ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal30b19 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ304793.1|HVU304793 Hordeum vulgare bpao2 gene for flavin containing polyamine oxidase, exons 1-8 Length = 4217 Score = 601 bits (303), Expect = e-169 Identities = 313/315 (99%), Gaps = 1/315 (0%) Strand = Plus / Plus Query: 2 aaaagttctggccgacgggccccgggnaagcagttcttcgtctacgccagctccaggaga 61 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 3352 aaaagttctggccgacgggccccggg-aagcagttcttcgtctacgccagctccaggaga 3410 Query: 62 ggctactacgggatgtggcagtcgttcgagaaggagtaccccggggccaacgtgctgctg 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3411 ggctactacgggatgtggcagtcgttcgagaaggagtaccccggggccaacgtgctgctg 3470 Query: 122 gtgacggtgacggacgtggagtcgcggcggatcgagcagcagcccgacaacgtgaccatg 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3471 gtgacggtgacggacgtggagtcgcggcggatcgagcagcagcccgacaacgtgaccatg 3530 Query: 182 gcggaggccgtgggcgtgctgcgcaacatgttccccgaccgggacgtccccgacgccacc 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3531 gcggaggccgtgggcgtgctgcgcaacatgttccccgaccgggacgtccccgacgccacc 3590 Query: 242 gatatctacgtgccgcgctggtggtccaaccgattcttcaagggctcctactccaactgg 301 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3591 gatatctacgtgctgcgctggtggtccaaccgattcttcaagggctcctactccaactgg 3650 Query: 302 cccatcggcgtcaac 316 ||||||||||||||| Sbjct: 3651 cccatcggcgtcaac 3665
>emb|AJ298132.1|HVU298132 Hordeum vulgare mRNA for polyamine oxidase (bpao2 gene) Length = 1700 Score = 601 bits (303), Expect = e-169 Identities = 313/315 (99%), Gaps = 1/315 (0%) Strand = Plus / Plus Query: 2 aaaagttctggccgacgggccccgggnaagcagttcttcgtctacgccagctccaggaga 61 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1087 aaaagttctggccgacgggccccggg-aagcagttcttcgtctacgccagctccaggaga 1145 Query: 62 ggctactacgggatgtggcagtcgttcgagaaggagtaccccggggccaacgtgctgctg 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1146 ggctactacgggatgtggcagtcgttcgagaaggagtaccccggggccaacgtgctgctg 1205 Query: 122 gtgacggtgacggacgtggagtcgcggcggatcgagcagcagcccgacaacgtgaccatg 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1206 gtgacggtgacggacgtggagtcgcggcggatcgagcagcagcccgacaacgtgaccatg 1265 Query: 182 gcggaggccgtgggcgtgctgcgcaacatgttccccgaccgggacgtccccgacgccacc 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1266 gcggaggccgtgggcgtgctgcgcaacatgttccccgaccgggacgtccccgacgccacc 1325 Query: 242 gatatctacgtgccgcgctggtggtccaaccgattcttcaagggctcctactccaactgg 301 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1326 gatatctacgtgctgcgctggtggtccaaccgattcttcaagggctcctactccaactgg 1385 Query: 302 cccatcggcgtcaac 316 ||||||||||||||| Sbjct: 1386 cccatcggcgtcaac 1400
>emb|AJ298131.1|HVU298131 Hordeum vulgare mRNA for polyamine oxidase (bpao1 gene) Length = 1583 Score = 143 bits (72), Expect = 4e-31 Identities = 231/284 (81%) Strand = Plus / Plus Query: 33 agttcttcgtctacgccagctccaggagaggctactacgggatgtggcagtcgttcgaga 92 |||||||| ||||||| ||| |||||||||||||||||| |||||||| ||| ||| Sbjct: 1064 agttcttcctctacgcgagcagcaggagaggctactacggagtgtggcaggagtttgagg 1123 Query: 93 aggagtaccccggggccaacgtgctgctggtgacggtgacggacgtggagtcgcggcgga 152 | ||||||| | |||||||| || ||||| || || || |||| |||||| |||||| Sbjct: 1124 