| Clone Name | baal29p17 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK072081.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116G03, full insert sequence Length = 1683 Score = 692 bits (349), Expect = 0.0 Identities = 541/605 (89%) Strand = Plus / Plus Query: 1 gcggagtcgtgcgtcaacctcggcctcgagttcttctccaagggcagggtgaaggacgca 60 |||||||||||||||||||| || |||||| ||||||||||||||||||||||||| || Sbjct: 255 gcggagtcgtgcgtcaacctgggactcgagctcttctccaagggcagggtgaaggatgct 314 Query: 61 cttgaacaatttgacaaggccctagagctgaatccaaatcctaccgaagcccaagcagcg 120 |||||||||||||| || |||||||||||||||||||||||| |||||||||||||| Sbjct: 315 cttgaacaatttgagaatgccctagagctgaatccaaatcctgttgaagcccaagcagca 374 Query: 121 ttctataacaaggcatgctgccatgcatacagggaagaaagcaaaaaagctgcagattgc 180 | || || || |||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct: 375 ctatacaataaagcatgctgccatgcatttagggaagaaagcaacaaagctgcagattgc 434 Query: 181 ttgagaatagctttgcgagattacaatctcaaatttggcacagtacttaatgatccagac 240 || || | |||| |||||||||| |||||||| ||||| || ||||||||||||| ||| Sbjct: 435 ttaaggacagctctgcgagattataatctcaagtttggtactatacttaatgatcctgac 494 Query: 241 atggcgccattcagggcatcaccagaatttaaggaacttcaagaggaggcattgcgtggt 300 |||| || |||||||||||||| ||||| |||||||||||||| ||||||||||||||| Sbjct: 495 ttggcaccgttcagggcatcaccggaattcaaggaacttcaagaagaggcattgcgtggt 554 Query: 301 ggagaagatattggttctggattccgaagagatctaaagcttattagtgaagtacaagca 360 |||||||||||||||||||| ||||||||||| || || || |||||||||||||||||| Sbjct: 555 ggagaagatattggttctgggttccgaagagacctgaaactcattagtgaagtacaagca 614 Query: 361 ccatttcgtggtgtccggaggttcttttatgtggcgttcattgcagcggctggaatttca 420 ||||||||||||||||| |||||||||||||||||||| | |||||| |||||||||||| Sbjct: 615 ccatttcgtggtgtccgaaggttcttttatgtggcgttaactgcagcagctggaatttca 674 Query: 421 acattctttaccattcccagacttatacttgcacttcaaggtggtgatggtgctccagat 480 ||||||||||||||||| ||||||||||||||| |||||||||| |||||||| || ||| Sbjct: 675 acattctttaccattcctagacttatacttgcagttcaaggtggcgatggtgcccctgat 734 Query: 481 tttctggaaacggctgggaatgctgccattaatattggaggtattgttgtgctcgtggct 540 | |||||||| | ||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 735 ctgctggaaactgttgggaatgctgccatcaatattggaggtattgttgtgctcgtggct 794 Query: 541 ttatttgtctgggaaaacaagaaagaagaagagcagattacaaatatctctcgtaatgaa 600 || | | |||||||||||||||||||||| ||||||| ||| | || ||||| |||||| Sbjct: 795 ttgtatttctgggaaaacaagaaagaagagcagcagatcacacaaatttctcgcaatgaa 854 Query: 601 accct 605 ||||| Sbjct: 855 accct 859
>dbj|AK060388.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-009-G10, full insert sequence Length = 1542 Score = 692 bits (349), Expect = 0.0 Identities = 541/605 (89%) Strand = Plus / Plus Query: 1 gcggagtcgtgcgtcaacctcggcctcgagttcttctccaagggcagggtgaaggacgca 60 |||||||||||||||||||| || |||||| ||||||||||||||||||||||||| || Sbjct: 257 gcggagtcgtgcgtcaacctgggactcgagctcttctccaagggcagggtgaaggatgct 316 Query: 61 cttgaacaatttgacaaggccctagagctgaatccaaatcctaccgaagcccaagcagcg 120 |||||||||||||| || |||||||||||||||||||||||| |||||||||||||| Sbjct: 317 cttgaacaatttgagaatgccctagagctgaatccaaatcctgttgaagcccaagcagca 376 Query: 121 ttctataacaaggcatgctgccatgcatacagggaagaaagcaaaaaagctgcagattgc 180 | || || || |||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct: 377 