ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal30c17 |
|---|---|
| Clone Library Name | barley_pub |
>PAO_MAIZE (O64411) Polyamine oxidase precursor (EC 1.5.3.11)| Length = 500 Score = 118 bits (295), Expect = 1e-26 Identities = 55/84 (65%), Positives = 65/84 (77%) Frame = +1 Query: 4 DVESRRIEQQPDNVTMAEAVGVLRNMFPDRDVPDATDIYVPRWWSNRFFKGSYSNWPIGV 183 D ESRRIEQQ D T AE + VLR MFP +DVPDATDI VPRWWS+RF+KG++SNWP+GV Sbjct: 379 DEESRRIEQQSDEQTKAEIMQVLRKMFPGKDVPDATDILVPRWWSDRFYKGTFSNWPVGV 438 Query: 184 NRYEYDQLRVRPTSRPRHAGVYSA 255 NRYEYDQLR P R G +++ Sbjct: 439 NRYEYDQLRA-PVGRVYFTGEHTS 461 Score = 75.5 bits (184), Expect = 9e-14 Identities = 38/56 (67%), Positives = 46/56 (82%), Gaps = 1/56 (1%) Frame = +2 Query: 332 MQAPVGGRVYFTGEHTSEHYNGYVHGAYLAGIHSADILMNKALNNV-DFKVRPKYD 496 ++APVG RVYFTGEHTSEHYNGYVHGAYL+GI SA+IL+N A + + V+ KYD Sbjct: 446 LRAPVG-RVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQKKMCKYHVQGKYD 500
>LSD1_MOUSE (Q6ZQ88) Lysine-specific histone demethylase 1 (EC 1.-.-.-) (Amine| oxidase flavin-containing domain protein 2) (AOF2 protein) (BRAF35-HDAC complex protein BHC110) Length = 853 Score = 36.6 bits (83), Expect(2) = 8e-07 Identities = 20/74 (27%), Positives = 35/74 (47%) Frame = +1 Query: 22 IEQQPDNVTMAEAVGVLRNMFPDRDVPDATDIYVPRWWSNRFFKGSYSNWPIGVNRYEYD 201 +E D+V + + +L+ +F VP + V RW ++ + +GSYS G + +YD Sbjct: 716 MENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYD 775 Query: 202 QLRVRPTSRPRHAG 243 + T P G Sbjct: 776 LMAQPITPGPSIPG 789 Score = 35.4 bits (80), Expect(2) = 8e-07 Identities = 15/36 (41%), Positives = 23/36 (63%) Frame = +2 Query: 353 RVYFTGEHTSEHYNGYVHGAYLAGIHSADILMNKAL 460 R++F GEHT +Y VHGA L+G+ A + ++ L Sbjct: 796 RLFFAGEHTIRNYPATVHGALLSGLREAGRIADQFL 831
>LSD1_HUMAN (O60341) Lysine-specific histone demethylase 1 (EC 1.-.-.-) (Amine| oxidase flavin-containing domain protein 2) (BRAF35-HDAC complex protein BHC110) Length = 852 Score = 36.6 bits (83), Expect(2) = 8e-07 Identities = 20/74 (27%), Positives = 35/74 (47%) Frame = +1 Query: 22 IEQQPDNVTMAEAVGVLRNMFPDRDVPDATDIYVPRWWSNRFFKGSYSNWPIGVNRYEYD 201 +E D+V + + +L+ +F VP + V RW ++ + +GSYS G + +YD Sbjct: 715 MENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYD 774 Query: 202 QLRVRPTSRPRHAG 243 + T P G Sbjct: 775 LMAQPITPGPSIPG 788 Score = 35.4 bits (80), Expect(2) = 8e-07 Identities = 15/36 (41%), Positives = 23/36 (63%) Frame = +2 Query: 353 RVYFTGEHTSEHYNGYVHGAYLAGIHSADILMNKAL 460 R++F GEHT +Y VHGA L+G+ A + ++ L Sbjct: 795 RLFFAGEHTIRNYPATVHGALLSGLREAGRIADQFL 830
