Clone Information

BLAST Search Result

Clone Name	baal30a24
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	PSBO_WHEAT (P27665) Oxygen-evolving enhancer protein 1, chloropl...	334	5e-92
2	PSBO_TOBAC (Q40459) Oxygen-evolving enhancer protein 1, chloropl...	321	1e-87
3	PSBO_FRIAG (O49079) Oxygen-evolving enhancer protein 1, chloropl...	319	3e-87
4	PSBO_SOLTU (P26320) Oxygen-evolving enhancer protein 1, chloropl...	319	3e-87
5	PSBO_PEA (P14226) Oxygen-evolving enhancer protein 1, chloroplas...	319	4e-87
6	PSBO_LYCES (P23322) Oxygen-evolving enhancer protein 1, chloropl...	317	2e-86
7	PSBO2_ARATH (Q9S841) Oxygen-evolving enhancer protein 1-2, chlor...	311	1e-84
8	PSBO1_ARATH (P23321) Oxygen-evolving enhancer protein 1-1, chlor...	304	1e-82
9	PSBO_SPIOL (P12359) Oxygen-evolving enhancer protein 1, chloropl...	303	2e-82
10	PSBO_VOLCA (Q9SBN6) Oxygen-evolving enhancer protein 1, chloropl...	204	1e-52
11	PSBO_CHLRE (P12853) Oxygen-evolving enhancer protein 1, chloropl...	199	4e-51
12	PSBO_EUGGR (P46483) Oxygen-evolving enhancer protein 1, chloropl...	190	3e-48
13	PSBO_ANASP (P13907) Photosystem II manganese-stabilizing polypep...	150	3e-36
14	PSBO_SYNEN (P0A432) Photosystem II manganese-stabilizing polypep...	147	2e-35
15	PSBO_SYNEL (P0A431) Photosystem II manganese-stabilizing polypep...	147	2e-35
16	PSBO_SYNY3 (P10549) Photosystem II manganese-stabilizing polypep...	134	2e-31
17	PSBO_CYAA5 (Q9R6W6) Photosystem II manganese-stabilizing polypep...	130	2e-30
18	PSBO_SYNP7 (P11472) Photosystem II manganese-stabilizing polypep...	129	5e-30
19	PSBO_BRARA (P83504) Oxygen-evolving enhancer protein 1, chloropl...	67	4e-11
20	MYO2_CAEEL (P12845) Myosin-2 (Myosin heavy chain C) (MHC C)	30	3.9
21	CRUM2_HUMAN (Q5IJ48) Crumbs homolog 2 precursor (Crumbs-like pro...	30	3.9
22	MYS_AEQIR (P24733) Myosin heavy chain, striated muscle	30	6.6
23	H1_EUPES (Q9M5W4) Histone H1	30	6.6
24	SMC1A_XENLA (O93308) Structural maintenance of chromosome 1 prot...	29	8.6
25	SMC1A_RAT (Q9Z1M9) Structural maintenance of chromosome 1-like 1...	29	8.6
26	SMC1A_MOUSE (Q9CU62) Structural maintenance of chromosome 1-like...	29	8.6
27	SMC1A_HUMAN (Q14683) Structural maintenance of chromosome 1-like...	29	8.6
28	SMC1A_BOVIN (O97593) Structural maintenance of chromosome 1-like...	29	8.6

>PSBO_WHEAT (P27665) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 325

 Score =  334 bits (857), Expect(2) = 5e-92
 Identities = 170/179 (94%), Positives = 171/179 (95%)
 Frame = +1

Query: 34  MAGFALATSALLVSGASAEGAPKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGVDSFPFK 213
           MAGFALATSALLVSGA+AEGAPKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGVDSFPFK
Sbjct: 62  MAGFALATSALLVSGATAEGAPKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGVDSFPFK 121

Query: 214 AGKYEMKKFCLEPTSFTVKAEGIQKNEPPAFQKTKLMTRLTYTLDEMEGPLEVGADGTLK 393
           AGKYEMKKFCLEPTSFTVKAEGIQKNEPP FQKTKLMTRLTYTLDEMEGPLEV    TLK
Sbjct: 122 AGKYEMKKFCLEPTSFTVKAEGIQKNEPPRFQKTKLMTRLTYTLDEMEGPLEVRRRRTLK 181

