ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal30d02 |
|---|---|
| Clone Library Name | barley_pub |
>PSAF_HORVU (P13192) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 235 Score = 170 bits (431), Expect = 1e-42 Identities = 81/81 (100%), Positives = 81/81 (100%) Frame = +2 Query: 11 RHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWP 190 RHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWP Sbjct: 155 RHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWP 214 Query: 191 VAAYRELINGDLVVDDADIGY 253 VAAYRELINGDLVVDDADIGY Sbjct: 215 VAAYRELINGDLVVDDADIGY 235
>PSAF_SPIOL (P12355) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 231 Score = 127 bits (320), Expect = 1e-29 Identities = 57/73 (78%), Positives = 65/73 (89%) Frame = +2 Query: 11 RHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWP 190 RHWGEFITPG+LFLYIAGWIGWVGRSYLIA+ EKKP +EIIIDV LA+ ++ RGF WP Sbjct: 155 RHWGEFITPGILFLYIAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLASSLLFRGFSWP 214 Query: 191 VAAYRELINGDLV 229 VAAYREL+NG+LV Sbjct: 215 VAAYRELLNGELV 227
>PSAF_FLATR (P46486) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 232 Score = 126 bits (316), Expect = 3e-29 Identities = 55/73 (75%), Positives = 64/73 (87%) Frame = +2 Query: 11 RHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWP 190 RHWGEFITPG+LFLYIAGWIGWVGRSYLIA+ EKKP +EIIIDV LA +++ RGF WP Sbjct: 156 RHWGEFITPGILFLYIAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLATKLLFRGFSWP 215 Query: 191 VAAYRELINGDLV 229 VAAYRE +NG+L+ Sbjct: 216 VAAYREYLNGELI 228
>PSAF_SYNY3 (P29256) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 165 Score = 95.5 bits (236), Expect = 5e-20 Identities = 42/78 (53%), Positives = 58/78 (74%) Frame = +2 Query: 14 HWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPV 193 H G+F+ P +LFLYIAGWIGWVGRSYLI + K P M+E++I+V LA + + GF+WP+ Sbjct: 83 HAGDFLIPSILFLYIAGWIGWVGRSYLIEIRESKNPEMQEVVINVPLAIKKMLGGFLWPL 142 Query: 194 AAYRELINGDLVVDDADI 247 AA E +G LV+ D++I Sbjct: 143 AAVGEYTSGKLVMKDSEI 160
>PSAF_PORPU (P51193) Photosystem I reaction center subunit III (PSI-F)| Length = 185 Score = 94.7 bits (234), Expect = 9e-20 Identities = 40/76 (52%), Positives = 56/76 (73%) Frame = +2 Query: 20 GEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAA 199 G+F+ PG+LFLYI GWIGWVGR YL++V+ KP +EII+DV LA + + GF WP+AA Sbjct: 105 GDFVFPGLLFLYITGWIGWVGRGYLLSVAKTSKPTEKEIILDVPLAVKFMSSGFAWPLAA 164 Query: 200 YRELINGDLVVDDADI 247 ++E +G L+ + DI Sbjct: 165 WQEFSSGQLIAPNDDI 180
>PSAF_ODOSI (P49483) Photosystem I reaction center subunit III (PSI-F)| Length = 185 Score = 93.6 bits (231), Expect = 2e-19 Identities = 43/78 (55%), Positives = 56/78 (71%) Frame = +2 Query: 14 HWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPV 193 H EFI PG F+YI+GWIGWVGR YL AVS K P EIII+V LA +I+ G+IWP+ Sbjct: 103 HAAEFILPGFGFIYISGWIGWVGRKYLRAVSTTKNPTESEIIINVPLALKIMTTGYIWPI 162 Query: 194 AAYRELINGDLVVDDADI 247 +A++E I+ DLV D ++ Sbjct: 163 SAWQEFISNDLVALDEEV 180
