ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal30d02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|U08135.1|HVU08135 Hordeum vulgare photosystem-I PSI-F subunit precursor mRNA, complete cds Length = 990 Score = 850 bits (429), Expect = 0.0 Identities = 439/441 (99%), Gaps = 1/441 (0%) Strand = Plus / Plus Query: 1 gcggcgacc-gcggcactggggcgagttcatcacccccggcgtgctcttcctctacatcg 59 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 501 gcggcgaccagcggcactggggcgagttcatcacccccggcgtgctcttcctctacatcg 560 Query: 60 ccggctggatcggctgggtcggacgcagctacctcatcgccgtcagcggcgagaagaagc 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 561 ccggctggatcggctgggtcggacgcagctacctcatcgccgtcagcggcgagaagaagc 620 Query: 120 ccgccatgagggagatcatcatcgacgtcgagctcgccgccaggatcatccccaggggct 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 621 ccgccatgagggagatcatcatcgacgtcgagctcgccgccaggatcatccccaggggct 680 Query: 180 tcatctggcccgtcgccgcataccgcgagctcatcaacggcgacctcgtcgtcgacgacg 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 681 tcatctggcccgtcgccgcataccgcgagctcatcaacggcgacctcgtcgtcgacgacg 740 Query: 240 ccgacatcggctactaactagctgccatgcgtgcgtggttggctagtcggtcccaagtca 299 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 741 ccgacatcggctactaagtagctgccatgcgtgcgtggttggctagtcggtcccaagtca 800 Query: 300 gatgggcagcggaggatgagggcttgtggtgtcgatctgtgtgggcttggtgtaggagct 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 801 gatgggcagcggaggatgagggcttgtggtgtcgatctgtgtgggcttggtgtaggagct 860 Query: 360 gataggatcatggagaaatggaacctctcttgtatttaagaaactgaacccaatcttgta 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 861 gataggatcatggagaaatggaacctctcttgtatttaagaaactgaacccaatcttgta 920 Query: 420 taactattgtgttctctcttc 440 ||||||||||||||||||||| Sbjct: 921 taactattgtgttctctcttc 941
>ref|NM_184976.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1038 Score = 347 bits (175), Expect = 2e-92 Identities = 236/255 (92%), Gaps = 1/255 (0%) Strand = Plus / Plus Query: 1 gcggcgacc-gcggcactggggcgagttcatcacccccggcgtgctcttcctctacatcg 59 ||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||| Sbjct: 524 gcggcgaccagcggcactggggcgagttcatcaccccgggcttgctcttcctctacatcg 583 Query: 60 ccggctggatcggctgggtcggacgcagctacctcatcgccgtcagcggcgagaagaagc 119 |||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| Sbjct: 584 ccggctggatcggctgggtcggcaggagctacctcatcgccatcagcggcgagaagaagc 643 Query: 120 ccgccatgagggagatcatcatcgacgtcgagctcgccgccaggatcatccccaggggct 179 | ||||||||||||||||||||||||||||||||||||| || | || |||| ||||| | Sbjct: 644 cggccatgagggagatcatcatcgacgtcgagctcgccgtcaagctcctcccgagggggt 703 Query: 180 tcatctggcccgtcgccgcataccgcgagctcatcaacggcgacctcgtcgtcgacgacg 239 ||||||||||||||||||| ||||| |||||||||| |||| |||||||||||||||||| Sbjct: 704 tcatctggcccgtcgccgcctaccgtgagctcatcaccggcaacctcgtcgtcgacgacg 763 Query: 240 ccgacatcggctact 254 | ||||||||||||| Sbjct: 764 ctgacatcggctact 778 Score = 61.9 bits (31), Expect = 2e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 348 ggtgtaggagctgataggatcatggagaaatggaacctctcttgtatttaagaaa 402 ||||||| ||||||||||||||||||| ||||||| ||| ||||| |||||||| Sbjct: 867 ggtgtagaagctgataggatcatggaggaatggaagatctgttgtacttaagaaa 921
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 347 bits (175), Expect = 2e-92 Identities = 236/255 (92%), Gaps = 1/255 (0%) Strand = Plus / Minus Query: 1 gcggcgacc-gcggcactggggcgagttcatcacccccggcgtgctcttcctctacatcg 59 ||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||| Sbjct: 31969728 gcggcgaccagcggcactggggcgagttcatcaccccgggcttgctcttcctctacatcg 31969669 Query: 60 ccggctggatcggctgggtcggacgcagctacctcatcgccgtcagcggcgagaagaagc 119 |||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| Sbjct: 31969668 ccggctggatcggctgggtcggcaggagctacctcatcgccatcagcggcgagaagaagc 31969609 Query: 120 ccgccatgagggagatcatcatcgacgtcgagctcgccgccaggatcatccccaggggct 179 | ||||||||||||||||||||||||||||||||||||| || | || |||| ||||| | Sbjct: 31969608 cggccatgagggagatcatcatcgacgtcgagctcgccgtcaagctcctcccgagggggt 31969549 Query: 180 tcatctggcccgtcgccgcataccgcgagctcatcaacggcgacctcgtcgtcgacgacg 239 ||||||||||||||||||| ||||| |||||||||| |||| |||||||||||||||||| Sbjct: 31969548 tcatctggcccgtcgccgcctaccgtgagctcatcaccggcaacctcgtcgtcgacgacg 31969489 Query: 240 ccgacatcggctact 254 | ||||||||||||| Sbjct: 31969488 ctgacatcggctact 31969474 Score = 61.9 bits (31), Expect = 2e-06 Identities = 49/55 (89%) Strand = Plus / Minus Query: 348 ggtgtaggagctgataggatcatggagaaatggaacctctcttgtatttaagaaa 402 ||||||| ||||||||||||||||||| ||||||| ||| ||||| |||||||| Sbjct: 31969273 ggtgtagaagctgataggatcatggaggaatggaagatctgttgtacttaagaaa 31969219