Query: 394 FEEKDGIDYAAVTVQLPGGERVPFLFTVKQLVATGKPESFSGPFLVPSYRGSSFLDPKG 570
           FEEKDGIDYAAVTVQLPGGERV FLFTVKQLVATGKPESF  PFLVPSYRGSSFLDPKG
Sbjct: 182 FEEKDGIDYAAVTVQLPGGERVAFLFTVKQLVATGKPESFR-PFLVPSYRGSSFLDPKG 239



 Score = 23.5 bits (49), Expect(2) = 5e-92
 Identities = 10/10 (100%), Positives = 10/10 (100%)
 Frame = +3

Query: 3  VASKCADAAK 32
          VASKCADAAK
Sbjct: 52 VASKCADAAK 61

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>PSBO_TOBAC (Q40459) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 332

 Score =  321 bits (822), Expect = 1e-87
 Identities = 157/179 (87%), Positives = 166/179 (92%)
 Frame = +1

Query: 34  MAGFALATSALLVSGASAEGAPKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGVDSFPFK 213
           +AGFALATSAL+VSGA+AEG PKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGV SF FK
Sbjct: 68  VAGFALATSALVVSGANAEGVPKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGVASFAFK 127

Query: 214 AGKYEMKKFCLEPTSFTVKAEGIQKNEPPAFQKTKLMTRLTYTLDEMEGPLEVGADGTLK 393
            GKY  KKFCLEPTSFTVKAE + KN PP FQKTKLMTRLTYTLDE+EGP EV +DGT+K
Sbjct: 128 PGKYNAKKFCLEPTSFTVKAESVNKNAPPDFQKTKLMTRLTYTLDEIEGPFEVSSDGTVK 187

Query: 394 FEEKDGIDYAAVTVQLPGGERVPFLFTVKQLVATGKPESFSGPFLVPSYRGSSFLDPKG 570
           FEEKDGIDYAAVTVQLPGGERVPFLFT+KQLVA+GKPESFSG FLVPSYRGSSFLDPKG
Sbjct: 188 FEEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPESFSGEFLVPSYRGSSFLDPKG 246

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>PSBO_FRIAG (O49079) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 329

 Score =  319 bits (818), Expect = 3e-87
 Identities = 155/179 (86%), Positives = 166/179 (92%)
 Frame = +1

Query: 34  MAGFALATSALLVSGASAEGAPKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGVDSFPFK 213
           +AGFALATSAL++SGASAEG PKRLTFDEIQSKTYMEVKG+GTANQCPTI+GG +SF +K
Sbjct: 65  LAGFALATSALVISGASAEGVPKRLTFDEIQSKTYMEVKGSGTANQCPTIEGGTESFGYK 124

Query: 214 AGKYEMKKFCLEPTSFTVKAEGIQKNEPPAFQKTKLMTRLTYTLDEMEGPLEVGADGTLK 393
            GKY +KK CLEPTSFTVKAEGI KN PP FQKTKLMTRLTYTLDE+EGP EV  DGT+K
Sbjct: 125 TGKYTLKKLCLEPTSFTVKAEGINKNAPPEFQKTKLMTRLTYTLDEIEGPFEVAPDGTVK 184

Query: 394 FEEKDGIDYAAVTVQLPGGERVPFLFTVKQLVATGKPESFSGPFLVPSYRGSSFLDPKG 570
           FEEKDGIDYAAVTVQLPGGERVPFLFTVKQLVATGKPESFSG +LVPSYRGSSFLDPKG
Sbjct: 185 FEEKDGIDYAAVTVQLPGGERVPFLFTVKQLVATGKPESFSGSYLVPSYRGSSFLDPKG 243

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>PSBO_SOLTU (P26320) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 333

 Score =  319 bits (818), Expect = 3e-87
 Identities = 157/179 (87%), Positives = 165/179 (92%)
 Frame = +1

Query: 34  MAGFALATSALLVSGASAEGAPKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGVDSFPFK 213
           +AGFALATSAL+VSGA+AEG PKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGVDSF FK
Sbjct: 68  IAGFALATSALVVSGANAEGVPKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGVDSFAFK 127

Query: 214 AGKYEMKKFCLEPTSFTVKAEGIQKNEPPAFQKTKLMTRLTYTLDEMEGPLEVGADGTLK 393
            GKY  KKFCLEPTSFTVKAEG+ KN  P FQKTKLMTRLTYTLDE+EGP EV  DGT+K
Sbjct: 128 PGKYNAKKFCLEPTSFTVKAEGVSKNSAPDFQKTKLMTRLTYTLDEIEGPFEVSPDGTVK 187