>LSDA_DROME (Q9VW97) Possible lysine-specific histone demethylase 1 (EC| 1.-.-.-) Length = 890 Score = 44.7 bits (104), Expect = 2e-04 Identities = 21/69 (30%), Positives = 38/69 (55%) Frame = +1 Query: 1 ADVESRRIEQQPDNVTMAEAVGVLRNMFPDRDVPDATDIYVPRWWSNRFFKGSYSNWPIG 180 A + + +E D++ + + VL+N+F + VP + V RW S+ + +GSYS +G Sbjct: 709 AGMAANLVESVTDDIIIGRCMSVLKNIFGNTSVPQPKETVVTRWRSDPWARGSYSYVSVG 768 Query: 181 VNRYEYDQL 207 + +YD L Sbjct: 769 SSGSDYDLL 777 Score = 38.1 bits (87), Expect = 0.016 Identities = 15/28 (53%), Positives = 20/28 (71%) Frame = +2 Query: 353 RVYFTGEHTSEHYNGYVHGAYLAGIHSA 436 R++F GEHT +Y VHGAYL+G+ A Sbjct: 794 RLFFAGEHTIRNYPATVHGAYLSGLREA 821
>CBP1_CANAL (P31225) Corticosteroid-binding protein| Length = 489 Score = 41.6 bits (96), Expect = 0.001 Identities = 16/37 (43%), Positives = 24/37 (64%) Frame = +2 Query: 356 VYFTGEHTSEHYNGYVHGAYLAGIHSADILMNKALNN 466 + F GEHT+ G VHGAY++GI++AD ++ N Sbjct: 444 IKFAGEHTTSEGTGCVHGAYMSGIYAADCILENIFRN 480
>AOFA_CANFA (P58027) Amine oxidase [flavin-containing] A (EC 1.4.3.4)| (Monoamine oxidase type A) (MAO-A) Length = 527 Score = 37.4 bits (85), Expect = 0.027 Identities = 21/53 (39%), Positives = 30/53 (56%) Frame = +2 Query: 350 GRVYFTGEHTSEHYNGYVHGAYLAGIHSADILMNKALNNVDFKVRPKYDDELK 508 GR+YF G T+ H++GY+ GA AG +A ++N AL V K + E K Sbjct: 428 GRIYFAGTETATHWSGYMEGAVEAGERTAREVLN-ALGRVAEKDLKTQEPESK 479
>AOFB_PIG (Q6PLK3) Amine oxidase [flavin-containing] B (EC 1.4.3.4)| (Monoamine oxidase type B) (MAO-B) Length = 519 Score = 35.8 bits (81), Expect = 0.078 Identities = 16/35 (45%), Positives = 24/35 (68%) Frame = +2 Query: 332 MQAPVGGRVYFTGEHTSEHYNGYVHGAYLAGIHSA 436 ++ PVG R+YF G T+ H++GY+ GA AG +A Sbjct: 413 LRQPVG-RIYFAGTETATHWSGYMEGAVEAGERAA 446
>AOFB_CAVPO (P58028) Amine oxidase [flavin-containing] B (EC 1.4.3.4)| (Monoamine oxidase type B) (MAO-B) Length = 519 Score = 35.8 bits (81), Expect = 0.078 Identities = 16/40 (40%), Positives = 27/40 (67%) Frame = +2 Query: 332 MQAPVGGRVYFTGEHTSEHYNGYVHGAYLAGIHSADILMN 451 ++ PVG R++F G T+ H++GY+ GA AG +A ++N Sbjct: 413 LRQPVG-RIFFAGTETATHWSGYMEGAVEAGERAAREVLN 451
>AOFB_CANFA (Q7YRB7) Amine oxidase [flavin-containing] B (EC 1.4.3.4)| (Monoamine oxidase type B) (MAO-B) Length = 519 Score = 35.8 bits (81), Expect = 0.078 Identities = 16/35 (45%), Positives = 24/35 (68%) Frame = +2 Query: 332 MQAPVGGRVYFTGEHTSEHYNGYVHGAYLAGIHSA 436 ++ PVG R+YF G T+ H++GY+ GA AG +A Sbjct: 413 LRQPVG-RIYFAGTETATHWSGYMEGAVEAGERAA 446