cgcagtacccagacgccaacgttctcctggtcaccgtcaccgacgacgagtcgaggcgga 1183 Query: 153 tcgagcagcagcccgacaacgtgaccatggcggaggccgtgggcgtgctgcgcaacatgt 212 ||||||||||| | |||||| ||||| ||||||| ||||| |||||| | | ||||| Sbjct: 1184 tcgagcagcagtcggacaaccagaccaaggcggagatcgtggaggtgctgaggagcatgt 1243 Query: 213 tccccgaccgggacgtccccgacgccaccgatatctacgtgccgcgctggtggtccaacc 272 |||||| | ||||||||||||||| || || ||| |||||| || ||||||||| || Sbjct: 1244 tccccggcgaggacgtccccgacgcgacggacatcctcgtgccacggtggtggtccgaca 1303 Query: 273 gattcttcaagggctcctactccaactggcccatcggcgtcaac 316 | |||| || |||| ||| ||||||||||||||||||||||||| Sbjct: 1304 ggttctacaggggcaccttctccaactggcccatcggcgtcaac 1347
>ref|XM_450669.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1588 Score = 139 bits (70), Expect = 6e-30 Identities = 229/282 (81%) Strand = Plus / Plus Query: 33 agttcttcgtctacgccagctccaggagaggctactacgggatgtggcagtcgttcgaga 92 |||||||| ||||||| ||| ||||||||||||||||||| | |||||| ||| |||| Sbjct: 1037 agttcttcctctacgcgagcaccaggagaggctactacggagtctggcaggagtttgaga 1096 Query: 93 aggagtaccccggggccaacgtgctgctggtgacggtgacggacgtggagtcgcggcgga 152 || | ||||| | ||||| ||||| |||||||||||||| |||| ||||||| |||||| Sbjct: 1097 agcaatacccggatgccaatgtgctcctggtgacggtgaccgacgaggagtcgaggcgga 1156 Query: 153 tcgagcagcagcccgacaacgtgaccatggcggaggccgtgggcgtgctgcgcaacatgt 212 ||||||||||||| |||| | ||||| ||| ||| | ||| || || | | ||||| Sbjct: 1157 tcgagcagcagccggacagccagaccaaggcagagatcatggaggttgtgaggagcatgt 1216 Query: 213 tccccgaccgggacgtccccgacgccaccgatatctacgtgccgcgctggtggtccaacc 272 |||| ||| ||||||||||||||||||||| ||| ||| ||| | |||||||| || Sbjct: 1217 tccctgacgaggacgtccccgacgccaccgacatcctcgtcccgagatggtggtcggaca 1276 Query: 273 gattcttcaagggctcctactccaactggcccatcggcgtca 314 | |||||| | ||| || ||||||||||||||||||||||| Sbjct: 1277 ggttcttccaaggcagcttctccaactggcccatcggcgtca 1318
>dbj|AK069392.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014L10, full insert sequence Length = 1587 Score = 139 bits (70), Expect = 6e-30 Identities = 229/282 (81%) Strand = Plus / Plus Query: 33 agttcttcgtctacgccagctccaggagaggctactacgggatgtggcagtcgttcgaga 92 |||||||| ||||||| ||| ||||||||||||||||||| | |||||| ||| |||| Sbjct: 1036 agttcttcctctacgcgagcaccaggagaggctactacggagtctggcaggagtttgaga 1095 Query: 93 aggagtaccccggggccaacgtgctgctggtgacggtgacggacgtggagtcgcggcgga 152 || | ||||| | ||||| ||||| |||||||||||||| |||| ||||||| |||||| Sbjct: 1096 agcaatacccggatgccaatgtgctcctggtgacggtgaccgacgaggagtcgaggcgga 1155 Query: 153 tcgagcagcagcccgacaacgtgaccatggcggaggccgtgggcgtgctgcgcaacatgt 212 ||||||||||||| |||| | ||||| ||| ||| | ||| || || | | ||||| Sbjct: 1156 tcgagcagcagccggacagccagaccaaggcagagatcatggaggttgtgaggagcatgt 1215 Query: 213 tccccgaccgggacgtccccgacgccaccgatatctacgtgccgcgctggtggtccaacc 272 |||| ||| ||||||||||||||||||||| ||| ||| ||| | |||||||| || Sbjct: 1216 tccctgacgaggacgtccccgacgccaccgacatcctcgtcccgagatggtggtcggaca 1275 Query: 273 gattcttcaagggctcctactccaactggcccatcggcgtca 314 | |||||| | ||| || ||||||||||||||||||||||| Sbjct: 1276 ggttcttccaaggcagcttctccaactggcccatcggcgtca 1317