Query: 394 FEEKDGIDYAAVTVQLPGGERVPFLFTVKQLVATGKPESFSGPFLVPSYRGSSFLDPKG 570
           FEEKDGIDYAAVTVQLPGGERVPFLFT+KQLVA+GKPESFS  FLVPSYRGSSFLDPKG
Sbjct: 188 FEEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPESFSVDFLVPSYRGSSFLDPKG 246

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>PSBO_PEA (P14226) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 329

 Score =  319 bits (817), Expect = 4e-87
 Identities = 156/179 (87%), Positives = 167/179 (93%)
 Frame = +1

Query: 34  MAGFALATSALLVSGASAEGAPKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGVDSFPFK 213
           +AGFALATSAL+VSGASAEGAPKRLTFDEIQSKTY+EVKGTGTANQCPTIDGGVDSF FK
Sbjct: 64  IAGFALATSALVVSGASAEGAPKRLTFDEIQSKTYLEVKGTGTANQCPTIDGGVDSFSFK 123

Query: 214 AGKYEMKKFCLEPTSFTVKAEGIQKNEPPAFQKTKLMTRLTYTLDEMEGPLEVGADGTLK 393
            GKY  KK CLEPTSFTVK+EG+ KN P AFQ TKLMTRLTYTLDE+EGP EV ADG++K
Sbjct: 124 PGKYNAKKLCLEPTSFTVKSEGVTKNTPLAFQNTKLMTRLTYTLDEIEGPFEVSADGSVK 183

Query: 394 FEEKDGIDYAAVTVQLPGGERVPFLFTVKQLVATGKPESFSGPFLVPSYRGSSFLDPKG 570
           FEEKDGIDYAAVTVQLPGGERVPFLFT+KQLVA+GKP+SFSG FLVPSYRGSSFLDPKG
Sbjct: 184 FEEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPDSFSGEFLVPSYRGSSFLDPKG 242

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>PSBO_LYCES (P23322) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 329

 Score =  317 bits (812), Expect = 2e-86
 Identities = 155/179 (86%), Positives = 165/179 (92%)
 Frame = +1

Query: 34  MAGFALATSALLVSGASAEGAPKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGVDSFPFK 213
           +AGFALATSAL+VSGA+AEG PKRLT+DEIQSKTYMEVKGTGTANQCPTI+GGV SF FK
Sbjct: 65  IAGFALATSALVVSGANAEGVPKRLTYDEIQSKTYMEVKGTGTANQCPTIEGGVGSFAFK 124

Query: 214 AGKYEMKKFCLEPTSFTVKAEGIQKNEPPAFQKTKLMTRLTYTLDEMEGPLEVGADGTLK 393
            GKY  KKFCLEPTSFTVKAEG+ KN  P FQKTKLMTRLTYTLDE+EGP EV  DGT+K
Sbjct: 125 PGKYTAKKFCLEPTSFTVKAEGVSKNSAPDFQKTKLMTRLTYTLDEIEGPFEVSPDGTVK 184

Query: 394 FEEKDGIDYAAVTVQLPGGERVPFLFTVKQLVATGKPESFSGPFLVPSYRGSSFLDPKG 570
           FEEKDGIDYAAVTVQLPGGERVPFLFT+KQLVA+GKPESFSG FLVPSYRGSSFLDPKG
Sbjct: 185 FEEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPESFSGEFLVPSYRGSSFLDPKG 243

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>PSBO2_ARATH (Q9S841) Oxygen-evolving enhancer protein 1-2, chloroplast|
           precursor (OEE1) (33 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 33 kDa subunit) (33 kDa
           thylakoid membrane protein)
          Length = 331

 Score =  311 bits (796), Expect = 1e-84
 Identities = 151/179 (84%), Positives = 165/179 (92%)
 Frame = +1

Query: 34  MAGFALATSALLVSGASAEGAPKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGVDSFPFK 213
           +AGFALATSAL+VSGA AEGAPKRLT+DEIQSKTYMEVKGTGTANQCPTIDGG ++F FK
Sbjct: 67  IAGFALATSALVVSGAGAEGAPKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGSETFSFK 126