ctatacaataaagcatgctgccatgcatttagggaagaaagcaacaaagctgcagattgc 436 Query: 181 ttgagaatagctttgcgagattacaatctcaaatttggcacagtacttaatgatccagac 240 || || | |||| |||||||||| |||||||| ||||| || ||||||||||||| ||| Sbjct: 437 ttaaggacagctctgcgagattataatctcaagtttggtactatacttaatgatcctgac 496 Query: 241 atggcgccattcagggcatcaccagaatttaaggaacttcaagaggaggcattgcgtggt 300 |||| || |||||||||||||| ||||| |||||||||||||| ||||||||||||||| Sbjct: 497 ttggcaccgttcagggcatcaccggaattcaaggaacttcaagaagaggcattgcgtggt 556 Query: 301 ggagaagatattggttctggattccgaagagatctaaagcttattagtgaagtacaagca 360 |||||||||||||||||||| ||||||||||| || || || |||||||||||||||||| Sbjct: 557 ggagaagatattggttctgggttccgaagagacctgaaactcattagtgaagtacaagca 616 Query: 361 ccatttcgtggtgtccggaggttcttttatgtggcgttcattgcagcggctggaatttca 420 ||||||||||||||||| |||||||||||||||||||| | |||||| |||||||||||| Sbjct: 617 ccatttcgtggtgtccgaaggttcttttatgtggcgttaactgcagcagctggaatttca 676 Query: 421 acattctttaccattcccagacttatacttgcacttcaaggtggtgatggtgctccagat 480 ||||||||||||||||| ||||||||||||||| |||||||||| |||||||| || ||| Sbjct: 677 acattctttaccattcctagacttatacttgcagttcaaggtggcgatggtgcccctgat 736 Query: 481 tttctggaaacggctgggaatgctgccattaatattggaggtattgttgtgctcgtggct 540 | |||||||| | ||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 737 ctgctggaaactgttgggaatgctgccatcaatattggaggtattgttgtgctcgtggct 796 Query: 541 ttatttgtctgggaaaacaagaaagaagaagagcagattacaaatatctctcgtaatgaa 600 || | | |||||||||||||||||||||| ||||||| ||| | || ||||| |||||| Sbjct: 797 ttgtatttctgggaaaacaagaaagaagagcagcagatcacacaaatttctcgcaatgaa 856 Query: 601 accct 605 ||||| Sbjct: 857 accct 861
>ref|NM_193993.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 813 Score = 363 bits (183), Expect = 4e-97 Identities = 252/275 (91%) Strand = Plus / Plus Query: 248 cattcagggcatcaccagaatttaaggaacttcaagaggaggcattgcgtggtggagaag 307 |||| ||||||||||| ||||| |||||||||||||| |||||||||||||||||||||| Sbjct: 377 catttagggcatcaccggaattcaaggaacttcaagaagaggcattgcgtggtggagaag 436 Query: 308 atattggttctggattccgaagagatctaaagcttattagtgaagtacaagcaccatttc 367 ||||||||||||| ||||||||||| || || || ||||||||||||||||||||||||| Sbjct: 437 atattggttctgggttccgaagagacctgaaactcattagtgaagtacaagcaccatttc 496 Query: 368 gtggtgtccggaggttcttttatgtggcgttcattgcagcggctggaatttcaacattct 427 |||||||||| |||||||||||||||||||| | |||||| ||||||||||||||||||| Sbjct: 497 gtggtgtccgaaggttcttttatgtggcgttaactgcagcagctggaatttcaacattct 556 Query: 428 ttaccattcccagacttatacttgcacttcaaggtggtgatggtgctccagattttctgg 487 |||||||||| ||||||||||||||| |||||||||| |||||||| || ||| | |||| Sbjct: 557 ttaccattcctagacttatacttgcagttcaaggtggcgatggtgcccctgatctgctgg 616 Query: 488 aaacggctgggaatgctgccattaatattggaggt 522 |||| | ||||||||||||||| |||||||||||| Sbjct: 617 aaactgttgggaatgctgccatcaatattggaggt 651 Score = 167 bits (84), Expect = 5e-38 Identities = 132/148 (89%) Strand = Plus / Plus Query: 1 gcggagtcgtgcgtcaacctcggcctcgagttcttctccaagggcagggtgaaggacgca 60 |||||||||||||||||||| || |||||| ||||||||||||||||||||||||| || Sbjct: 232 gcggagtcgtgcgtcaacctgggactcgagctcttctccaagggcagggtgaaggatgct 291 Query: 61 cttgaacaatttgacaaggccctagagctgaatccaaatcctaccgaagcccaagcagcg 120 |||||||||||||| || |||||||||||||||||||||||| |||||||||||||| Sbjct: 292 cttgaacaatttgagaatgccctagagctgaatccaaatcctgttgaagcccaagcagca 351 Query: 121 ttctataacaaggcatgctgccatgcat 148 | || || || |||||||||||||||| Sbjct: 352 ctatacaataaagcatgctgccatgcat 379