>emb|AJ002204.1|ZMJ002204 Zea mays mRNA for flavin containing polyamine oxidase (PAO) Length = 1750 Score = 119 bits (60), Expect = 6e-24 Identities = 228/284 (80%) Strand = Plus / Plus Query: 33 agttcttcgtctacgccagctccaggagaggctactacgggatgtggcagtcgttcgaga 92 |||||||| ||||||||||| ||||||||| |||||||| |||||||| |||||||| Sbjct: 1103 agttcttcctctacgccagcagcaggagaggttactacggagtgtggcaggagttcgaga 1162 Query: 93 aggagtaccccggggccaacgtgctgctggtgacggtgacggacgtggagtcgcggcgga 152 || ||||||| | ||||| || || ||||| || ||||| |||| ||||||| |||| | Sbjct: 1163 agcagtaccctgacgccaatgtcctcctggtcaccgtgaccgacgaggagtcgaggcgca 1222 Query: 153 tcgagcagcagcccgacaacgtgaccatggcggaggccgtgggcgtgctgcgcaacatgt 212 ||||||||||| | ||| | ||||| ||||||| | || |||||||| || |||| Sbjct: 1223 tcgagcagcagtcggacgagcagaccaaggcggagatcatgcaggtgctgcggaagatgt 1282 Query: 213 tccccgaccgggacgtccccgacgccaccgatatctacgtgccgcgctggtggtccaacc 272 |||||| | ||||||||| ||||||||||| ||| || ||| | ||||||||| || Sbjct: 1283 tccccggcaaggacgtcccggacgccaccgacatccttgtcccgaggtggtggtccgaca 1342 Query: 273 gattcttcaagggctcctactccaactggcccatcggcgtcaac 316 | |||| ||||||| ||| |||||||||||| | ||||||||| Sbjct: 1343 ggttctacaagggcaccttctccaactggccagttggcgtcaac 1386
>gb|AY107888.1| Zea mays PCO061908 mRNA sequence Length = 1895 Score = 119 bits (60), Expect = 6e-24 Identities = 228/284 (80%) Strand = Plus / Plus Query: 33 agttcttcgtctacgccagctccaggagaggctactacgggatgtggcagtcgttcgaga 92 |||||||| ||||||||||| ||||||||| |||||||| |||||||| |||||||| Sbjct: 1109 agttcttcctctacgccagcagcaggagaggttactacggagtgtggcaggagttcgaga 1168 Query: 93 aggagtaccccggggccaacgtgctgctggtgacggtgacggacgtggagtcgcggcgga 152 || ||||||| | ||||| || || ||||| || ||||| |||| ||||||| |||| | Sbjct: 1169 agcagtaccctgacgccaatgtcctcctggtcaccgtgaccgacgaggagtcgaggcgca 1228 Query: 153 tcgagcagcagcccgacaacgtgaccatggcggaggccgtgggcgtgctgcgcaacatgt 212 ||||||||||| | ||| | ||||| ||||||| | || |||||||| || |||| Sbjct: 1229 tcgagcagcagtcggacgagcagaccaaggcggagatcatgcaggtgctgcggaagatgt 1288 Query: 213 tccccgaccgggacgtccccgacgccaccgatatctacgtgccgcgctggtggtccaacc 272 |||||| | ||||||||| ||||||||||| ||| || ||| | ||||||||| || Sbjct: 1289 tccccggcaaggacgtcccggacgccaccgacatccttgtcccgaggtggtggtccgaca 1348 Query: 273 gattcttcaagggctcctactccaactggcccatcggcgtcaac 316 | |||| ||||||| ||| |||||||||||| | ||||||||| Sbjct: 1349 ggttctacaagggcaccttctccaactggccagttggcgtcaac 1392
>ref|XM_450667.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1473 Score = 115 bits (58), Expect = 9e-23 Identities = 118/138 (85%) Strand = Plus / Plus Query: 33 agttcttcgtctacgccagctccaggagaggctactacgggatgtggcagtcgttcgaga 92 |||||||| ||||||| ||| ||||||||||||||||||| | |||||| ||| |||| Sbjct: 1004 agttcttcctctacgcgagcaccaggagaggctactacggagtctggcaggagtttgaga 1063 Query: 93 aggagtaccccggggccaacgtgctgctggtgacggtgacggacgtggagtcgcggcgga 152 || | ||||| | ||||| ||||| |||||||||||||| |||| ||||||| |||||| Sbjct: 1064 agcaatacccggatgccaatgtgctcctggtgacggtgaccgacgaggagtcgaggcgga 1123 Query: 153 tcgagcagcagcccgaca 170 ||||||||||||| |||| Sbjct: 1124 tcgagcagcagccggaca 1141 Score = 69.9 bits (35), Expect = 5e-09 Identities = 89/107 (83%) Strand = Plus / Plus Query: 208 catgttccccgaccgggacgtccccgacgccaccgatatctacgtgccgcgctggtggtc 267 ||||||||| ||| ||| ||||||||||||||||| ||| ||| ||| | |||||||| Sbjct: 1179 catgttccctgacgaggatgtccccgacgccaccgacatcctcgtcccgagatggtggtc 1238 Query: 268 caaccgattcttcaagggctcctactccaactggcccatcggcgtca 314 | || | |||||| |||| || ||||||||||||||||||||||| Sbjct: 1239 cgacaggttcttccggggcagcttctccaactggcccatcggcgtca 1285