Query: 214 AGKYEMKKFCLEPTSFTVKAEGIQKNEPPAFQKTKLMTRLTYTLDEMEGPLEVGADGTLK 393
           AGKY  KKFC EPTSFTVKA+ + KN PP FQ TKLMTRLTYTLDE+EGP EVG+DG++K
Sbjct: 127 AGKYTGKKFCFEPTSFTVKADSVSKNAPPDFQNTKLMTRLTYTLDEIEGPFEVGSDGSVK 186

Query: 394 FEEKDGIDYAAVTVQLPGGERVPFLFTVKQLVATGKPESFSGPFLVPSYRGSSFLDPKG 570
           F+E+DGIDYAAVTVQLPGGERVPFLFTVKQL A+GKPESFSG FLVPSYRGSSFLDPKG
Sbjct: 187 FKEEDGIDYAAVTVQLPGGERVPFLFTVKQLEASGKPESFSGKFLVPSYRGSSFLDPKG 245

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>PSBO1_ARATH (P23321) Oxygen-evolving enhancer protein 1-1, chloroplast|
           precursor (OEE1) (33 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 33 kDa subunit) (33 kDa
           thylakoid membrane protein)
          Length = 332

 Score =  304 bits (778), Expect = 1e-82
 Identities = 147/179 (82%), Positives = 163/179 (91%)
 Frame = +1

Query: 34  MAGFALATSALLVSGASAEGAPKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGVDSFPFK 213
           +AGFALATSAL+VSGASAEGAPKRLT+DEIQSKTYMEVKGTGTANQCPTIDGG ++F FK
Sbjct: 68  IAGFALATSALVVSGASAEGAPKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGSETFSFK 127

Query: 214 AGKYEMKKFCLEPTSFTVKAEGIQKNEPPAFQKTKLMTRLTYTLDEMEGPLEVGADGTLK 393
            GKY  KKFC EPTSFTVKA+ + KN PP FQ TKLMTRLTYTLDE+EGP EV +DG++ 
Sbjct: 128 PGKYAGKKFCFEPTSFTVKADSVSKNAPPEFQNTKLMTRLTYTLDEIEGPFEVASDGSVN 187

Query: 394 FEEKDGIDYAAVTVQLPGGERVPFLFTVKQLVATGKPESFSGPFLVPSYRGSSFLDPKG 570
           F+E+DGIDYAAVTVQLPGGERVPFLFTVKQL A+GKP+SF+G FLVPSYRGSSFLDPKG
Sbjct: 188 FKEEDGIDYAAVTVQLPGGERVPFLFTVKQLDASGKPDSFTGKFLVPSYRGSSFLDPKG 246

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>PSBO_SPIOL (P12359) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 332

 Score =  303 bits (776), Expect = 2e-82
 Identities = 149/179 (83%), Positives = 161/179 (89%)
 Frame = +1

Query: 34  MAGFALATSALLVSGASAEGAPKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGVDSFPFK 213
           +AG ALATSAL+ SGA+AEG  KRLT+DEIQSKTY+EVKGTGTANQCPT++GGVDSF FK
Sbjct: 67  LAGLALATSALIASGANAEGG-KRLTYDEIQSKTYLEVKGTGTANQCPTVEGGVDSFAFK 125

Query: 214 AGKYEMKKFCLEPTSFTVKAEGIQKNEPPAFQKTKLMTRLTYTLDEMEGPLEVGADGTLK 393
            GKY  KKFCLEPT F VKAEGI KN  P FQ TKLMTRLTYTLDE+EGP EV +DGT+K
Sbjct: 126 PGKYTAKKFCLEPTKFAVKAEGISKNSGPDFQNTKLMTRLTYTLDEIEGPFEVSSDGTVK 185

Query: 394 FEEKDGIDYAAVTVQLPGGERVPFLFTVKQLVATGKPESFSGPFLVPSYRGSSFLDPKG 570
           FEEKDGIDYAAVTVQLPGGERVPFLFT+KQLVA+GKPESFSG FLVPSYRGSSFLDPKG
Sbjct: 186 FEEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPESFSGDFLVPSYRGSSFLDPKG 244

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>PSBO_VOLCA (Q9SBN6) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1)
          Length = 293

 Score =  204 bits (520), Expect = 1e-52
 Identities = 100/177 (56%), Positives = 126/177 (71%), Gaps = 1/177 (0%)
 Frame = +1

Query: 43  FALATSALLVSGASAEGAPKRLTFDEIQSKTYMEVKGTGTANQCPTID-GGVDSFPFKAG 219
           F  A +A++ + A   G+   LT+DE+Q  TY++VKGTG AN CP ++ G  D     AG
Sbjct: 32  FGQAAAAVVAASALVAGSANALTYDELQGLTYLQVKGTGIANTCPVLEKGSTDLSELSAG 91