>AOFB_BOVIN (P56560) Amine oxidase [flavin-containing] B (EC 1.4.3.4)| (Monoamine oxidase type B) (MAO-B) Length = 519 Score = 35.8 bits (81), Expect = 0.078 Identities = 16/35 (45%), Positives = 24/35 (68%) Frame = +2 Query: 332 MQAPVGGRVYFTGEHTSEHYNGYVHGAYLAGIHSA 436 ++ PVG R+YF G T+ H++GY+ GA AG +A Sbjct: 413 LRQPVG-RIYFAGTETATHWSGYMEGAVEAGERAA 446
>LSD1_CAEEL (Q9XWP6) Probable lysine-specific histone demethylase 1 (EC| 1.-.-.-) (Suppressor of presenilin 5) (P110b homolog) Length = 770 Score = 35.0 bits (79), Expect = 0.13 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = +2 Query: 353 RVYFTGEHTSEHYNGYVHGAYLAGIHSADILMN 451 RVYF GEHT Y + GA+++G +A + N Sbjct: 646 RVYFAGEHTCSSYTSTIQGAWMSGARAAADISN 678
>AOFA_HORSE (Q5NU32) Amine oxidase [flavin-containing] A (EC 1.4.3.4)| (Monoamine oxidase type A) (MAO-A) Length = 527 Score = 34.3 bits (77), Expect = 0.23 Identities = 14/34 (41%), Positives = 22/34 (64%) Frame = +2 Query: 350 GRVYFTGEHTSEHYNGYVHGAYLAGIHSADILMN 451 GR+YF G T+ ++GY+ GA AG +A ++N Sbjct: 428 GRIYFAGTETATRWSGYMEGAVEAGERAAREILN 461
>AOFA_BOVIN (P21398) Amine oxidase [flavin-containing] A (EC 1.4.3.4)| (Monoamine oxidase type A) (MAO-A) Length = 527 Score = 33.9 bits (76), Expect = 0.29 Identities = 14/34 (41%), Positives = 22/34 (64%) Frame = +2 Query: 350 GRVYFTGEHTSEHYNGYVHGAYLAGIHSADILMN 451 GR+YF G T+ ++GY+ GA AG +A ++N Sbjct: 428 GRIYFAGTETATQWSGYMEGAVEAGERAAREVLN 461
>AOFA_RAT (P21396) Amine oxidase [flavin-containing] A (EC 1.4.3.4)| (Monoamine oxidase type A) (MAO-A) Length = 526 Score = 33.9 bits (76), Expect = 0.29 Identities = 14/34 (41%), Positives = 22/34 (64%) Frame = +2 Query: 350 GRVYFTGEHTSEHYNGYVHGAYLAGIHSADILMN 451 GR+YF G T+ ++GY+ GA AG +A ++N Sbjct: 428 GRIYFAGTETATQWSGYMEGAVEAGERAAREVLN 461
>AOFA_MOUSE (Q64133) Amine oxidase [flavin-containing] A (EC 1.4.3.4)| (Monoamine oxidase type A) (MAO-A) Length = 526 Score = 33.9 bits (76), Expect = 0.29 Identities = 14/34 (41%), Positives = 22/34 (64%) Frame = +2 Query: 350 GRVYFTGEHTSEHYNGYVHGAYLAGIHSADILMN 451 GR+YF G T+ ++GY+ GA AG +A ++N Sbjct: 428 GRIYFAGTETATQWSGYMEGAVEAGERAAREVLN 461
>AOFA_PIG (Q6Q2J0) Amine oxidase [flavin-containing] A (EC 1.4.3.4)| (Monoamine oxidase type A) (MAO-A) Length = 527 Score = 33.5 bits (75), Expect = 0.38 Identities = 17/43 (39%), Positives = 26/43 (60%) Frame = +2 Query: 350 GRVYFTGEHTSEHYNGYVHGAYLAGIHSADILMNKALNNVDFK 478 GR++F G T+ ++GY+ GA AG +A ++N AL V K Sbjct: 428 GRIFFAGTETATQWSGYMEGAVEAGERAAREILN-ALGKVSKK 469