>gb|AC084748.11| Oryza sativa chromosome 3 BAC OSJNBa0010I09 genomic sequence, complete sequence Length = 144306 Score = 347 bits (175), Expect = 2e-92 Identities = 236/255 (92%), Gaps = 1/255 (0%) Strand = Plus / Minus Query: 1 gcggcgacc-gcggcactggggcgagttcatcacccccggcgtgctcttcctctacatcg 59 ||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||| Sbjct: 61680 gcggcgaccagcggcactggggcgagttcatcaccccgggcttgctcttcctctacatcg 61621 Query: 60 ccggctggatcggctgggtcggacgcagctacctcatcgccgtcagcggcgagaagaagc 119 |||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| Sbjct: 61620 ccggctggatcggctgggtcggcaggagctacctcatcgccatcagcggcgagaagaagc 61561 Query: 120 ccgccatgagggagatcatcatcgacgtcgagctcgccgccaggatcatccccaggggct 179 | ||||||||||||||||||||||||||||||||||||| || | || |||| ||||| | Sbjct: 61560 cggccatgagggagatcatcatcgacgtcgagctcgccgtcaagctcctcccgagggggt 61501 Query: 180 tcatctggcccgtcgccgcataccgcgagctcatcaacggcgacctcgtcgtcgacgacg 239 ||||||||||||||||||| ||||| |||||||||| |||| |||||||||||||||||| Sbjct: 61500 tcatctggcccgtcgccgcctaccgtgagctcatcaccggcaacctcgtcgtcgacgacg 61441 Query: 240 ccgacatcggctact 254 | ||||||||||||| Sbjct: 61440 ctgacatcggctact 61426 Score = 61.9 bits (31), Expect = 2e-06 Identities = 49/55 (89%) Strand = Plus / Minus Query: 348 ggtgtaggagctgataggatcatggagaaatggaacctctcttgtatttaagaaa 402 ||||||| ||||||||||||||||||| ||||||| ||| ||||| |||||||| Sbjct: 61225 ggtgtagaagctgataggatcatggaggaatggaagatctgttgtacttaagaaa 61171
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 347 bits (175), Expect = 2e-92 Identities = 236/255 (92%), Gaps = 1/255 (0%) Strand = Plus / Minus Query: 1 gcggcgacc-gcggcactggggcgagttcatcacccccggcgtgctcttcctctacatcg 59 ||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||| Sbjct: 32060240 gcggcgaccagcggcactggggcgagttcatcaccccgggcttgctcttcctctacatcg 32060181 Query: 60 ccggctggatcggctgggtcggacgcagctacctcatcgccgtcagcggcgagaagaagc 119 |||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| Sbjct: 32060180 ccggctggatcggctgggtcggcaggagctacctcatcgccatcagcggcgagaagaagc 32060121 Query: 120 ccgccatgagggagatcatcatcgacgtcgagctcgccgccaggatcatccccaggggct 179 | ||||||||||||||||||||||||||||||||||||| || | || |||| ||||| | Sbjct: 32060120 cggccatgagggagatcatcatcgacgtcgagctcgccgtcaagctcctcccgagggggt 32060061 Query: 180 tcatctggcccgtcgccgcataccgcgagctcatcaacggcgacctcgtcgtcgacgacg 239 ||||||||||||||||||| ||||| |||||||||| |||| |||||||||||||||||| Sbjct: 32060060 tcatctggcccgtcgccgcctaccgtgagctcatcaccggcaacctcgtcgtcgacgacg 32060001 Query: 240 ccgacatcggctact 254 | ||||||||||||| Sbjct: 32060000 ctgacatcggctact 32059986 Score = 61.9 bits (31), Expect = 2e-06 Identities = 49/55 (89%) Strand = Plus / Minus Query: 348 ggtgtaggagctgataggatcatggagaaatggaacctctcttgtatttaagaaa 402 ||||||| ||||||||||||||||||| ||||||| ||| ||||| |||||||| Sbjct: 32059785 ggtgtagaagctgataggatcatggaggaatggaagatctgttgtacttaagaaa 32059731
>dbj|AK069791.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031N02, full insert sequence Length = 967 Score = 347 bits (175), Expect = 2e-92 Identities = 236/255 (92%), Gaps = 1/255 (0%) Strand = Plus / Plus Query: 1 gcggcgacc-gcggcactggggcgagttcatcacccccggcgtgctcttcctctacatcg 59 ||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||| Sbjct: 488 gcggcgaccagcggcactggggcgagttcatcaccccgggcttgctcttcctctacatcg 547 Query: 60 ccggctggatcggctgggtcggacgcagctacctcatcgccgtcagcggcgagaagaagc 119 |||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| Sbjct: 548 ccggctggatcggctgggtcggcaggagctacctcatcgccatcagcggcgagaagaagc 607 Query: 120 ccgccatgagggagatcatcatcgacgtcgagctcgccgccaggatcatccccaggggct 179 | ||||||||||||||||||||||||||||||||||||| || | || |||| ||||| | Sbjct: 608 cggccatgagggagatcatcatcgacgtcgagctcgccgtcaagctcctcccgagggggt 667 Query: 180 tcatctggcccgtcgccgcataccgcgagctcatcaacggcgacctcgtcgtcgacgacg 239 ||||||||||||||||||| ||||| |||||||||| |||| |||||||||||||||||| Sbjct: 668 tcatctggcccgtcgccgcctaccgtgagctcatcaccggcaacctcgtcgtcgacgacg 727 Query: 240 ccgacatcggctact 254 | ||||||||||||| Sbjct: 728 ctgacatcggctact 742 Score = 61.9 bits (31), Expect = 2e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 348 ggtgtaggagctgataggatcatggagaaatggaacctctcttgtatttaagaaa 402 ||||||| ||||||||||||||||||| ||||||| ||| ||||| |||||||| Sbjct: 836 ggtgtagaagctgataggatcatggaggaatggaagatctgttgtacttaagaaa 890
>dbj|AK060493.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-D02, full insert sequence Length = 997 Score = 347 bits (175), Expect = 2e-92 Identities = 236/255 (92%), Gaps = 1/255 (0%) Strand = Plus / Plus Query: 1 gcggcgacc-gcggcactggggcgagttcatcacccccggcgtgctcttcctctacatcg 59 ||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||| Sbjct: 523 gcggcgaccagcggcactggggcgagttcatcaccccgggcttgctcttcctctacatcg 582 Query: 60 ccggctggatcggctgggtcggacgcagctacctcatcgccgtcagcggcgagaagaagc 119 |||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| Sbjct: 583 ccggctggatcggctgggtcggcaggagctacctcatcgccatcagcggcgagaagaagc 642 Query: 120 ccgccatgagggagatcatcatcgacgtcgagctcgccgccaggatcatccccaggggct 179 | ||||||||||||||||||||||||||||||||||||| || | || |||| ||||| | Sbjct: 643 cggccatgagggagatcatcatcgacgtcgagctcgccgtcaagctcctcccgagggggt 702 Query: 180 tcatctggcccgtcgccgcataccgcgagctcatcaacggcgacctcgtcgtcgacgacg 239 ||||||||||||||||||| ||||| |||||||||| |||| |||||||||||||||||| Sbjct: 703 tcatctggcccgtcgccgcctaccgtgagctcatcaccggcaacctcgtcgtcgacgacg 762 Query: 240 ccgacatcggctact 254 | ||||||||||||| Sbjct: 763 ctgacatcggctact 777 Score = 61.9 bits (31), Expect = 2e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 348 ggtgtaggagctgataggatcatggagaaatggaacctctcttgtatttaagaaa 402 ||||||| ||||||||||||||||||| ||||||| ||| ||||| |||||||| Sbjct: 866 ggtgtagaagctgataggatcatggaggaatggaagatctgttgtacttaagaaa 920