>PSAF_GUITH (O78457) Photosystem I reaction center subunit III (PSI-F)| Length = 183 Score = 92.8 bits (229), Expect = 3e-19 Identities = 41/78 (52%), Positives = 55/78 (70%) Frame = +2 Query: 14 HWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPV 193 H GEF+ PG+ FLYIAGWIGWVGR+Y+ S KP +EIIIDV +A I G+IWP Sbjct: 101 HAGEFMVPGLFFLYIAGWIGWVGRNYVQFASQTDKPTEKEIIIDVPVALSFISTGYIWPF 160 Query: 194 AAYRELINGDLVVDDADI 247 AA++E +G+L+ + +I Sbjct: 161 AAFKEFTSGNLIAKEDEI 178
>PSAF_SYNEN (P0A402) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 92.0 bits (227), Expect = 6e-19 Identities = 43/76 (56%), Positives = 55/76 (72%) Frame = +2 Query: 20 GEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAA 199 G+F+ P VLFLYIAGWIGWVGR+YLIAV + +EIIIDV LA + + GF WP+AA Sbjct: 84 GDFLIPSVLFLYIAGWIGWVGRAYLIAVRNSGEANEKEIIIDVPLAIKCMLTGFAWPLAA 143 Query: 200 YRELINGDLVVDDADI 247 +EL +G+L D +I Sbjct: 144 LKELASGELTAKDNEI 159
>PSAF_SYNEL (P0A401) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 92.0 bits (227), Expect = 6e-19 Identities = 43/76 (56%), Positives = 55/76 (72%) Frame = +2 Query: 20 GEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAA 199 G+F+ P VLFLYIAGWIGWVGR+YLIAV + +EIIIDV LA + + GF WP+AA Sbjct: 84 GDFLIPSVLFLYIAGWIGWVGRAYLIAVRNSGEANEKEIIIDVPLAIKCMLTGFAWPLAA 143 Query: 200 YRELINGDLVVDDADI 247 +EL +G+L D +I Sbjct: 144 LKELASGELTAKDNEI 159
>PSAF_SYNP6 (P31083) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 159 Score = 91.3 bits (225), Expect = 1e-18 Identities = 42/78 (53%), Positives = 55/78 (70%) Frame = +2 Query: 14 HWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPV 193 H G+FI P +LFLYIAGWIGWVGRSYL A+ +K A +EI+IDV LA + GF WP+ Sbjct: 77 HAGDFIIPSLLFLYIAGWIGWVGRSYLQAIKSDKDAAGKEIVIDVPLAVKFSLTGFAWPL 136 Query: 194 AAYRELINGDLVVDDADI 247 AA++E +G L+ +I Sbjct: 137 AAFQEFSSGKLLAKADEI 154
>PSAF_ANAVT (P31091) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 89.4 bits (220), Expect = 4e-18 Identities = 39/76 (51%), Positives = 54/76 (71%) Frame = +2 Query: 20 GEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAA 199 G+F+ P +LFLYIAGWIGWVGR+YL A+ + +EI +D+ LA II GF WP AA Sbjct: 84 GDFLIPSILFLYIAGWIGWVGRAYLQAIKKDSDTEQKEIQLDLGLALPIIATGFAWPAAA 143 Query: 200 YRELINGDLVVDDADI 247 +EL++G+L D++I Sbjct: 144 VKELLSGELTAKDSEI 159
>PSAF_ANASP (P58564) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 88.6 bits (218), Expect = 7e-18 Identities = 38/76 (50%), Positives = 54/76 (71%) Frame = +2 Query: 20 GEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAA 199 G+F+ P +LFLYIAGWIGWVGR+YL A+ + +EI +D+ +A II GF WP AA Sbjct: 84 GDFLIPSILFLYIAGWIGWVGRAYLQAIKKDSDTEQKEIQLDLGIALPIIATGFAWPAAA 143 Query: 200 YRELINGDLVVDDADI 247 +EL++G+L D++I Sbjct: 144 VKELLSGELTAKDSEI 159
>PSAF_CYAPA (P48115) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 186 Score = 87.4 bits (215), Expect = 1e-17 Identities = 40/78 (51%), Positives = 54/78 (69%) Frame = +2 Query: 14 HWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPV 193 H GEF PG+LFLYIAG+IGW GRSYL AV+ +EIIID+ +A + + +GF+WP+ Sbjct: 104 HAGEFTIPGLLFLYIAGFIGWSGRSYLQAVAASDNSTEKEIIIDIPVALQSVSKGFVWPL 163 Query: 194 AAYRELINGDLVVDDADI 247 AA +E +G L D +I Sbjct: 164 AALQEFSSGKLTARDEEI 181