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 319 bits (161), Expect = 6e-84 Identities = 218/237 (91%) Strand = Plus / Minus Query: 287 aggcattgcgtggtggagaagatattggttctggattccgaagagatctaaagcttatta 346 |||||||||||||||||||||||||||||||||| ||||||||||| || || || |||| Sbjct: 14493237 aggcattgcgtggtggagaagatattggttctgggttccgaagagacctgaaactcatta 14493178 Query: 347 gtgaagtacaagcaccatttcgtggtgtccggaggttcttttatgtggcgttcattgcag 406 ||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||| Sbjct: 14493177 gtgaagtacaagcaccatttcgtggtgtccgaaggttcttttatgtggcgttaactgcag 14493118 Query: 407 cggctggaatttcaacattctttaccattcccagacttatacttgcacttcaaggtggtg 466 | ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| | Sbjct: 14493117 cagctggaatttcaacattctttaccattcctagacttatacttgcagttcaaggtggcg 14493058 Query: 467 atggtgctccagattttctggaaacggctgggaatgctgccattaatattggaggta 523 ||||||| || ||| | |||||||| | ||||||||||||||| ||||||||||||| Sbjct: 14493057 atggtgcccctgatctgctggaaactgttgggaatgctgccatcaatattggaggta 14493001 Score = 143 bits (72), Expect = 8e-31 Identities = 123/140 (87%) Strand = Plus / Minus Query: 150 cagggaagaaagcaaaaaagctgcagattgcttgagaatagctttgcgagattacaatct 209 ||||||||||||||| ||||||||||||||||| || | |||| |||||||||| ||||| Sbjct: 14493898 cagggaagaaagcaacaaagctgcagattgcttaaggacagctctgcgagattataatct 14493839 Query: 210 caaatttggcacagtacttaatgatccagacatggcgccattcagggcatcaccagaatt 269 ||| ||||| || ||||||||||||| ||| |||| || |||||||||||||| ||||| Sbjct: 14493838 caagtttggtactatacttaatgatcctgacttggcaccgttcagggcatcaccggaatt 14493779 Query: 270 taaggaacttcaagaggagg 289 |||||||||||||| |||| Sbjct: 14493778 caaggaacttcaagaagagg 14493759 Score = 97.6 bits (49), Expect = 4e-17 Identities = 88/101 (87%) Strand = Plus / Minus Query: 48 ggtgaaggacgcacttgaacaatttgacaaggccctagagctgaatccaaatcctaccga 107 ||||||||| || |||||||||||||| || |||||||||||||||||||||||| || Sbjct: 14494086 ggtgaaggatgctcttgaacaatttgagaatgccctagagctgaatccaaatcctgttga 14494027 Query: 108 agcccaagcagcgttctataacaaggcatgctgccatgcat 148 |||||||||||| | || || || |||||||||||||||| Sbjct: 14494026 agcccaagcagcactatacaataaagcatgctgccatgcat 14493986 Score = 93.7 bits (47), Expect = 6e-16 Identities = 77/87 (88%) Strand = Plus / Minus Query: 519 aggtattgttgtgctcgtggctttatttgtctgggaaaacaagaaagaagaagagcagat 578 |||||||||||||||||||||||| | | |||||||||||||||||||||| ||||||| Sbjct: 14492154 aggtattgttgtgctcgtggctttgtatttctgggaaaacaagaaagaagagcagcagat 14492095 Query: 579 tacaaatatctctcgtaatgaaaccct 605 ||| | || ||||| ||||||||||| Sbjct: 14492094 cacacaaatttctcgcaatgaaaccct 14492068 Score = 79.8 bits (40), Expect = 1e-11 Identities = 49/52 (94%) Strand = Plus / Minus Query: 1 gcggagtcgtgcgtcaacctcggcctcgagttcttctccaagggcagggtga 52 |||||||||||||||||||| || |||||| ||||||||||||||||||||| Sbjct: 14495756 gcggagtcgtgcgtcaacctgggactcgagctcttctccaagggcagggtga 14495705 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 tcttttatgtggcgttcatt 402 |||||||||||||||||||| Sbjct: 29973941 tcttttatgtggcgttcatt 29973922