>ref|XM_470573.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1044 Score = 111 bits (56), Expect = 1e-21 Identities = 227/284 (79%) Strand = Plus / Plus Query: 33 agttcttcgtctacgccagctccaggagaggctactacgggatgtggcagtcgttcgaga 92 |||||||| ||||||| ||| |||||||||| ||||| || || |||||| |||||||| Sbjct: 575 agttcttcctctacgcgagcaccaggagaggttactatggaatatggcaggagttcgaga 634 Query: 93 aggagtaccccggggccaacgtgctgctggtgacggtgacggacgtggagtcgcggcgga 152 | | ||||| | |||| || || || || ||||| || ||| ||||||| |||||| Sbjct: 635 aacaatacccagattccaatgttcttcttgtcacggtcaccgacaaggagtcgaggcgga 694 Query: 153 tcgagcagcagcccgacaacgtgaccatggcggaggccgtgggcgtgctgcgcaacatgt 212 ||||||||||| | |||||| ||||| ||| ||| | ||| |||||| | ||||||| Sbjct: 695 tcgagcagcagtcggacaaccagaccaaggcagagatcatggaggtgctgaggaacatgt 754 Query: 213 tccccgaccgggacgtccccgacgccaccgatatctacgtgccgcgctggtggtccaacc 272 |||| |||| ||||||||| |||||||| || ||| ||| || | |||||||| ||| Sbjct: 755 tccctgaccaggacgtccctgacgccactgacatcctcgtcccaagatggtggtcaaaca 814 Query: 273 gattcttcaagggctcctactccaactggcccatcggcgtcaac 316 | |||| ||||||| ||| ||||||||||||||| ||||||||| Sbjct: 815 ggttctacaagggcaccttctccaactggcccattggcgtcaac 858
>emb|AJ304792.1|HVU304792 Hordeum vulgare bpao1 gene for flavin containing polyamine oxidase, exons 1-9 Length = 2942 Score = 107 bits (54), Expect = 2e-20 Identities = 171/210 (81%) Strand = Plus / Plus Query: 107 gccaacgtgctgctggtgacggtgacggacgtggagtcgcggcggatcgagcagcagccc 166 |||||||| || ||||| || || || |||| |||||| ||||||||||||||||| | Sbjct: 2260 gccaacgttctcctggtcaccgtcaccgacgacgagtcgaggcggatcgagcagcagtcg 2319 Query: 167 gacaacgtgaccatggcggaggccgtgggcgtgctgcgcaacatgttccccgaccgggac 226 |||||| ||||| ||||||| ||||| |||||| | | ||||||||||| | |||| Sbjct: 2320 gacaaccagaccaaggcggagatcgtggaggtgctgaggagcatgttccccggcgaggac 2379 Query: 227 gtccccgacgccaccgatatctacgtgccgcgctggtggtccaaccgattcttcaagggc 286 ||||||||||| || || ||| ||||| || ||||||||| || | |||| || |||| Sbjct: 2380 gtccccgacgcgacggacatcctagtgccacggtggtggtccgacaggttctacaggggc 2439 Query: 287 tcctactccaactggcccatcggcgtcaac 316 ||| ||||||||||||||||||||||||| Sbjct: 2440 accttctccaactggcccatcggcgtcaac 2469 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Plus Query: 33 agttcttcgtctacgccagctccaggagaggctactacgggatgtggcag 82 |||||||| ||||||| ||| |||||||||||||||||| |||||||| Sbjct: 2102 agttcttcctctacgcgagcagcaggagaggctactacggagtgtggcag 2151
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 103 bits (52), Expect = 3e-19 Identities = 169/208 (81%) Strand = Plus / Minus Query: 107 gccaacgtgctgctggtgacggtgacggacgtggagtcgcggcggatcgagcagcagccc 166 ||||| ||||| |||||||||||||| |||| ||||||| ||||||||||||||||||| Sbjct: 12113606 gccaatgtgctcctggtgacggtgaccgacgaggagtcgaggcggatcgagcagcagccg 12113547 Query: 167 gacaacgtgaccatggcggaggccgtgggcgtgctgcgcaacatgttccccgaccgggac 226 |||| | ||||| ||| ||| | ||| || || | | ||||||||| ||| |||| Sbjct: 12113546 gacagccagaccaaggcagagatcatggaggttgtgaggagcatgttccctgacgaggac 12113487 Query: 227 gtccccgacgccaccgatatctacgtgccgcgctggtggtccaaccgattcttcaagggc 286 ||||||||||||||||| ||| ||| ||| | |||||||| || | |||||| | ||| Sbjct: 12113486 gtccccgacgccaccgacatcctcgtcccgagatggtggtcggacaggttcttccaaggc 12113427 Query: 287 