>dbj|AK059890.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-C12, full insert sequence Length = 990 Score = 347 bits (175), Expect = 2e-92 Identities = 236/255 (92%), Gaps = 1/255 (0%) Strand = Plus / Plus Query: 1 gcggcgacc-gcggcactggggcgagttcatcacccccggcgtgctcttcctctacatcg 59 ||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||| Sbjct: 511 gcggcgaccagcggcactggggcgagttcatcaccccgggcttgctcttcctctacatcg 570 Query: 60 ccggctggatcggctgggtcggacgcagctacctcatcgccgtcagcggcgagaagaagc 119 |||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| Sbjct: 571 ccggctggatcggctgggtcggcaggagctacctcatcgccatcagcggcgagaagaagc 630 Query: 120 ccgccatgagggagatcatcatcgacgtcgagctcgccgccaggatcatccccaggggct 179 | ||||||||||||||||||||||||||||||||||||| || | || |||| ||||| | Sbjct: 631 cggccatgagggagatcatcatcgacgtcgagctcgccgtcaagctcctcccgagggggt 690 Query: 180 tcatctggcccgtcgccgcataccgcgagctcatcaacggcgacctcgtcgtcgacgacg 239 ||||||||||||||||||| ||||| |||||||||| |||| |||||||||||||||||| Sbjct: 691 tcatctggcccgtcgccgcctaccgtgagctcatcaccggcaacctcgtcgtcgacgacg 750 Query: 240 ccgacatcggctact 254 | ||||||||||||| Sbjct: 751 ctgacatcggctact 765 Score = 61.9 bits (31), Expect = 2e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 348 ggtgtaggagctgataggatcatggagaaatggaacctctcttgtatttaagaaa 402 ||||||| ||||||||||||||||||| ||||||| ||| ||||| |||||||| Sbjct: 859 ggtgtagaagctgataggatcatggaggaatggaagatctgttgtacttaagaaa 913
>gb|AF093634.1|AF093634 Oryza sativa photosystem-1 F subunit precursor (PSI-F) mRNA, complete cds Length = 996 Score = 347 bits (175), Expect = 2e-92 Identities = 236/255 (92%), Gaps = 1/255 (0%) Strand = Plus / Plus Query: 1 gcggcgacc-gcggcactggggcgagttcatcacccccggcgtgctcttcctctacatcg 59 ||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||| Sbjct: 504 gcggcgaccagcggcactggggcgagttcatcaccccgggcttgctcttcctctacatcg 563 Query: 60 ccggctggatcggctgggtcggacgcagctacctcatcgccgtcagcggcgagaagaagc 119 |||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| Sbjct: 564 ccggctggatcggctgggtcggcaggagctacctcatcgccatcagcggcgagaagaagc 623 Query: 120 ccgccatgagggagatcatcatcgacgtcgagctcgccgccaggatcatccccaggggct 179 | ||||||||||||||||||||||||||||||||||||| || | || |||| ||||| | Sbjct: 624 cggccatgagggagatcatcatcgacgtcgagctcgccgtcaagctcctcccgagggggt 683 Query: 180 tcatctggcccgtcgccgcataccgcgagctcatcaacggcgacctcgtcgtcgacgacg 239 ||||||||||||||||||| ||||| |||||||||| |||| |||||||||||||||||| Sbjct: 684 tcatctggcccgtcgccgcctaccgtgagctcatcaccggcaacctcgtcgtcgacgacg 743 Query: 240 ccgacatcggctact 254 | ||||||||||||| Sbjct: 744 ctgacatcggctact 758 Score = 61.9 bits (31), Expect = 2e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 348 ggtgtaggagctgataggatcatggagaaatggaacctctcttgtatttaagaaa 402 ||||||| ||||||||||||||||||| ||||||| ||| ||||| |||||||| Sbjct: 847 ggtgtagaagctgataggatcatggaggaatggaagatctgttgtacttaagaaa 901
>gb|AY103687.1| Zea mays PCO106710 mRNA sequence Length = 1242 Score = 327 bits (165), Expect = 2e-86 Identities = 242/265 (91%), Gaps = 2/265 (0%) Strand = Plus / Plus Query: 1 gcggcgacc-gcggcactggggcgagttcatcacccccggcgtgctcttcctctacatcg 59 ||||||||| ||||||||||||||||||| ||||||| ||| |||||||||||||||||| Sbjct: 539 gcggcgaccagcggcactggggcgagttcgtcaccccgggcctgctcttcctctacatcg 598 Query: 60 ccggctggatcggctgggtcggacgcagctacctcatcgccgtcagcggcgagaagaagc 119 |||| |||||||| |||||||| | ||||||||||||||| |||||||||||||||||| Sbjct: 599 ccgggtggatcgggtgggtcggcaggagctacctcatcgccatcagcggcgagaagaagc 658 Query: 120 ccgccatgagggagatcatcatcgacgtcgagctcgccgccaggatcatccccaggggct 179 |||||||||||||||||||||||||||||||||||||| || | || |||||||||| | Sbjct: 659 ccgccatgagggagatcatcatcgacgtcgagctcgccacccgcctcctccccagggggt 718 Query: 180 tcatctggcccgtcgccgcataccgcgagctcatcaacggcgacctcgtcgtcgacgacg 239 |||||||||||||||| || |||||||||||||||||||| |||||||||||||||||| Sbjct: 719 tcatctggcccgtcgcggcctaccgcgagctcatcaacggagacctcgtcgtcgacgaca 778 Query: 240 ccgacatcggctactaactagctgc 264 ||||||||||||| ||||||||| Sbjct: 779 aggacatcggctact-actagctgc 802
>gb|AF139468.2|AF139468 Vigna radiata photosystem I reaction center subunit III (CipPsaF) mRNA, complete cds; nuclear gene for chloroplast product Length = 885 Score = 79.8 bits (40), Expect = 7e-12 Identities = 112/136 (82%) Strand = Plus / Plus Query: 12 ggcactggggcgagttcatcacccccggcgtgctcttcctctacatcgccggctggatcg 71 |||||||||||||||||||||| || || | || ||||| ||||||||||| ||||||| Sbjct: 516 ggcactggggcgagttcatcactcctgggttcctattcctgtacatcgccgggtggatcg 575 Query: 72 gctgggtcggacgcagctacctcatcgccgtcagcggcgagaagaagcccgccatgaggg 131 | ||||| || || |||||||| || ||| |||| | ||||| || || | |||| || Sbjct: 576 ggtgggtgggtcggagctaccttattgccatcagggatgagaaaaaaccgacgatgaagg 635 Query: 132 agatcatcatcgacgt 147 |||||||||||||||| Sbjct: 636 agatcatcatcgacgt 651