>dbj|AP003275.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0514H03 Length = 167230 Score = 319 bits (161), Expect = 6e-84 Identities = 218/237 (91%) Strand = Plus / Minus Query: 287 aggcattgcgtggtggagaagatattggttctggattccgaagagatctaaagcttatta 346 |||||||||||||||||||||||||||||||||| ||||||||||| || || || |||| Sbjct: 52550 aggcattgcgtggtggagaagatattggttctgggttccgaagagacctgaaactcatta 52491 Query: 347 gtgaagtacaagcaccatttcgtggtgtccggaggttcttttatgtggcgttcattgcag 406 ||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||| Sbjct: 52490 gtgaagtacaagcaccatttcgtggtgtccgaaggttcttttatgtggcgttaactgcag 52431 Query: 407 cggctggaatttcaacattctttaccattcccagacttatacttgcacttcaaggtggtg 466 | ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| | Sbjct: 52430 cagctggaatttcaacattctttaccattcctagacttatacttgcagttcaaggtggcg 52371 Query: 467 atggtgctccagattttctggaaacggctgggaatgctgccattaatattggaggta 523 ||||||| || ||| | |||||||| | ||||||||||||||| ||||||||||||| Sbjct: 52370 atggtgcccctgatctgctggaaactgttgggaatgctgccatcaatattggaggta 52314 Score = 143 bits (72), Expect = 8e-31 Identities = 123/140 (87%) Strand = Plus / Minus Query: 150 cagggaagaaagcaaaaaagctgcagattgcttgagaatagctttgcgagattacaatct 209 ||||||||||||||| ||||||||||||||||| || | |||| |||||||||| ||||| Sbjct: 53211 cagggaagaaagcaacaaagctgcagattgcttaaggacagctctgcgagattataatct 53152 Query: 210 caaatttggcacagtacttaatgatccagacatggcgccattcagggcatcaccagaatt 269 ||| ||||| || ||||||||||||| ||| |||| || |||||||||||||| ||||| Sbjct: 53151 caagtttggtactatacttaatgatcctgacttggcaccgttcagggcatcaccggaatt 53092 Query: 270 taaggaacttcaagaggagg 289 |||||||||||||| |||| Sbjct: 53091 caaggaacttcaagaagagg 53072 Score = 97.6 bits (49), Expect = 4e-17 Identities = 88/101 (87%) Strand = Plus / Minus Query: 48 ggtgaaggacgcacttgaacaatttgacaaggccctagagctgaatccaaatcctaccga 107 ||||||||| || |||||||||||||| || |||||||||||||||||||||||| || Sbjct: 53399 ggtgaaggatgctcttgaacaatttgagaatgccctagagctgaatccaaatcctgttga 53340 Query: 108 agcccaagcagcgttctataacaaggcatgctgccatgcat 148 |||||||||||| | || || || |||||||||||||||| Sbjct: 53339 agcccaagcagcactatacaataaagcatgctgccatgcat 53299 Score = 93.7 bits (47), Expect = 6e-16 Identities = 77/87 (88%) Strand = Plus / Minus Query: 519 aggtattgttgtgctcgtggctttatttgtctgggaaaacaagaaagaagaagagcagat 578 |||||||||||||||||||||||| | | |||||||||||||||||||||| ||||||| Sbjct: 51467 aggtattgttgtgctcgtggctttgtatttctgggaaaacaagaaagaagagcagcagat 51408 Query: 579 tacaaatatctctcgtaatgaaaccct 605 ||| | || ||||| ||||||||||| Sbjct: 51407 cacacaaatttctcgcaatgaaaccct 51381 Score = 79.8 bits (40), Expect = 1e-11 Identities = 49/52 (94%) Strand = Plus / Minus Query: 1 gcggagtcgtgcgtcaacctcggcctcgagttcttctccaagggcagggtga 52 |||||||||||||||||||| || |||||| ||||||||||||||||||||| Sbjct: 55069 gcggagtcgtgcgtcaacctgggactcgagctcttctccaagggcagggtga 55018
>ref|NM_100172.2| Arabidopsis thaliana unknown protein AT1G02910 mRNA, complete cds Length = 1557 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 463 ggtgatggtgctccagattttctggaaacggctgggaatgctgccattaatattggaggt 522 ||||||||||||||| || |||||||||| | || |||||||| ||||| ||||||||| Sbjct: 708 ggtgatggtgctccaaatcttctggaaactacgggaaatgctgcaattaacattggaggt 767 Query: 523 attgttgt 530 |||||||| Sbjct: 768 attgttgt 775