tcctactccaactggcccatcggcgtca 314 || ||||||||||||||||||||||| Sbjct: 12113426 agcttctccaactggcccatcggcgtca 12113399 Score = 79.8 bits (40), Expect = 5e-12 Identities = 58/64 (90%) Strand = Plus / Minus Query: 107 gccaacgtgctgctggtgacggtgacggacgtggagtcgcggcggatcgagcagcagccc 166 ||||| ||||| |||||||||||||| |||| ||||||| ||||||||||||||||||| Sbjct: 12093212 gccaatgtgctcctggtgacggtgaccgacgaggagtcgaggcggatcgagcagcagccg 12093153 Query: 167 gaca 170 |||| Sbjct: 12093152 gaca 12093149 Score = 69.9 bits (35), Expect = 5e-09 Identities = 89/107 (83%) Strand = Plus / Minus Query: 208 catgttccccgaccgggacgtccccgacgccaccgatatctacgtgccgcgctggtggtc 267 ||||||||| ||| ||| ||||||||||||||||| ||| ||| ||| | |||||||| Sbjct: 12093111 catgttccctgacgaggatgtccccgacgccaccgacatcctcgtcccgagatggtggtc 12093052 Query: 268 caaccgattcttcaagggctcctactccaactggcccatcggcgtca 314 | || | |||||| |||| || ||||||||||||||||||||||| Sbjct: 12093051 cgacaggttcttccggggcagcttctccaactggcccatcggcgtca 12093005 Score = 56.0 bits (28), Expect = 7e-05 Identities = 37/40 (92%) Strand = Plus / Minus Query: 33 agttcttcgtctacgccagctccaggagaggctactacgg 72 |||||||| ||||||| ||| ||||||||||||||||||| Sbjct: 12113757 agttcttcctctacgcgagcaccaggagaggctactacgg 12113718 Score = 56.0 bits (28), Expect = 7e-05 Identities = 37/40 (92%) Strand = Plus / Minus Query: 33 agttcttcgtctacgccagctccaggagaggctactacgg 72 |||||||| ||||||| ||| ||||||||||||||||||| Sbjct: 12093363 agttcttcctctacgcgagcaccaggagaggctactacgg 12093324
>dbj|AP005580.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1759_F09 Length = 149501 Score = 103 bits (52), Expect = 3e-19 Identities = 169/208 (81%) Strand = Plus / Minus Query: 107 gccaacgtgctgctggtgacggtgacggacgtggagtcgcggcggatcgagcagcagccc 166 ||||| ||||| |||||||||||||| |||| ||||||| ||||||||||||||||||| Sbjct: 25065 gccaatgtgctcctggtgacggtgaccgacgaggagtcgaggcggatcgagcagcagccg 25006 Query: 167 gacaacgtgaccatggcggaggccgtgggcgtgctgcgcaacatgttccccgaccgggac 226 |||| | ||||| ||| ||| | ||| || || | | ||||||||| ||| |||| Sbjct: 25005 gacagccagaccaaggcagagatcatggaggttgtgaggagcatgttccctgacgaggac 24946 Query: 227 gtccccgacgccaccgatatctacgtgccgcgctggtggtccaaccgattcttcaagggc 286 ||||||||||||||||| ||| ||| ||| | |||||||| || | |||||| | ||| Sbjct: 24945 gtccccgacgccaccgacatcctcgtcccgagatggtggtcggacaggttcttccaaggc 24886 Query: 287 tcctactccaactggcccatcggcgtca 314 || ||||||||||||||||||||||| Sbjct: 24885 agcttctccaactggcccatcggcgtca 24858 Score = 79.8 bits (40), Expect = 5e-12 Identities = 58/64 (90%) Strand = Plus / Minus Query: 107 gccaacgtgctgctggtgacggtgacggacgtggagtcgcggcggatcgagcagcagccc 166 ||||| ||||| |||||||||||||| |||| ||||||| ||||||||||||||||||| Sbjct: 4671 gccaatgtgctcctggtgacggtgaccgacgaggagtcgaggcggatcgagcagcagccg 4612 Query: 167 gaca 170 |||| Sbjct: 4611 gaca 4608 Score = 69.9 bits (35), Expect = 5e-09 Identities = 89/107 (83%) Strand = Plus / Minus Query: 208 catgttccccgaccgggacgtccccgacgccaccgatatctacgtgccgcgctggtggtc 267 ||||||||| ||| ||| ||||||||||||||||| ||| ||| ||| | |||||||| Sbjct: 4570 catgttccctgacgaggatgtccccgacgccaccgacatcctcgtcccgagatggtggtc 4511 Query: 268 caaccgattcttcaagggctcctactccaactggcccatcggcgtca 314 | || | |||||| |||| || ||||||||||||||||||||||| Sbjct: 4510 cgacaggttcttccggggcagcttctccaactggcccatcggcgtca 4464 Score = 56.0 bits (28), Expect = 7e-05 Identities = 37/40 (92%) Strand = Plus / Minus Query: 33 agttcttcgtctacgccagctccaggagaggctactacgg 72 |||||||| ||||||| ||| ||||||||||||||||||| Sbjct: 25216 agttcttcctctacgcgagcaccaggagaggctactacgg 25177 Score = 56.0 bits (28), Expect = 7e-05 Identities = 37/40 (92%) Strand = Plus / Minus Query: 33 agttcttcgtctacgccagctccaggagaggctactacgg 72 |||||||| ||||||| ||| ||||||||||||||||||| Sbjct: 4822 agttcttcctctacgcgagcaccaggagaggctactacgg 4783