>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome Length = 2696255 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 26 ttcatcacccccggcgtgctcttcctctacatcgccggctggatcggctgggt 78 ||||||| |||| || |||| ||||||||||||||||||||||| |||||||| Sbjct: 346784 ttcatcatccccagcttgctgttcctctacatcgccggctggattggctgggt 346836
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome Length = 2695903 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 26 ttcatcacccccggcgtgctcttcctctacatcgccggctggatcggctgggt 78 ||||||| |||| || |||| ||||||||||||||||||||||| |||||||| Sbjct: 1274020 ttcatcatccccagcttgctgttcctctacatcgccggctggattggctgggt 1273968
>emb|BX814457.1|CNS0ADUS Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB75ZA08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 411 Score = 54.0 bits (27), Expect = 4e-04 Identities = 108/135 (80%) Strand = Plus / Plus Query: 10 gcggcactggggcgagttcatcacccccggcgtgctcttcctctacatcgccggctggat 69 |||||| ||||| |||||||| || || || | || ||||||||||| || || ||||| Sbjct: 78 gcggcattggggagagttcattactccagggattcttttcctctacattgctggatggat 137 Query: 70 cggctgggtcggacgcagctacctcatcgccgtcagcggcgagaagaagcccgccatgag 129 ||| ||||| ||| | |||||| |||| || | || || |||||||| ||||| |||| Sbjct: 138 cgggtgggttggaagaagctacttcatagctattagtggtgagaagaaacccgcgatgaa 197 Query: 130 ggagatcatcatcga 144 |||||||||||||| Sbjct: 198 agagatcatcatcga 212
>emb|X63765.1|SSPPSAFJ9 Synechococcus sp. genes psaF, psaJ and rp19 for photosystem I subunit III, subunit X and ribosomal protein RL9 Length = 1592 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 41 gtgctcttcctctacatcgccggctggatcggctgggt 78 ||||||||||| |||||||| |||||||| |||||||| Sbjct: 475 gtgctcttcctgtacatcgctggctggattggctgggt 512
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 20 ggcgagttcatcacccccggcgtgctcttcctctacatcgccggctggatcggctggg 77 |||||||| ||| ||| ||| |||| ||||||||||||||||||||| | ||||||| Sbjct: 300358 ggcgagtttctcatccctggcctgcttttcctctacatcgccggctggctgggctggg 300301
>dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete genome Length = 2593857 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 41 gtgctcttcctctacatcgccggctggatcggctgggt 78 ||||||||||| |||||||| |||||||| |||||||| Sbjct: 2524247 gtgctcttcctgtacatcgctggctggattggctgggt 2524284
>ref|NM_102871.3| Arabidopsis thaliana unknown protein AT1G31330 mRNA, complete cds Length = 925 Score = 46.1 bits (23), Expect = 0.098 Identities = 107/135 (79%) Strand = Plus / Plus Query: 10 gcggcactggggcgagttcatcacccccggcgtgctcttcctctacatcgccggctggat 69 |||||| ||||| |||||||| || || || | || ||||||||||| || || ||||| Sbjct: 504 gcggcattggggagagttcattactccagggattcttttcctctacattgctggatggat 563 Query: 70 cggctgggtcggacgcagctacctcatcgccgtcagcggcgagaagaagcccgccatgag 129 ||| ||||| ||| | |||||| | || || | || || |||||||| ||||| |||| Sbjct: 564 cgggtgggttggaagaagctacttaatagctattagtggtgagaagaaacccgcgatgaa 623 Query: 130 ggagatcatcatcga 144 |||||||||||||| Sbjct: 624 agagatcatcatcga 638
>gb|BT000680.1| Arabidopsis thaliana clone RAFL05-09-F03 (R10152) putative photosystem I reaction centre subunit III precursor (At1g31330) mRNA, complete cds Length = 859 Score = 46.1 bits (23), Expect = 0.098 Identities = 107/135 (79%) Strand = Plus / Plus Query: 10 gcggcactggggcgagttcatcacccccggcgtgctcttcctctacatcgccggctggat 69 |||||| ||||| |||||||| || || || | || ||||||||||| || || ||||| Sbjct: 476 gcggcattggggagagttcattactccagggattcttttcctctacattgctggatggat 535 Query: 70 cggctgggtcggacgcagctacctcatcgccgtcagcggcgagaagaagcccgccatgag 129 ||| ||||| ||| | |||||| | || || | || || |||||||| ||||| |||| Sbjct: 536 cgggtgggttggaagaagctacttaatagctattagtggtgagaagaaacccgcgatgaa 595 Query: 130 ggagatcatcatcga 144 |||||||||||||| Sbjct: 596 agagatcatcatcga 610
>gb|AY051021.1| Arabidopsis thaliana putative photosystem I subunit III precursor (At1g31330) mRNA, complete cds Length = 697 Score = 46.1 bits (23), Expect = 0.098 Identities = 107/135 (79%) Strand = Plus / Plus Query: 10 gcggcactggggcgagttcatcacccccggcgtgctcttcctctacatcgccggctggat 69 |||||| ||||| |||||||| || || || | || ||||||||||| || || ||||| Sbjct: 432 gcggcattggggagagttcattactccagggattcttttcctctacattgctggatggat 491 Query: 70 cggctgggtcggacgcagctacctcatcgccgtcagcggcgagaagaagcccgccatgag 129 ||| ||||| ||| | |||||| | || || | || || |||||||| ||||| |||| Sbjct: 492 cgggtgggttggaagaagctacttaatagctattagtggtgagaagaaacccgcgatgaa 551 Query: 130 ggagatcatcatcga 144 |||||||||||||| Sbjct: 552 agagatcatcatcga 566
>gb|AF360251.1| Arabidopsis thaliana putative photosystem I subunit III precursor (At1g31330) mRNA, complete cds Length = 821 Score = 46.1 bits (23), Expect = 0.098 Identities = 107/135 (79%) Strand = Plus / Plus Query: 10 gcggcactggggcgagttcatcacccccggcgtgctcttcctctacatcgccggctggat 69 |||||| ||||| |||||||| || || || | || ||||||||||| || || ||||| Sbjct: 476 gcggcattggggagagttcattactccagggattcttttcctctacattgctggatggat 535 Query: 70 cggctgggtcggacgcagctacctcatcgccgtcagcggcgagaagaagcccgccatgag 129 ||| ||||| ||| | |||||| | || || | || || |||||||| ||||| |||| Sbjct: 536 cgggtgggttggaagaagctacttaatagctattagtggtgagaagaaacccgcgatgaa 595 Query: 130 ggagatcatcatcga 144 |||||||||||||| Sbjct: 596 agagatcatcatcga 610