Query: 220 KYEMKKFCLEPTSFTVKAEGIQKNEPPAFQKTKLMTRLTYTLDEMEGPLEVGADGTLKFE 399
            Y+++ FC+EPTSFTVK E + K     F KTKLMTRLTYTLD M G L+VG+DG+ + +
Sbjct: 92  TYKLENFCIEPTSFTVKEESVFKGGETEFVKTKLMTRLTYTLDAMSGTLKVGSDGSAELK 151

Query: 400 EKDGIDYAAVTVQLPGGERVPFLFTVKQLVATGKPESFSGPFLVPSYRGSSFLDPKG 570
           E+DGIDYAA TVQLPGGERV FLFT+KQ    G  ++  G F+VPSYRGSSFLDPKG
Sbjct: 152 EEDGIDYAATTVQLPGGERVAFLFTIKQFDGKGTLDNIKGDFVVPSYRGSSFLDPKG 208

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>PSBO_CHLRE (P12853) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1)
          Length = 291

 Score =  199 bits (507), Expect = 4e-51
 Identities = 100/174 (57%), Positives = 121/174 (69%), Gaps = 1/174 (0%)
 Frame = +1

Query: 52  ATSALLVSGASAEGAPKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGVDSFP-FKAGKYE 228
           A +A  ++ A   G+   LTFDEIQ  TY++VKG+G AN CP ++ G  +    KAG Y+
Sbjct: 34  AAAAAALATAMVAGSANALTFDEIQGLTYLQVKGSGIANTCPVLESGTTNLKELKAGSYK 93

Query: 229 MKKFCLEPTSFTVKAEGIQKNEPPAFQKTKLMTRLTYTLDEMEGPLEVGADGTLKFEEKD 408
           ++ FC+EPTSFTVK E   K     F KTKLMTRLTYTLD M G  +VG+DG+ + +E D
Sbjct: 94  LENFCIEPTSFTVKEESQFKGGETEFVKTKLMTRLTYTLDAMSGSFKVGSDGSAELKEDD 153

Query: 409 GIDYAAVTVQLPGGERVPFLFTVKQLVATGKPESFSGPFLVPSYRGSSFLDPKG 570
           GIDYAA TVQLPGGERV FLFT+KQ    G  +   G FLVPSYRGSSFLDPKG
Sbjct: 154 GIDYAATTVQLPGGERVAFLFTIKQFDGKGTLDGIKGDFLVPSYRGSSFLDPKG 207

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>PSBO_EUGGR (P46483) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1)
          Length = 338

 Score =  190 bits (482), Expect = 3e-48
 Identities = 99/181 (54%), Positives = 122/181 (67%), Gaps = 2/181 (1%)
 Frame = +1

Query: 34  MAGFALATSALLVSGASAEGA-PKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGVDS-FP 207
           +AG   A  A L+  A A  A    LT+DE+QS +Y+EVK +G A  CP +  GV S   
Sbjct: 71  LAGAGRAMGAALIGAAVAGSANAASLTYDELQSLSYLEVKSSGIAGTCPVLADGVSSKLS 130

Query: 208 FKAGKYEMKKFCLEPTSFTVKAEGIQKNEPPAFQKTKLMTRLTYTLDEMEGPLEVGADGT 387
            KAGKYE+  +CLEP+SF VK    +K +   F++TKLMTRLTYTLD +   L VG DG+
Sbjct: 131 LKAGKYEINNWCLEPSSFQVKLPPTEKQQVTEFERTKLMTRLTYTLDAISADLNVGGDGS 190

Query: 388 LKFEEKDGIDYAAVTVQLPGGERVPFLFTVKQLVATGKPESFSGPFLVPSYRGSSFLDPK 567
              +EKDG+DYAA TVQL GGERVPFLFT+K L+A G    F G F VPSYRG++FLDPK
Sbjct: 191 WTIQEKDGLDYAATTVQLAGGERVPFLFTIKNLLAKGDAGQFLGQFDVPSYRGATFLDPK 250

Query: 568 G 570
           G
Sbjct: 251 G 251

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>PSBO_ANASP (P13907) Photosystem II manganese-stabilizing polypeptide precursor|
           (MSP)
          Length = 273