>AOFB_RAT (P19643) Amine oxidase [flavin-containing] B (EC 1.4.3.4)| (Monoamine oxidase type B) (MAO-B) Length = 519 Score = 33.5 bits (75), Expect = 0.38 Identities = 14/35 (40%), Positives = 24/35 (68%) Frame = +2 Query: 332 MQAPVGGRVYFTGEHTSEHYNGYVHGAYLAGIHSA 436 ++ PVG +++F G T+ H++GY+ GA AG +A Sbjct: 413 LRQPVG-KIFFAGTETASHWSGYMEGAVEAGERAA 446
>AOFB_MOUSE (Q8BW75) Amine oxidase [flavin-containing] B (EC 1.4.3.4)| (Monoamine oxidase type B) (MAO-B) Length = 519 Score = 33.5 bits (75), Expect = 0.38 Identities = 14/35 (40%), Positives = 24/35 (68%) Frame = +2 Query: 332 MQAPVGGRVYFTGEHTSEHYNGYVHGAYLAGIHSA 436 ++ PVG +++F G T+ H++GY+ GA AG +A Sbjct: 413 LRQPVG-KIFFAGTETASHWSGYMEGAVEAGERAA 446
>AOFB_PONPY (Q5RE98) Amine oxidase [flavin-containing] B (EC 1.4.3.4)| (Monoamine oxidase type B) (MAO-B) Length = 519 Score = 33.1 bits (74), Expect = 0.50 Identities = 13/28 (46%), Positives = 19/28 (67%) Frame = +2 Query: 353 RVYFTGEHTSEHYNGYVHGAYLAGIHSA 436 R+YF G T+ H++GY+ GA AG +A Sbjct: 419 RIYFAGTETATHWSGYMEGAVEAGERAA 446
>AOFB_HUMAN (P27338) Amine oxidase [flavin-containing] B (EC 1.4.3.4)| (Monoamine oxidase type B) (MAO-B) Length = 519 Score = 33.1 bits (74), Expect = 0.50 Identities = 13/28 (46%), Positives = 19/28 (67%) Frame = +2 Query: 353 RVYFTGEHTSEHYNGYVHGAYLAGIHSA 436 R+YF G T+ H++GY+ GA AG +A Sbjct: 419 RIYFAGTETATHWSGYMEGAVEAGERAA 446
>AOF_ONCMY (P49253) Amine oxidase [flavin-containing] (EC 1.4.3.4) (Monoamine| oxidase) (MAO) Length = 522 Score = 32.7 bits (73), Expect = 0.66 Identities = 16/39 (41%), Positives = 25/39 (64%) Frame = +2 Query: 332 MQAPVGGRVYFTGEHTSEHYNGYVHGAYLAGIHSADILM 448 ++ PVG R+YF G T+ ++GY+ GA AG +A +M Sbjct: 416 LREPVG-RLYFAGTETATEWSGYMEGAVQAGERAAREVM 453
>AOFA_PONPY (Q5RE60) Amine oxidase [flavin-containing] A (EC 1.4.3.4)| (Monoamine oxidase type A) (MAO-A) Length = 527 Score = 32.0 bits (71), Expect = 1.1 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +2 Query: 350 GRVYFTGEHTSEHYNGYVHGAYLAGIHSADILMN 451 GR++F G T+ ++GY+ GA AG +A ++N Sbjct: 428 GRIFFAGTETATKWSGYMEGAVEAGERAAREVLN 461
>AOFA_HUMAN (P21397) Amine oxidase [flavin-containing] A (EC 1.4.3.4)| (Monoamine oxidase type A) (MAO-A) Length = 527 Score = 32.0 bits (71), Expect = 1.1 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +2 Query: 350 GRVYFTGEHTSEHYNGYVHGAYLAGIHSADILMN 451 GR++F G T+ ++GY+ GA AG +A ++N Sbjct: 428 GRIFFAGTETATKWSGYMEGAVEAGERAAREVLN 461