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 46.1 bits (23), Expect = 0.098 Identities = 50/59 (84%) Strand = Plus / Plus Query: 19 gggcgagttcatcacccccggcgtgctcttcctctacatcgccggctggatcggctggg 77 ||||||||| ||| ||||||| |||| || |||||||||||||| ||| | ||||||| Sbjct: 2927198 gggcgagtttctcatccccggcttgctttttctctacatcgccggttggctgggctggg 2927256
>gb|AY094015.1| Arabidopsis thaliana At1g31330/T19E23_1 mRNA, complete cds Length = 666 Score = 46.1 bits (23), Expect = 0.098 Identities = 107/135 (79%) Strand = Plus / Plus Query: 10 gcggcactggggcgagttcatcacccccggcgtgctcttcctctacatcgccggctggat 69 |||||| ||||| |||||||| || || || | || ||||||||||| || || ||||| Sbjct: 432 gcggcattggggagagttcattactccagggattcttttcctctacattgctggatggat 491 Query: 70 cggctgggtcggacgcagctacctcatcgccgtcagcggcgagaagaagcccgccatgag 129 ||| ||||| ||| | |||||| | || || | || || |||||||| ||||| |||| Sbjct: 492 cgggtgggttggaagaagctacttaatagctattagtggtgagaagaaacccgcgatgaa 551 Query: 130 ggagatcatcatcga 144 |||||||||||||| Sbjct: 552 agagatcatcatcga 566
>gb|AY062712.1| Arabidopsis thaliana similar to photosystem I reaction centre subunit III precursor (At1g31330; T19E23.12) mRNA, complete cds Length = 805 Score = 46.1 bits (23), Expect = 0.098 Identities = 107/135 (79%) Strand = Plus / Plus Query: 10 gcggcactggggcgagttcatcacccccggcgtgctcttcctctacatcgccggctggat 69 |||||| ||||| |||||||| || || || | || ||||||||||| || || ||||| Sbjct: 476 gcggcattggggagagttcattactccagggattcttttcctctacattgctggatggat 535 Query: 70 cggctgggtcggacgcagctacctcatcgccgtcagcggcgagaagaagcccgccatgag 129 ||| ||||| ||| | |||||| | || || | || || |||||||| ||||| |||| Sbjct: 536 cgggtgggttggaagaagctacttaatagctattagtggtgagaagaaacccgcgatgaa 595 Query: 130 ggagatcatcatcga 144 |||||||||||||| Sbjct: 596 agagatcatcatcga 610
>gb|AF424564.1|AF424564 Arabidopsis thaliana At1g31330/T19E23_1 mRNA, complete cds Length = 859 Score = 46.1 bits (23), Expect = 0.098 Identities = 107/135 (79%) Strand = Plus / Plus Query: 10 gcggcactggggcgagttcatcacccccggcgtgctcttcctctacatcgccggctggat 69 |||||| ||||| |||||||| || || || | || ||||||||||| || || ||||| Sbjct: 476 gcggcattggggagagttcattactccagggattcttttcctctacattgctggatggat 535 Query: 70 cggctgggtcggacgcagctacctcatcgccgtcagcggcgagaagaagcccgccatgag 129 ||| ||||| ||| | |||||| | || || | || || |||||||| ||||| |||| Sbjct: 536 cgggtgggttggaagaagctacttaatagctattagtggtgagaagaaacccgcgatgaa 595 Query: 130 ggagatcatcatcga 144 |||||||||||||| Sbjct: 596 agagatcatcatcga 610
>gb|AY052281.1| Arabidopsis thaliana At1g31330/T19E23_1 mRNA, complete cds Length = 1737 Score = 46.1 bits (23), Expect = 0.098 Identities = 107/135 (79%) Strand = Plus / Plus Query: 10 gcggcactggggcgagttcatcacccccggcgtgctcttcctctacatcgccggctggat 69 |||||| ||||| |||||||| || || || | || ||||||||||| || || ||||| Sbjct: 1357 gcggcattggggagagttcattactccagggattcttttcctctacattgctggatggat 1416 Query: 70 cggctgggtcggacgcagctacctcatcgccgtcagcggcgagaagaagcccgccatgag 129 ||| ||||| ||| | |||||| | || || | || || |||||||| ||||| |||| Sbjct: 1417 cgggtgggttggaagaagctacttaatagctattagtggtgagaagaaacccgcgatgaa 1476 Query: 130 ggagatcatcatcga 144 |||||||||||||| Sbjct: 1477 agagatcatcatcga 1491
>gb|AY048220.1| Arabidopsis thaliana At1g31330/T19E23_1 mRNA, complete cds Length = 820 Score = 46.1 bits (23), Expect = 0.098 Identities = 107/135 (79%) Strand = Plus / Plus Query: 10 gcggcactggggcgagttcatcacccccggcgtgctcttcctctacatcgccggctggat 69 |||||| ||||| |||||||| || || || | || ||||||||||| || || ||||| Sbjct: 493 gcggcattggggagagttcattactccagggattcttttcctctacattgctggatggat 552 Query: 70 cggctgggtcggacgcagctacctcatcgccgtcagcggcgagaagaagcccgccatgag 129 ||| ||||| ||| | |||||| | || || | || || |||||||| ||||| |||| Sbjct: 553 cgggtgggttggaagaagctacttaatagctattagtggtgagaagaaacccgcgatgaa 612 Query: 130 ggagatcatcatcga 144 |||||||||||||| Sbjct: 613 agagatcatcatcga 627
>emb|BX818241.1|CNS0AEDF Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL69ZD07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 776 Score = 46.1 bits (23), Expect = 0.098 Identities = 107/135 (79%) Strand = Plus / Plus Query: 10 gcggcactggggcgagttcatcacccccggcgtgctcttcctctacatcgccggctggat 69 |||||| ||||| |||||||| || || || | || ||||||||||| || || ||||| Sbjct: 443 gcggcattggggagagttcattactccagggattcttttcctctacattgctggatggat 502 Query: 70 cggctgggtcggacgcagctacctcatcgccgtcagcggcgagaagaagcccgccatgag 129 ||| ||||| ||| | |||||| | || || | || || |||||||| ||||| |||| Sbjct: 503 cgggtgggttggaagaagctacttaatagctattagtggtgagaagaaacccgcgatgaa 562 Query: 130 ggagatcatcatcga 144 |||||||||||||| Sbjct: 563 agagatcatcatcga 577