>dbj|AP005525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0564H06 Length = 146823 Score = 103 bits (52), Expect = 3e-19 Identities = 169/208 (81%) Strand = Plus / Minus Query: 107 gccaacgtgctgctggtgacggtgacggacgtggagtcgcggcggatcgagcagcagccc 166 ||||| ||||| |||||||||||||| |||| ||||||| ||||||||||||||||||| Sbjct: 47985 gccaatgtgctcctggtgacggtgaccgacgaggagtcgaggcggatcgagcagcagccg 47926 Query: 167 gacaacgtgaccatggcggaggccgtgggcgtgctgcgcaacatgttccccgaccgggac 226 |||| | ||||| ||| ||| | ||| || || | | ||||||||| ||| |||| Sbjct: 47925 gacagccagaccaaggcagagatcatggaggttgtgaggagcatgttccctgacgaggac 47866 Query: 227 gtccccgacgccaccgatatctacgtgccgcgctggtggtccaaccgattcttcaagggc 286 ||||||||||||||||| ||| ||| ||| | |||||||| || | |||||| | ||| Sbjct: 47865 gtccccgacgccaccgacatcctcgtcccgagatggtggtcggacaggttcttccaaggc 47806 Query: 287 tcctactccaactggcccatcggcgtca 314 || ||||||||||||||||||||||| Sbjct: 47805 agcttctccaactggcccatcggcgtca 47778 Score = 79.8 bits (40), Expect = 5e-12 Identities = 58/64 (90%) Strand = Plus / Minus Query: 107 gccaacgtgctgctggtgacggtgacggacgtggagtcgcggcggatcgagcagcagccc 166 ||||| ||||| |||||||||||||| |||| ||||||| ||||||||||||||||||| Sbjct: 27591 gccaatgtgctcctggtgacggtgaccgacgaggagtcgaggcggatcgagcagcagccg 27532 Query: 167 gaca 170 |||| Sbjct: 27531 gaca 27528 Score = 69.9 bits (35), Expect = 5e-09 Identities = 89/107 (83%) Strand = Plus / Minus Query: 208 catgttccccgaccgggacgtccccgacgccaccgatatctacgtgccgcgctggtggtc 267 ||||||||| ||| ||| ||||||||||||||||| ||| ||| ||| | |||||||| Sbjct: 27490 catgttccctgacgaggatgtccccgacgccaccgacatcctcgtcccgagatggtggtc 27431 Query: 268 caaccgattcttcaagggctcctactccaactggcccatcggcgtca 314 | || | |||||| |||| || ||||||||||||||||||||||| Sbjct: 27430 cgacaggttcttccggggcagcttctccaactggcccatcggcgtca 27384 Score = 56.0 bits (28), Expect = 7e-05 Identities = 37/40 (92%) Strand = Plus / Minus Query: 33 agttcttcgtctacgccagctccaggagaggctactacgg 72 |||||||| ||||||| ||| ||||||||||||||||||| Sbjct: 48136 agttcttcctctacgcgagcaccaggagaggctactacgg 48097 Score = 56.0 bits (28), Expect = 7e-05 Identities = 37/40 (92%) Strand = Plus / Minus Query: 33 agttcttcgtctacgccagctccaggagaggctactacgg 72 |||||||| ||||||| ||| ||||||||||||||||||| Sbjct: 27742 agttcttcctctacgcgagcaccaggagaggctactacgg 27703
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 99.6 bits (50), Expect = 5e-18 Identities = 146/178 (82%) Strand = Plus / Plus Query: 139 ggagtcgcggcggatcgagcagcagcccgacaacgtgaccatggcggaggccgtgggcgt 198 ||||||| ||||||||||||||||| | |||||| ||||| ||| ||| | ||| || Sbjct: 4847852 ggagtcgaggcggatcgagcagcagtcggacaaccagaccaaggcagagatcatggaggt 4847911 Query: 199 gctgcgcaacatgttccccgaccgggacgtccccgacgccaccgatatctacgtgccgcg 258 |||| | ||||||||||| |||| ||||||||| |||||||| || ||| ||| || | Sbjct: 4847912 gctgaggaacatgttccctgaccaggacgtccctgacgccactgacatcctcgtcccaag 4847971 Query: 259 ctggtggtccaaccgattcttcaagggctcctactccaactggcccatcggcgtcaac 316 |||||||| ||| | |||| ||||||| ||| ||||||||||||||| ||||||||| Sbjct: 4847972 atggtggtcaaacaggttctacaagggcaccttctccaactggcccattggcgtcaac 4848029