>PSAF_CHLRE (P12356) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) (P21 protein) Length = 227 Score = 80.5 bits (197), Expect = 2e-15 Identities = 41/78 (52%), Positives = 53/78 (67%) Frame = +2 Query: 14 HWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPV 193 H GE P FLY+AG+IG+VGR YLIAV GE KP +EIIIDV LA ++ +G WP+ Sbjct: 145 HAGEVFIPTFGFLYVAGYIGYVGRQYLIAVKGEAKPTDKEIIIDVPLATKLAWQGAGWPL 204 Query: 194 AAYRELINGDLVVDDADI 247 AA +EL G L+ + +I Sbjct: 205 AAVQELQRGTLLEKEENI 222
>PSAF_MASLA (O31127) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 165 Score = 79.7 bits (195), Expect = 3e-15 Identities = 36/79 (45%), Positives = 52/79 (65%), Gaps = 1/79 (1%) Frame = +2 Query: 14 HWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGE-KKPAMREIIIDVELAARIIPRGFIWP 190 H G+F+ P +LFLYIAGWIGWVGR+YL + + +EI I++ +A I+ GF WP Sbjct: 82 HAGDFLIPSILFLYIAGWIGWVGRAYLQTIKKQGSNVEQKEIQIELPIALPIMLSGFAWP 141 Query: 191 VAAYRELINGDLVVDDADI 247 AA +E ++G+L D +I Sbjct: 142 AAAIKEFLSGELTAKDEEI 160
>PSAF_CYACA (Q9TLW6) Photosystem I reaction center subunit III (PSI-F)| Length = 187 Score = 79.0 bits (193), Expect = 5e-15 Identities = 37/79 (46%), Positives = 48/79 (60%) Frame = +2 Query: 11 RHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWP 190 +H GEF P VLF+YIAGWIGW G+ YL KP EIIID+ A + + GF WP Sbjct: 104 QHSGEFFIPSVLFIYIAGWIGWAGKGYLQYSKTLTKPNENEIIIDLPRALKYMFSGFAWP 163 Query: 191 VAAYRELINGDLVVDDADI 247 + A +E NG L+ + +I Sbjct: 164 ILALKEFKNGSLLASNDEI 182
>PSAF_PROMA (Q9X7I4) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 183 Score = 72.0 bits (175), Expect = 6e-13 Identities = 36/78 (46%), Positives = 48/78 (61%) Frame = +2 Query: 14 HWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPV 193 H G+ + PG +F+Y+AG IGW GR YL A K PA EIIID LA + + +G WPV Sbjct: 100 HEGDILIPGHIFIYVAGIIGWSGREYLRASKKTKNPAENEIIIDFALARQCLIKGAAWPV 159 Query: 194 AAYRELINGDLVVDDADI 247 A ++ +GDL D +I Sbjct: 160 EANKQGRSGDLREKDENI 177
>PSAF_GLOVI (Q7NH05) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 181 Score = 65.1 bits (157), Expect = 8e-11 Identities = 35/73 (47%), Positives = 45/73 (61%) Frame = +2 Query: 20 GEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAA 199 G+F+ P VLFL+IAG +GW GR YL E K EIIID+ A + + G IWPV A Sbjct: 105 GDFLIPSVLFLWIAGALGWAGRLYL----AESKGPEDEIIIDLPKAIKCLLLGLIWPVQA 160 Query: 200 YRELINGDLVVDD 238 ELI+G + V + Sbjct: 161 IPELISGKIRVPE 173
>RDRP_MRNV (Q6XNL5) RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (RNA| replicase) Length = 1045 Score = 30.8 bits (68), Expect = 1.6 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = +2 Query: 284 SRSQVRWAAEDEGLWCRSVWAWCRS**DHGEMEPLLYLRN 403 S +QV + + G W VW WC D+GE LYL+N Sbjct: 217 SDNQVDYRVDGGGRWQHKVWNWC----DYGE---FLYLKN 249
>MADCA_HUMAN (Q13477) Mucosal addressin cell adhesion molecule 1 precursor| (MAdCAM-1) (hMAdCAM-1) Length = 406 Score = 29.6 bits (65), Expect = 3.6 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = -2 Query: 410 GFSFLNTREVPFLHDPISSYTKPTQIDTTSPHPP 309 G + + +P LH P T P DTTSP PP Sbjct: 212 GLELSHRQAIPVLHSP----TSPEPPDTTSPEPP 241