>emb|BX814304.1|CNS0AEI0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB67ZC10 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 811 Score = 46.1 bits (23), Expect = 0.098 Identities = 107/135 (79%) Strand = Plus / Plus Query: 10 gcggcactggggcgagttcatcacccccggcgtgctcttcctctacatcgccggctggat 69 |||||| ||||| |||||||| || || || | || ||||||||||| || || ||||| Sbjct: 464 gcggcattggggagagttcattactccagggattcttttcctctacattgctggatggat 523 Query: 70 cggctgggtcggacgcagctacctcatcgccgtcagcggcgagaagaagcccgccatgag 129 ||| ||||| ||| | |||||| | || || | || || |||||||| ||||| |||| Sbjct: 524 cgggtgggttggaagaagctacttaatagctattagtggtgagaagaaacccgcgatgaa 583 Query: 130 ggagatcatcatcga 144 |||||||||||||| Sbjct: 584 agagatcatcatcga 598
>emb|BX815295.1|CNS0ACV1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS4ZF05 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 817 Score = 46.1 bits (23), Expect = 0.098 Identities = 107/135 (79%) Strand = Plus / Plus Query: 10 gcggcactggggcgagttcatcacccccggcgtgctcttcctctacatcgccggctggat 69 |||||| ||||| |||||||| || || || | || ||||||||||| || || ||||| Sbjct: 485 gcggcattggggagagttcattactccagggattcttttcctctacattgctggatggat 544 Query: 70 cggctgggtcggacgcagctacctcatcgccgtcagcggcgagaagaagcccgccatgag 129 ||| ||||| ||| | |||||| | || || | || || |||||||| ||||| |||| Sbjct: 545 cgggtgggttggaagaagctacttaatagctattagtggtgagaagaaacccgcgatgaa 604 Query: 130 ggagatcatcatcga 144 |||||||||||||| Sbjct: 605 agagatcatcatcga 619
>emb|BX814897.1|CNS0ACW2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS17ZC11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 824 Score = 46.1 bits (23), Expect = 0.098 Identities = 107/135 (79%) Strand = Plus / Plus Query: 10 gcggcactggggcgagttcatcacccccggcgtgctcttcctctacatcgccggctggat 69 |||||| ||||| |||||||| || || || | || ||||||||||| || || ||||| Sbjct: 493 gcggcattggggagagttcattactccagggattcttttcctctacattgctggatggat 552 Query: 70 cggctgggtcggacgcagctacctcatcgccgtcagcggcgagaagaagcccgccatgag 129 ||| ||||| ||| | |||||| | || || | || || |||||||| ||||| |||| Sbjct: 553 cgggtgggttggaagaagctacttaatagctattagtggtgagaagaaacccgcgatgaa 612 Query: 130 ggagatcatcatcga 144 |||||||||||||| Sbjct: 613 agagatcatcatcga 627
>gb|AC007654.2|AC007654 Genomic sequence for Arabidopsis thaliana BAC T19E23 from chromosome I, complete sequence Length = 87618 Score = 46.1 bits (23), Expect = 0.098 Identities = 107/135 (79%) Strand = Plus / Minus Query: 10 gcggcactggggcgagttcatcacccccggcgtgctcttcctctacatcgccggctggat 69 |||||| ||||| |||||||| || || || | || ||||||||||| || || ||||| Sbjct: 55737 gcggcattggggagagttcattactccagggattcttttcctctacattgctggatggat 55678 Query: 70 cggctgggtcggacgcagctacctcatcgccgtcagcggcgagaagaagcccgccatgag 129 ||| ||||| ||| | |||||| | || || | || || |||||||| ||||| |||| Sbjct: 55677 cgggtgggttggaagaagctacttaatagctattagtggtgagaagaaacccgcgatgaa 55618 Query: 130 ggagatcatcatcga 144 |||||||||||||| Sbjct: 55617 agagatcatcatcga 55603
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 46.1 bits (23), Expect = 0.098 Identities = 32/35 (91%) Strand = Plus / Minus Query: 44 ctcttcctctacatcgccggctggatcggctgggt 78 |||||||||||||| ||||| |||||||| ||||| Sbjct: 111398 ctcttcctctacattgccggttggatcggttgggt 111364
>gb|BT002099.1| Arabidopsis thaliana similar to photosystem I reaction centre subunit III precursor (At1g31330) mRNA, complete cds Length = 699 Score = 46.1 bits (23), Expect = 0.098 Identities = 107/135 (79%) Strand = Plus / Plus Query: 10 gcggcactggggcgagttcatcacccccggcgtgctcttcctctacatcgccggctggat 69 |||||| ||||| |||||||| || || || | || ||||||||||| || || ||||| Sbjct: 432 gcggcattggggagagttcattactccagggattcttttcctctacattgctggatggat 491 Query: 70 cggctgggtcggacgcagctacctcatcgccgtcagcggcgagaagaagcccgccatgag 129 ||| ||||| ||| | |||||| | || || | || || |||||||| ||||| |||| Sbjct: 492 cgggtgggttggaagaagctacttaatagctattagtggtgagaagaaacccgcgatgaa 551 Query: 130 ggagatcatcatcga 144 |||||||||||||| Sbjct: 552 agagatcatcatcga 566
>ref|NM_197599.1| Oryza sativa (japonica cultivar-group) mucin-like protein (OSJNBb0015I11.17), mRNA Length = 1110 Score = 44.1 bits (22), Expect = 0.39 Identities = 31/34 (91%) Strand = Plus / Plus Query: 216 acggcgacctcgtcgtcgacgacgccgacatcgg 249 |||||| ||| ||||||| ||||||||||||||| Sbjct: 353 acggcggccttgtcgtcgccgacgccgacatcgg 386
>emb|AL590464.1|SCO590464 Streptomyces coelicolor plasmid SCP1; segment 2/2 Length = 178073 Score = 44.1 bits (22), Expect = 0.39 Identities = 31/34 (91%) Strand = Plus / Minus Query: 217 cggcgacctcgtcgtcgacgacgccgacatcggc 250 |||||| ||||||||||||| ||| ||||||||| Sbjct: 38065 cggcgagctcgtcgtcgacggcgcggacatcggc 38032
>emb|AL590463.1|SCO590463 Streptomyces coelicolor plasmid SCP1; segment 1/2 Length = 178000 Score = 44.1 bits (22), Expect = 0.39 Identities = 31/34 (91%) Strand = Plus / Plus Query: 217 cggcgacctcgtcgtcgacgacgccgacatcggc 250 |||||| ||||||||||||| ||| ||||||||| Sbjct: 127557 cggcgagctcgtcgtcgacggcgcggacatcggc 127590
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 223 cctcgtcgtcgacgacgccgac 244 |||||||||||||||||||||| Sbjct: 1139213 cctcgtcgtcgacgacgccgac 1139192