>gb|AC105731.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0064E16, complete sequence Length = 159092 Score = 99.6 bits (50), Expect = 5e-18 Identities = 146/178 (82%) Strand = Plus / Minus Query: 139 ggagtcgcggcggatcgagcagcagcccgacaacgtgaccatggcggaggccgtgggcgt 198 ||||||| ||||||||||||||||| | |||||| ||||| ||| ||| | ||| || Sbjct: 147695 ggagtcgaggcggatcgagcagcagtcggacaaccagaccaaggcagagatcatggaggt 147636 Query: 199 gctgcgcaacatgttccccgaccgggacgtccccgacgccaccgatatctacgtgccgcg 258 |||| | ||||||||||| |||| ||||||||| |||||||| || ||| ||| || | Sbjct: 147635 gctgaggaacatgttccctgaccaggacgtccctgacgccactgacatcctcgtcccaag 147576 Query: 259 ctggtggtccaaccgattcttcaagggctcctactccaactggcccatcggcgtcaac 316 |||||||| ||| | |||| ||||||| ||| ||||||||||||||| ||||||||| Sbjct: 147575 atggtggtcaaacaggttctacaagggcaccttctccaactggcccattggcgtcaac 147518
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 99.6 bits (50), Expect = 5e-18 Identities = 146/178 (82%) Strand = Plus / Plus Query: 139 ggagtcgcggcggatcgagcagcagcccgacaacgtgaccatggcggaggccgtgggcgt 198 ||||||| ||||||||||||||||| | |||||| ||||| ||| ||| | ||| || Sbjct: 4847067 ggagtcgaggcggatcgagcagcagtcggacaaccagaccaaggcagagatcatggaggt 4847126 Query: 199 gctgcgcaacatgttccccgaccgggacgtccccgacgccaccgatatctacgtgccgcg 258 |||| | ||||||||||| |||| ||||||||| |||||||| || ||| ||| || | Sbjct: 4847127 gctgaggaacatgttccctgaccaggacgtccctgacgccactgacatcctcgtcccaag 4847186 Query: 259 ctggtggtccaaccgattcttcaagggctcctactccaactggcccatcggcgtcaac 316 |||||||| ||| | |||| ||||||| ||| ||||||||||||||| ||||||||| Sbjct: 4847187 atggtggtcaaacaggttctacaagggcaccttctccaactggcccattggcgtcaac 4847244
>emb|AJ251568.1|ZMA251568 Zea mays PAO gene for flavin containing polyamine oxidase, exons 1-8 Length = 4096 Score = 79.8 bits (40), Expect = 5e-12 Identities = 184/232 (79%) Strand = Plus / Plus Query: 85 gttcgagaaggagtaccccggggccaacgtgctgctggtgacggtgacggacgtggagtc 144 |||||||||| ||||||| | ||||| || || ||||| || ||||| |||| |||||| Sbjct: 3561 gttcgagaagcagtaccctgacgccaatgtcctcctggtcaccgtgaccgacgaggagtc 3620 Query: 145 gcggcggatcgagcagcagcccgacaacgtgaccatggcggaggccgtgggcgtgctgcg 204 | |||| |||||||||||| | ||| | ||||| ||||||| | || |||||||| Sbjct: 3621 gaggcgcatcgagcagcagtcggacgagcagaccaaggcggagatcatgcaggtgctgcg 3680 Query: 205 caacatgttccccgaccgggacgtccccgacgccaccgatatctacgtgccgcgctggtg 264 || |||||||||| | ||||||||| ||||||||||| ||| || ||| | ||||| Sbjct: 3681 gaagatgttccccggcaaggacgtcccggacgccaccgacatccttgtcccgaggtggtg 3740 Query: 265 gtccaaccgattcttcaagggctcctactccaactggcccatcggcgtcaac 316 |||| || | |||| ||||||| ||| |||||||||||| | ||||||||| Sbjct: 3741 gtccgacaggttctacaagggcaccttctccaactggccagttggcgtcaac 3792 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Plus Query: 33 agttcttcgtctacgccagctccaggagaggctactacgggatgtggcag 82 |||||||| ||||||||||| ||||||||| |||||||| |||||||| Sbjct: 3422 agttcttcctctacgccagcagcaggagaggttactacggagtgtggcag 3471