 Score =  150 bits (379), Expect = 3e-36
 Identities = 78/156 (50%), Positives = 102/156 (65%), Gaps = 10/156 (6%)
 Frame = +1

Query: 133 TYMEVKGTGTANQCPTI-DGGVDSFPFKAGK-YEMKKFCLEPTSFTVKAEGIQKNEPPAF 306
           TY +++GTG AN+CP + +    S P  + K Y +K+ CLEPT+F VK E   K +   F
Sbjct: 34  TYEQIRGTGLANKCPQLTETSRGSIPLDSSKSYVLKELCLEPTNFFVKEEPANKRQTAEF 93

Query: 307 QKTKLMTRLTYTLDEMEGPLEVGADGTLKFEEKDGIDYAAVTVQLPGGERVPFLFTVKQL 486
              KL+TR T T+D++ G L+   D +L F EKDG+D+ A+TVQLPGGERVPFLFT+K L
Sbjct: 94  VAGKLLTRYTSTIDQVSGDLKFNDDSSLTFVEKDGLDFQAITVQLPGGERVPFLFTIKNL 153

Query: 487 VATGKP--------ESFSGPFLVPSYRGSSFLDPKG 570
           VA  +P          F G F VPSYRG++FLDPKG
Sbjct: 154 VAQTQPGLSSLNTSTDFEGTFKVPSYRGAAFLDPKG 189

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>PSBO_SYNEN (P0A432) Photosystem II manganese-stabilizing polypeptide precursor|
           (MSP)
          Length = 272

 Score =  147 bits (371), Expect = 2e-35
 Identities = 82/184 (44%), Positives = 115/184 (62%), Gaps = 10/184 (5%)
 Frame = +1

Query: 49  LATSALLVSGASAEGAPKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGV-DSFPFKAGK- 222
           +AT   +  G  +  AP    F   Q+ TY ++ GTG AN+CPT+D     ++P  + + 
Sbjct: 7   MATLLAVCLGIFSLSAP---AFAAKQTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQT 63

Query: 223 YEMKKFCLEPTSFTVKAEGIQKNEPPAFQKTKLMTRLTYTLDEMEGPLEVGADGTLKFEE 402
           Y + + CL+PT+F VK E   K +   F  TKL+TR T +LD+++G L+V +DG+L F E
Sbjct: 64  YRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVE 123

Query: 403 KDGIDYAAVTVQLPGGERVPFLFTVKQLVATGKPE--------SFSGPFLVPSYRGSSFL 558
           +DGID+  VTVQ+ GGER+P LFTVK LVA+ +P          F G F VPSYR ++FL
Sbjct: 124 EDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANFL 183

Query: 559 DPKG 570
           DPKG
Sbjct: 184 DPKG 187

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>PSBO_SYNEL (P0A431) Photosystem II manganese-stabilizing polypeptide precursor|
           (MSP)
          Length = 272

 Score =  147 bits (371), Expect = 2e-35
 Identities = 82/184 (44%), Positives = 115/184 (62%), Gaps = 10/184 (5%)
 Frame = +1

Query: 49  LATSALLVSGASAEGAPKRLTFDEIQSKTYMEVKGTGTANQCPTIDGGV-DSFPFKAGK- 222
           +AT   +  G  +  AP    F   Q+ TY ++ GTG AN+CPT+D     ++P  + + 
Sbjct: 7   MATLLAVCLGIFSLSAP---AFAAKQTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQT 63

Query: 223 YEMKKFCLEPTSFTVKAEGIQKNEPPAFQKTKLMTRLTYTLDEMEGPLEVGADGTLKFEE 402
           Y + + CL+PT+F VK E   K +   F  TKL+TR T +LD+++G L+V +DG+L F E
Sbjct: 64  YRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVE 123

Query: 403 KDGIDYAAVTVQLPGGERVPFLFTVKQLVATGKPE--------SFSGPFLVPSYRGSSFL 558
           +DGID+  VTVQ+ GGER+P LFTVK LVA+ +P          F G F VPSYR ++FL
Sbjct: 124 EDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANFL 183

Query: 559 DPKG 570
           DPKG
Sbjct: 184 DPKG 187

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>PSBO_SYNY3 (P10549) Photosystem II manganese-stabilizing polypeptide precursor|
           (MSP)
          Length = 274

 Score =  134 bits (337), Expect = 2e-31
 Identities = 72/157 (45%), Positives = 94/157 (59%), Gaps = 12/157 (7%)
 Frame = +1