>dbj|AK106264.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-F10, full insert sequence Length = 1488 Score = 44.1 bits (22), Expect = 0.39 Identities = 31/34 (91%) Strand = Plus / Plus Query: 216 acggcgacctcgtcgtcgacgacgccgacatcgg 249 |||||| ||| ||||||| ||||||||||||||| Sbjct: 29 acggcggccttgtcgtcgccgacgccgacatcgg 62
>gb|M83119.1|FTRPHOTOI Flaveria trinervia photosystem I subunit III (psaF) gene, complete cds Length = 824 Score = 44.1 bits (22), Expect = 0.39 Identities = 55/66 (83%) Strand = Plus / Plus Query: 17 tggggcgagttcatcacccccggcgtgctcttcctctacatcgccggctggatcggctgg 76 |||||||| || ||||||||||| | || || || |||||||| || |||||||| ||| Sbjct: 477 tggggcgaatttatcacccccgggattctatttctgtacatcgctggatggatcgggtgg 536 Query: 77 gtcgga 82 |||||| Sbjct: 537 gtcgga 542
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 30 tcacccccggcgtgctcttcc 50 ||||||||||||||||||||| Sbjct: 3154508 tcacccccggcgtgctcttcc 3154528
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 acctcgtcgtcgacgacgccg 242 ||||||||||||||||||||| Sbjct: 1949429 acctcgtcgtcgacgacgccg 1949449
>emb|BX248343.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 10/14 Length = 307550 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 30 tcacccccggcgtgctcttcc 50 ||||||||||||||||||||| Sbjct: 299314 tcacccccggcgtgctcttcc 299334
>emb|BX842581.1| Mycobacterium tuberculosis H37Rv complete genome; segment 10/13 Length = 348676 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 30 tcacccccggcgtgctcttcc 50 ||||||||||||||||||||| Sbjct: 41261 tcacccccggcgtgctcttcc 41281
>gb|AC051633.7| Oryza sativa chromosome 10 BAC OSJNBb0015I11 genomic sequence, complete sequence Length = 138824 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 216 acggcgacctcgtcgtcgacgacgccgacatcg 248 |||||| ||| ||||||| |||||||||||||| Sbjct: 107045 acggcggccttgtcgtcgccgacgccgacatcg 107077
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 226 cgtcgtcgacgacgccgacatcggc 250 |||||||||||||| |||||||||| Sbjct: 18403072 cgtcgtcgacgacgacgacatcggc 18403096 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 223 cctcgtcgtcgacgacgccg 242 |||||||||||||||||||| Sbjct: 12249167 cctcgtcgtcgacgacgccg 12249186
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 216 acggcgacctcgtcgtcgacgacgccgacatcg 248 |||||| ||| ||||||| |||||||||||||| Sbjct: 20705593 acggcggccttgtcgtcgccgacgccgacatcg 20705625 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 ctcgtcgtcgacgacgccga 243 |||||||||||||||||||| Sbjct: 21068367 ctcgtcgtcgacgacgccga 21068348
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 211 catcaacggcgacctcgtcgtcgac 235 |||| |||||||||||||||||||| Sbjct: 1766734 catcgacggcgacctcgtcgtcgac 1766710
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 216 acggcgacctcgtcgtcgacgacgccgacatcg 248 |||||| ||| ||||||| |||||||||||||| Sbjct: 20716865 acggcggccttgtcgtcgccgacgccgacatcg 20716897 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 ctcgtcgtcgacgacgccga 243 |||||||||||||||||||| Sbjct: 21079631 ctcgtcgtcgacgacgccga 21079612
>emb|AL607003.3|OSJN00130 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0006N15, complete sequence Length = 133413 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 226 cgtcgtcgacgacgccgacatcggc 250 |||||||||||||| |||||||||| Sbjct: 104995 cgtcgtcgacgacgacgacatcggc 105019
>ref|XM_471550.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 837 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 223 cctcgtcgtcgacgacgccg 242 |||||||||||||||||||| Sbjct: 195 cctcgtcgtcgacgacgccg 214
>ref|NM_197655.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0015J15.29), mRNA Length = 1440 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 ctcgtcgtcgacgacgccga 243 |||||||||||||||||||| Sbjct: 66 ctcgtcgtcgacgacgccga 85
>gb|AC094571.8| Rattus norvegicus 20 BAC CH230-4L21 (Children's Hospital Oakland Research Institute) complete sequence Length = 230137 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 aacctctcttgtatttaaga 400 |||||||||||||||||||| Sbjct: 82673 aacctctcttgtatttaaga 82654
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 ccgtcagcggcgagaagaag 118 |||||||||||||||||||| Sbjct: 3593454 ccgtcagcggcgagaagaag 3593435
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 tcatcgccgtcagcggcgag 112 |||||||||||||||||||| Sbjct: 1323871 tcatcgccgtcagcggcgag 1323852
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 58 cgccggctggatcggctgggtcgg 81 ||||||||||||||||||| |||| Sbjct: 5065988 cgccggctggatcggctggttcgg 5065965
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 cgtcgtcgacgacgccgaca 245 |||||||||||||||||||| Sbjct: 1625227 cgtcgtcgacgacgccgaca 1625246
>emb|AL445928.8| Human DNA sequence from clone RP11-305E17 on chromosome 1, complete sequence Length = 173580 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 351 gtaggagctgataggatcatggagaaat 378 ||||||| |||| ||||||||||||||| Sbjct: 156348 gtaggaggtgattggatcatggagaaat 156375
>emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete genome; segment 3/16 Length = 346362 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 93 tcatcgccgtcagcggcgagaaga 116 ||||| |||||||||||||||||| Sbjct: 190147 tcatcaccgtcagcggcgagaaga 190124