>YHBP_ECO57 (Q8XA94) UPF0306 protein yhbP| Length = 147 Score = 29.3 bits (64), Expect = 4.7 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = +2 Query: 257 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 343 L A+ WLA + V W + EG LWC + + Sbjct: 4 LTAISRWLAKQHVVTWCVQQEGELWCANAF 33
>YHBP_ECOL6 (Q8FD95) UPF0306 protein yhbP| Length = 140 Score = 29.3 bits (64), Expect = 4.7 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = +2 Query: 257 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 343 L A+ WLA + V W + EG LWC + + Sbjct: 4 LTAISRWLAKQHVVTWCVQQEGELWCANAF 33
>YHBP_SHIFL (P67763) UPF0306 protein yhbP| Length = 147 Score = 28.9 bits (63), Expect = 6.2 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = +2 Query: 257 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 343 L A+ WLA + V W + EG LWC + + Sbjct: 4 LIAISRWLAKQHVVTWCVQQEGELWCANAF 33
>YHBP_ECOLI (P67762) UPF0306 protein yhbP| Length = 147 Score = 28.9 bits (63), Expect = 6.2 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = +2 Query: 257 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 343 L A+ WLA + V W + EG LWC + + Sbjct: 4 LIAISRWLAKQHVVTWCVQQEGELWCANAF 33
>YFC5_YEAST (P43571) Hypothetical 117.8 kDa protein in STE2-FRS2 intergenic| region Length = 1029 Score = 28.9 bits (63), Expect = 6.2 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%) Frame = -3 Query: 448 FFLKREHNSYTRLGSVS*IQ--ERFHFSMILSAPTPSPHRSTPQALILRC 305 F L++ HN+YT++ S I E HF+++ S P + T + L C Sbjct: 439 FNLEKWHNNYTKINIPSNISSTEHLHFTLLTSLDMPMIYFCTESRVNLSC 488
>IF39_HUMAN (P55884) Eukaryotic translation initiation factor 3 subunit 9| (eIF-3 eta) (eIF3 p116) (eIF3 p110) (eIF3b) (Prt1 homolog) (hPrt1) Length = 814 Score = 28.9 bits (63), Expect = 6.2 Identities = 15/32 (46%), Positives = 17/32 (53%) Frame = -3 Query: 103 DGDEVAASDPADPAGDVEEEHAGGDELAPVPR 8 D DE + SDP D DV EE GD L P+ Sbjct: 147 DADEPSFSDPEDFVDDVSEEELLGDVLKDRPQ 178
>CLIC5_BOVIN (P35526) Chloride intracellular channel protein 5 (Chlorine channel| protein p64) Length = 437 Score = 28.5 bits (62), Expect = 8.1 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Frame = -3 Query: 109 AADGDEVAASDPADPAG-DVEEEHAGGDELAPVPRSP 2 A+D +E ASDP +P G D EE G+E+ SP Sbjct: 126 ASDPEEPQASDPEEPQGPDPEEPQENGNEMEADLPSP 162
>ATM_KLULA (Q6CP76) Serine/threonine-protein kinase TEL1 (EC 2.7.11.1)| (DNA-damage checkpoint kinase TEL1) (Telomere length regulation protein 1) (ATM homolog) Length = 2761 Score = 28.5 bits (62), Expect = 8.1 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = +1 Query: 376 NGTSLVFKKLNPILYNYCVLSSKK 447 N +F K+NP+L+N+CV K+ Sbjct: 1357 NVKKTLFPKVNPVLFNFCVSDGKQ 1380 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,737,190 Number of Sequences: 219361 Number of extensions: 1039880 Number of successful extensions: 3395 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 3153 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3389 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