Query: 133 TYMEVKGTGTANQCPTID----GGVDSFPFKAGKYEMKKFCLEPTSFTVKAEGIQKNEPP 300
           TY ++  TG AN CP I     G ++  P    KY +  FC+EP  + VK E + K +  
Sbjct: 35  TYDDIVNTGLANVCPEISSFTRGTIEVEPNT--KYFVSDFCMEPQEYFVKEEPVNKRQKA 92

Query: 301 AFQKTKLMTRLTYTLDEMEGPLEVGADGTLKFEEKDGIDYAAVTVQLPGGERVPFLFTVK 480
            + K K++TR T +L+++ G + VGADGTL F+EKDGID+  +TV LPGGE VPF FTVK
Sbjct: 93  EYVKGKVLTRQTTSLEQIRGSIAVGADGTLTFKEKDGIDFQPITVLLPGGEEVPFFFTVK 152

Query: 481 QLVATGKP--------ESFSGPFLVPSYRGSSFLDPK 567
               T +P          F G F VPSYRG+ FLDPK
Sbjct: 153 NFTGTTEPGFTSINSSTDFVGDFNVPSYRGAGFLDPK 189

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>PSBO_CYAA5 (Q9R6W6) Photosystem II manganese-stabilizing polypeptide precursor|
           (MSP)
          Length = 275

 Score =  130 bits (328), Expect = 2e-30
 Identities = 71/159 (44%), Positives = 94/159 (59%), Gaps = 10/159 (6%)
 Frame = +1

Query: 124 QSKTYMEVKGTGTANQCPTIDGGV-DSFPFKAGK-YEMKKFCLEPTSFTVKAEGIQKNEP 297
           Q  TY E+  TG AN+CP I      S P + G+ Y +   CLEP  + VK E + K + 
Sbjct: 32  QDLTYDEILNTGLANKCPQISEFTRGSIPIEPGQTYFVDDLCLEPQEYFVKEEPVNKRQE 91

Query: 298 PAFQKTKLMTRLTYTLDEMEGPLEVGADGTLKFEEKDGIDYAAVTVQLPGGERVPFLFTV 477
             +   KL+TR T +L+++ G + V  DG + F E+ GID+  VTVQLPGGE+VPF FT+
Sbjct: 92  AEYVPGKLLTRYTTSLEQISGKITVDEDGVVTFYEEGGIDFQPVTVQLPGGEQVPFFFTI 151

Query: 478 KQLVATGKPE--------SFSGPFLVPSYRGSSFLDPKG 570
           K LV   +P          F G F VPSYRG++FLDPKG
Sbjct: 152 KNLVGKTEPGFSSINSSIDFEGDFRVPSYRGATFLDPKG 190

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>PSBO_SYNP7 (P11472) Photosystem II manganese-stabilizing polypeptide precursor|
           (MSP)
          Length = 277

 Score =  129 bits (325), Expect = 5e-30
 Identities = 75/163 (46%), Positives = 101/163 (61%), Gaps = 10/163 (6%)
 Frame = +1

Query: 109 TFDEIQSKTYMEVKGTGTANQCPTI-DGGVDSFPFKAGK-YEMKKFCLEPTSFTVKAEGI 282
           T  ++ + TY ++K TG AN+C ++ +    + P +AGK Y +   CLEP  F VK E  
Sbjct: 26  TAADLGTLTYDQIKDTGLANKCLSLKESARGTIPLEAGKKYALTDLCLEPQEFFVKEEPG 85

Query: 283 QKNEPPAFQKTKLMTRLTYTLDEMEGPLEVGADGTLKFEEKDGIDYAAVTVQLPGGERVP 462
            K +   F   K++TR T +LD++ G L + ADGT+ F EK GID+ A+TV LPGGE VP
Sbjct: 86  NKRQKAEFVPGKVLTRYTSSLDQVYGDLALKADGTVSFTEKGGIDFQAITVLLPGGEEVP 145

Query: 463 FLFTVKQLVA-TGKPES-------FSGPFLVPSYRGSSFLDPK 567
           FLFTVK LVA T +P +         G + VPSYR S+FLDPK
Sbjct: 146 FLFTVKGLVASTSEPATSINTSTDLRGGYRVPSYRTSNFLDPK 188

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>PSBO_BRARA (P83504) Oxygen-evolving enhancer protein 1, chloroplast (OEE1)|
           (Fragment)
          Length = 31