>emb|BX640425.1| Bordetella parapertussis strain 12822, complete genome; segment 3/14 Length = 348257 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 93 tcatcgccgtcagcggcgagaaga 116 ||||| |||||||||||||||||| Sbjct: 103983 tcatcaccgtcagcggcgagaaga 103960
>emb|BX640411.1| Bordetella pertussis strain Tohama I, complete genome; segment 1/12 Length = 346359 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 93 tcatcgccgtcagcggcgagaaga 116 ||||| |||||||||||||||||| Sbjct: 179712 tcatcaccgtcagcggcgagaaga 179689
>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29 Length = 309050 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 cctcgtcgtcgacgacgccg 242 |||||||||||||||||||| Sbjct: 228112 cctcgtcgtcgacgacgccg 228093
>emb|AL662955.3|OSJN00158 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019J05, complete sequence Length = 185211 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 223 cctcgtcgtcgacgacgccg 242 |||||||||||||||||||| Sbjct: 74048 cctcgtcgtcgacgacgccg 74067
>gb|AC130610.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0478F09, complete sequence Length = 145070 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 217 cggcgacctcgtcgtcgacgacgccgac 244 ||||||| ||||||||||||||| |||| Sbjct: 102034 cggcgacgtcgtcgtcgacgacgacgac 102007
>gb|AC087698.5| Homo sapiens chromosome 8, clone RP11-25K19, complete sequence Length = 150750 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 398 agaaactgaacccaatcttg 417 |||||||||||||||||||| Sbjct: 10998 agaaactgaacccaatcttg 10979
>gb|AC105282.5| Homo sapiens chromosome 18, clone RP11-452F20, complete sequence Length = 167258 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 tgtatttaagaaactgaacc 409 |||||||||||||||||||| Sbjct: 17456 tgtatttaagaaactgaacc 17437
>gb|AE012083.1| Xanthomonas axonopodis pv. citri str. 306, section 461 of 469 of the complete genome Length = 10370 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 58 cgccggctggatcggctgggtcgg 81 ||||||||||||||||||| |||| Sbjct: 1228 cgccggctggatcggctggttcgg 1205
>gb|AC026758.8| Oryza sativa chromosome 10 BAC OSJNBa0015J15 genomic sequence, complete sequence Length = 144798 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 ctcgtcgtcgacgacgccga 243 |||||||||||||||||||| Sbjct: 137339 ctcgtcgtcgacgacgccga 137358
>gb|AC090152.4| Homo sapiens chromosome 8, clone RP11-554M1, complete sequence Length = 118755 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 agaaactgaacccaatcttg 417 |||||||||||||||||||| Sbjct: 14504 agaaactgaacccaatcttg 14523
>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome Length = 2628784 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 cgacgtcgagctcgccgcca 161 |||||||||||||||||||| Sbjct: 1823612 cgacgtcgagctcgccgcca 1823593
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 tcgtcgtcgacgacgccgac 244 |||||||||||||||||||| Sbjct: 3776422 tcgtcgtcgacgacgccgac 3776403
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 tcgccggctggatcggctgg 76 |||||||||||||||||||| Sbjct: 655777 tcgccggctggatcggctgg 655758
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 217 cggcgacctcgtcgtcgacgacgccgac 244 ||||||| ||||||||||||||| |||| Sbjct: 4734029 cggcgacgtcgtcgtcgacgacgacgac 4734002
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 cgccggctggatcggctggg 77 |||||||||||||||||||| Sbjct: 3034827 cgccggctggatcggctggg 3034808
>emb|AL513406.1|CNS07EFT Human DNA sequence chromosome 8 of Homo sapiens (human) Length = 204955 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 agaaactgaacccaatcttg 417 |||||||||||||||||||| Sbjct: 141225 agaaactgaacccaatcttg 141244
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 agctcatcaacggcgacctcgtcg 230 |||||||||||| ||||||||||| Sbjct: 1147974 agctcatcaacgacgacctcgtcg 1147951
>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome Length = 4096345 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 atggagaaatggaacctctc 388 |||||||||||||||||||| Sbjct: 418713 atggagaaatggaacctctc 418732
>gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0453H11, complete sequence Length = 187956 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 217 cggcgacctcgtcgtcgacgacgccgac 244 ||||||| ||||||||||||||| |||| Sbjct: 6437 cggcgacgtcgtcgtcgacgacgacgac 6410 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,992,943 Number of Sequences: 3902068 Number of extensions: 2992943 Number of successful extensions: 65026 Number of sequences better than 10.0: 78 Number of HSP's better than 10.0 without gapping: 64 Number of HSP's successfully gapped in prelim test: 15 Number of HSP's that attempted gapping in prelim test: 63144 Number of HSP's gapped (non-prelim): 1881 length of query: 450 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 428 effective length of database: 17,147,199,772 effective search space: 7339001502416 effective search space used: 7339001502416 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
