctcctcctccacgctcttc 65 |||||||||||||||||||| Sbjct: 67121 cctcctcctccacgctcttc 67140
>emb|AL833822.1|HSM805097 Homo sapiens mRNA; cDNA DKFZp586A1420 (from clone DKFZp586A1420) Length = 2400 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 cctcctcctccacgctcttc 65 |||||||||||||||||||| Sbjct: 2223 cctcctcctccacgctcttc 2204
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 acaacaccatcatccagacc 383 |||||||||||||||||||| Sbjct: 172980 acaacaccatcatccagacc 172999
>gb|AF448525.1| Mytilus galloprovincialis precollagen-P mRNA, complete cds Length = 2781 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 276 ctggcgttcctggggttcctggtg 299 |||| ||||||||||||||||||| Sbjct: 1089 ctggtgttcctggggttcctggtg 1066
>emb|BX469902.7| Zebrafish DNA sequence from clone CH211-277G23 in linkage group 9, complete sequence Length = 179135 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 438 tgaattattattttggggtg 457 |||||||||||||||||||| Sbjct: 16922 tgaattattattttggggtg 16903
>ref|NM_004587.1| Homo sapiens ribosome binding protein 1 homolog 180kDa (dog) (RRBP1), mRNA Length = 3106 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 cctcctcctccacgctcttc 65 |||||||||||||||||||| Sbjct: 2228 cctcctcctccacgctcttc 2209
>dbj|AK093465.1| Homo sapiens cDNA FLJ36146 fis, clone TESTI2025117, highly similar to Homo sapiens ES/130 mRNA Length = 1648 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 cctcctcctccacgctcttc 65 |||||||||||||||||||| Sbjct: 793 cctcctcctccacgctcttc 774
>dbj|AB189167.1| Oryza sativa (japonica cultivar-group) OsIDHa mRNA for NAD-dependent isocitrate dehydrogenase a, complete cds Length = 1424 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 363 cacaacaccatcatccagaccatctccg 390 |||||| ||||| ||||||||||||||| Sbjct: 1108 cacaacgccatcctccagaccatctccg 1135
>gb|S68728.1| LHC Ib-21=light-harvesting complex I [Hordeum vulgare=barley, Prato, mRNA Chloroplast, 878 nt] Length = 878 Score = 40.1 bits (20), Expect = 7.6 Identities = 32/36 (88%) Strand = Plus / Plus Query: 258 aacgggagactggccatgctggcgttcctggggttc 293 |||||| | ||||| |||||||||||| |||||||| Sbjct: 508 aacgggcggctggcgatgctggcgttcgtggggttc 543
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 ctgcagcagcacctggccga 355 |||||||||||||||||||| Sbjct: 665722 ctgcagcagcacctggccga 665703
>ref|XM_393975.2| PREDICTED: Apis mellifera hypothetical LOC410496 (LOC410496), mRNA Length = 4959 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 41 cttcgcctcctcctccacgctctt 64 |||| ||||||||||||||||||| Sbjct: 1341 cttctcctcctcctccacgctctt 1318
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 363 cacaacaccatcatccagaccatctccg 390 |||||| ||||| ||||||||||||||| Sbjct: 9668687 cacaacgccatcctccagaccatctccg 9668714
>dbj|AP000836.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0038F12 Length = 190014 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 363 cacaacaccatcatccagaccatctccg 390 |||||| ||||| ||||||||||||||| Sbjct: 106690 cacaacgccatcctccagaccatctccg 106717
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 368 caccatcatccagaccatctccgg 391 |||| ||||||||||||||||||| Sbjct: 5018824 caccctcatccagaccatctccgg 5018847
>dbj|AB122118.1| Chlamydomonas reinhardtii LhcI-5 gene for light-harvesting chlorophyll-a/b protein of photosystem I, complete cds Length = 1886 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 129 ggctccgtcaaccaggaccccatcttca 156 |||||||| |||||||||||||||||| Sbjct: 1058 ggctccgtggaccaggaccccatcttca 1085
>gb|AF218305.1|AF218305 Hordeum vulgare chlorophyll a/b binding protein precursor (lhca1) mRNA, complete cds; nuclear gene for chloroplast product Length = 784 Score = 40.1 bits (20), Expect = 7.6 Identities = 32/36 (88%) Strand = Plus / Plus Query: 258 aacgggagactggccatgctggcgttcctggggttc 293 |||||| | ||||| |||||||||||| |||||||| Sbjct: 626 aacgggcggctggcgatgctggcgttcgtggggttc 661
>dbj|AK059596.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-D11, full insert sequence Length = 1522 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 363 cacaacaccatcatccagaccatctccg 390 |||||| ||||| ||||||||||||||| Sbjct: 1122 cacaacgccatcctccagaccatctccg 1149
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 58 cgctcttcgtcatcgagttcatcc 81 ||||||||||||||||| |||||| Sbjct: 4362320 cgctcttcgtcatcgaggtcatcc 4362343
>gb|AF082100.1|AF082100 Streptomyces sp. MA6548 FK506 peptide synthetase (fkbP), FK506 oxidase (fkbO), and FK506 polyketide synthase (fkbB) genes, complete cds Length = 28732 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 334 acctgcagcagcacctggccgacc 357 |||||||||||||||||| ||||| Sbjct: 3431 acctgcagcagcacctggacgacc 3454
>gb|AF006751.1|AF006751 Homo sapiens ES/130 mRNA, complete cds Length = 3106 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 cctcctcctccacgctcttc 65 |||||||||||||||||||| Sbjct: 2228 cctcctcctccacgctcttc 2209
>gb|M19529.1|PIGFSA Pig follistatin (FS) gene, complete cds Length = 6247 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 tcgcctcctcctccacgctc 62 |||||||||||||||||||| Sbjct: 2631 tcgcctcctcctccacgctc 2650
>dbj|AB037819.2| Homo sapiens mRNA for KIAA1398 protein, partial cds Length = 5468 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 cctcctcctccacgctcttc 65 |||||||||||||||||||| Sbjct: 4191 cctcctcctccacgctcttc 4172 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,255,424 Number of Sequences: 3902068 Number of extensions: 5255424 Number of successful extensions: 98857 Number of sequences better than 10.0: 95 Number of HSP's better than 10.0 without gapping: 95 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 98271 Number of HSP's gapped (non-prelim): 579 length of query: 562 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 539 effective length of database: 17,143,297,704 effective search space: 9240237462456 effective search space used: 9240237462456 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)