>SMOX_MOUSE (Q99K82) Spermine oxidase (EC 1.5.3.-) (Polyamine oxidase 1)| (PAO-1) (PAOh1) Length = 555 Score = 31.2 bits (69), Expect = 1.9 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%) Frame = +1 Query: 10 ESRRIEQQPDNVTMAE-AVGVLRNMFPDRDVPDATDIYVPRWWSNRFFKGSYSNWPIGVN 186 E + ++ D+ +AE +LR + ++P I W SN +F+GSYS +G + Sbjct: 431 EEALVMERCDDEAVAEICTEMLRQFTGNPNIPKPRRILRSAWGSNPYFRGSYSYTQVGSS 490 Query: 187 RYEYDQL 207 + ++L Sbjct: 491 GADVEKL 497
>SMOX_HUMAN (Q9NWM0) Spermine oxidase (EC 1.5.3.-) (Polyamine oxidase 1)| (PAO-1) (PAOh1) Length = 555 Score = 31.2 bits (69), Expect = 1.9 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%) Frame = +1 Query: 10 ESRRIEQQPDNVTMAE-AVGVLRNMFPDRDVPDATDIYVPRWWSNRFFKGSYSNWPIGVN 186 E + ++ D+ +AE +LR + ++P I W SN +F+GSYS +G + Sbjct: 431 EEALVMEKCDDEAVAEICTEMLRQFTGNPNIPKPRRILRSAWGSNPYFRGSYSYTQVGSS 490 Query: 187 RYEYDQL 207 + ++L Sbjct: 491 GADVEKL 497
>PAOX_MOUSE (Q8C0L6) Peroxisomal N1-acetyl-spermine/spermidine oxidase (EC| 1.5.3.11) (Polyamine oxidase) Length = 503 Score = 30.0 bits (66), Expect = 4.3 Identities = 17/60 (28%), Positives = 28/60 (46%) Frame = +1 Query: 1 ADVESRRIEQQPDNVTMAEAVGVLRNMFPDRDVPDATDIYVPRWWSNRFFKGSYSNWPIG 180 A +ES +E D + VLR + + +P A + +W S + +GSYS +G Sbjct: 376 AGLESEFMETLSDEEVLLSLTQVLRRVTGNPQLPAAKSVRRSQWHSAPYTRGSYSYVAVG 435
>YKT5_SCHPO (Q9C104) Hypothetical protein PB1E7.05 in chromosome I| Length = 1076 Score = 29.3 bits (64), Expect = 7.3 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%) Frame = -2 Query: 430 VYTCKISSVDIAI--VVLAGVLPGEVDPPANRRLH 332 V TC + D+ + ++LAG P EVD +N LH Sbjct: 338 VLTCCVGDYDLIVEELILAGFNPNEVDASSNTALH 372
>RCNA_SALTY (Q8ZM94) Nickel/cobalt efflux system rcnA| Length = 288 Score = 28.9 bits (63), Expect = 9.5 Identities = 13/31 (41%), Positives = 14/31 (45%) Frame = -2 Query: 367 GEVDPPANRRLHACDHDHDHDQSKTTSHIYD 275 GE A H DHDHDHD H +D Sbjct: 112 GEQQWLAGNHHHDHDHDHDHDHDHDHDHDHD 142 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,670,832 Number of Sequences: 219361 Number of extensions: 1210544 Number of successful extensions: 3507 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 3266 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3456 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4200495993 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