>emb|AJ251018.1|ZMA251018 Zea mays pao gene for polyamine oxidase, exons 1-8, clone pMPAO2 Length = 4344 Score = 79.8 bits (40), Expect = 5e-12 Identities = 184/232 (79%) Strand = Plus / Plus Query: 85 gttcgagaaggagtaccccggggccaacgtgctgctggtgacggtgacggacgtggagtc 144 |||||||||| ||||||| | ||||| || || ||||| || ||||| |||| |||||| Sbjct: 3808 gttcgagaagcagtaccctgacgccaatgtcctcctggtcaccgtgaccgacgaggagtc 3867 Query: 145 gcggcggatcgagcagcagcccgacaacgtgaccatggcggaggccgtgggcgtgctgcg 204 | |||| |||||||||||| | ||| | ||||| ||||||| | || |||||||| Sbjct: 3868 gaggcgcatcgagcagcagtcggacgagcagaccaaggcggagatcatgcaggtgctgcg 3927 Query: 205 caacatgttccccgaccgggacgtccccgacgccaccgatatctacgtgccgcgctggtg 264 || |||||||||| | ||||||||| ||||||||||| ||| || ||| | ||||| Sbjct: 3928 gaagatgttccccggcaaggacgtcccggacgccaccgacatccttgtcccgagatggtg 3987 Query: 265 gtccaaccgattcttcaagggctcctactccaactggcccatcggcgtcaac 316 |||| || | |||| ||||||| ||| |||||||||||| | ||||||||| Sbjct: 3988 gtccgacaggttctacaagggcaccttctccaactggccagttggcgtcaac 4039 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Plus Query: 33 agttcttcgtctacgccagctccaggagaggctactacgggatgtggcag 82 |||||||| ||||||||||| ||||||||| |||||||| |||||||| Sbjct: 3651 agttcttcctctacgccagcagcaggagaggttactacggagtgtggcag 3700
>emb|AJ251019.1|ZMA251019 Zea mays pao gene for polyamine oxidase, exons 1-8, clone pMPAO3 Length = 3384 Score = 71.9 bits (36), Expect = 1e-09 Identities = 183/232 (78%) Strand = Plus / Plus Query: 85 gttcgagaaggagtaccccggggccaacgtgctgctggtgacggtgacggacgtggagtc 144 |||||||||| ||||||| | ||||| || || ||||| || ||||| |||| |||||| Sbjct: 2849 gttcgagaagcagtaccctgacgccaatgtcctcctggtcaccgtgaccgacgaggagtc 2908 Query: 145 gcggcggatcgagcagcagcccgacaacgtgaccatggcggaggccgtgggcgtgctgcg 204 | |||| |||||||||||| | ||| | ||||| ||||||| | || |||||||| Sbjct: 2909 gaggcgcatcgagcagcagtcggacgagcagaccaaggcggagatcatgcaggtgctgcg 2968 Query: 205 caacatgttccccgaccgggacgtccccgacgccaccgatatctacgtgccgcgctggtg 264 || |||||||||| | ||||||||| ||||||||||| ||| || ||| | ||||| Sbjct: 2969 gaagatgttccccggcaaggacgtcccagacgccaccgacatccttgtcccgaggtggtg 3028 Query: 265 gtccaaccgattcttcaagggctcctactccaactggcccatcggcgtcaac 316 |||| || | |||| ||||||| ||| ||| |||||||| | ||||||||| Sbjct: 3029 gtccgacaggttctacaagggcaccttctctaactggccagttggcgtcaac 3080 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Plus Query: 33 agttcttcgtctacgccagctccaggagaggctactacgggatgtggcag 82 |||||||| ||||||||||| ||||||||| |||||||| |||||||| Sbjct: 2696 agttcttcctctacgccagcagcaggagaggttactacggagtgtggcag 2745
>emb|AL928639.5| Mouse DNA sequence from clone RP23-446O17 on chromosome 2, complete sequence Length = 177843 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 283 gggctcctactccaactggcc 303 ||||||||||||||||||||| Sbjct: 67356 gggctcctactccaactggcc 67336 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,627,027 Number of Sequences: 3902068 Number of extensions: 1627027 Number of successful extensions: 32464 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 32348 Number of HSP's gapped (non-prelim): 96 length of query: 316 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 294 effective length of database: 17,147,199,772 effective search space: 5041276732968 effective search space used: 5041276732968 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