 Score = 67.0 bits (162), Expect = 4e-11
 Identities = 30/31 (96%), Positives = 31/31 (100%)
 Frame = +1

Query: 88  EGAPKRLTFDEIQSKTYMEVKGTGTANQCPT 180
           EGAPKRLT+DEIQSKTYMEVKGTGTANQCPT
Sbjct: 1   EGAPKRLTYDEIQSKTYMEVKGTGTANQCPT 31

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>MYO2_CAEEL (P12845) Myosin-2 (Myosin heavy chain C) (MHC C)|
          Length = 1947

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +1

Query: 262 TVKAEGIQKNEPPAFQKTKLMTRLTYTLD 348
           TVK + +Q+  PP F+KT+ M+ LT+  D
Sbjct: 66  TVKKDVVQEMNPPKFEKTEDMSNLTFLND 94

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>CRUM2_HUMAN (Q5IJ48) Crumbs homolog 2 precursor (Crumbs-like protein 2)|
          Length = 1285

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 147 HLHVGLALDFVEGQPLGRPLRTCARDEEGRGC 52
           H+HVG  L   + QP G P R C +D    GC
Sbjct: 744 HVHVGGRLLAADSQPWGGPFRGCLQDLRLDGC 775

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>MYS_AEQIR (P24733) Myosin heavy chain, striated muscle|
          Length = 1938

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 235 KFCLEPTSFTVKAEGIQKNEPPAFQKTKLMTRLTY 339
           K   + ++ TVK + IQ   PP F+K + M  +TY
Sbjct: 59  KIVADSSTRTVKKDDIQSMNPPKFEKLEDMANMTY 93

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>H1_EUPES (Q9M5W4) Histone H1|
          Length = 229

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 436 QLPGGERVPFLFTVKQLVATGKPESFSGPFLVPSYRGS 549
           QLP   R   LF +K+LVA+GK       F +PS R +
Sbjct: 86  QLPSNFRKLLLFHLKKLVASGKLVKVKNSFKLPSARAA 123

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>SMC1A_XENLA (O93308) Structural maintenance of chromosome 1 protein (xSMC1)|
          Length = 1232

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -3

Query: 222 LAGLEGEGVDAAVDGRALVRGAGTLHLHVGLALDFVEGQPLGRP 91
           + G  G G    +D  + V G  T +L V    D + G P+G+P
Sbjct: 30  IIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRDLIHGAPVGKP 73

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>SMC1A_RAT (Q9Z1M9) Structural maintenance of chromosome 1-like 1 protein|
           (SMC-protein)
          Length = 1233

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -3

Query: 222 LAGLEGEGVDAAVDGRALVRGAGTLHLHVGLALDFVEGQPLGRP 91
           + G  G G    +D  + V G  T +L V    D + G P+G+P
Sbjct: 30  IIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRDLIHGAPVGKP 73

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>SMC1A_MOUSE (Q9CU62) Structural maintenance of chromosome 1-like 1 protein|
           (SMC1alpha protein) (Chromosome segregation protein
           SmcB) (Sb1.8)
          Length = 1233

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -3

Query: 222 LAGLEGEGVDAAVDGRALVRGAGTLHLHVGLALDFVEGQPLGRP 91
           + G  G G    +D  + V G  T +L V    D + G P+G+P
Sbjct: 30  IIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRDLIHGAPVGKP 73

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>SMC1A_HUMAN (Q14683) Structural maintenance of chromosome 1-like 1 protein|
           (SMC1alpha protein) (DXS423E protein) (Sb1.8)
          Length = 1233

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -3

Query: 222 LAGLEGEGVDAAVDGRALVRGAGTLHLHVGLALDFVEGQPLGRP 91
           + G  G G    +D  + V G  T +L V    D + G P+G+P
Sbjct: 30  IIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRDLIHGAPVGKP 73

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>SMC1A_BOVIN (O97593) Structural maintenance of chromosome 1-like 1 protein|
           (SMC-protein)
          Length = 1233

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -3

Query: 222 LAGLEGEGVDAAVDGRALVRGAGTLHLHVGLALDFVEGQPLGRP 91
           + G  G G    +D  + V G  T +L V    D + G P+G+P
Sbjct: 30  IIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRDLIHGAPVGKP 73


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.134    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,381,891
Number of Sequences: 219361
Number of extensions: 1283544
Number of successful extensions: 3617
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 3522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3603
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4986986160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result