>emb|BX815720.1|CNS0ADV7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS88ZA05 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1574 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 463 ggtgatggtgctccagattttctggaaacggctgggaatgctgccattaatattggaggt 522 ||||||||||||||| || |||||||||| | || |||||||| ||||| ||||||||| Sbjct: 725 ggtgatggtgctccaaatcttctggaaactacgggaaatgctgcaattaacattggaggt 784 Query: 523 attgttgt 530 |||||||| Sbjct: 785 attgttgt 792
>emb|BX813549.1|CNS0ADM3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB23ZG01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1514 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 463 ggtgatggtgctccagattttctggaaacggctgggaatgctgccattaatattggaggt 522 ||||||||||||||| || |||||||||| | || |||||||| ||||| ||||||||| Sbjct: 696 ggtgatggtgctccaaatcttctggaaactacgggaaatgctgcaattaacattggaggt 755 Query: 523 attgttgt 530 |||||||| Sbjct: 756 attgttgt 763
>gb|AC009525.3| Arabidopsis thaliana chromosome I BAC F22D16 genomic sequence, complete sequence Length = 100239 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 463 ggtgatggtgctccagattttctggaaacggctgggaatgctgccattaatattggaggt 522 ||||||||||||||| || |||||||||| | || |||||||| ||||| ||||||||| Sbjct: 35593 ggtgatggtgctccaaatcttctggaaactacgggaaatgctgcaattaacattggaggt 35652
>emb|BX816140.1|CNS0ADB7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH30ZC04 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1492 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 463 ggtgatggtgctccagattttctggaaacggctgggaatgctgccattaatattggag 520 ||||||||||||||| || |||||||||| | || |||||||| ||||| ||||||| Sbjct: 672 ggtgatggtgctccaaatcttctggaaactacgggaaatgctgcaattaacattggag 729
>emb|AL359313.11| Human DNA sequence from clone RP1-321C2 on chromosome 6 Contains part of novel gene, complete sequence Length = 52461 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 566 aagaagagcagattacaaatat 587 |||||||||||||||||||||| Sbjct: 22746 aagaagagcagattacaaatat 22767
>gb|AY744675.1| Homo sapiens matrix metalloproteinase 10 (stromelysin 2) (MMP10) gene, complete cds Length = 13828 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 539 ctttatttgtctgggaaaacaagaaagaa 567 ||||||||| ||| ||||||||||||||| Sbjct: 1101 ctttatttggctgagaaaacaagaaagaa 1129
>gb|AC124439.4| Mus musculus BAC clone RP24-261N14 from chromosome 9, complete sequence Length = 162530 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 448 cttgcacttcaaggtggtgat 468 ||||||||||||||||||||| Sbjct: 60272 cttgcacttcaaggtggtgat 60292
>emb|AL451136.11| Human DNA sequence from clone RP11-291L19 on chromosome 1 Contains the 5' end of the TESK2 gene for testis-specific kinase 2, a peptidylprolyl isomerase A (cyclophilin A) (PPIA) pseudogene, a novel gene, a novel gene (DKFZP564I122) and the 3' end of the PRDX1 gene for peroxiredoxin 1, complete sequence Length = 137143 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 146 catacagggaagaaagcaaaaaagc 170 |||||||||||||||||| |||||| Sbjct: 102678 catacagggaagaaagcataaaagc 102702
>ref|XM_500221.1| Yarrowia lipolytica CLIB122, YALI0A18898g predicted mRNA Length = 1407 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 12 cgtcaacctcggcctcgagttcttc 36 ||||||||||||||||| ||||||| Sbjct: 1030 cgtcaacctcggcctcgggttcttc 1006
>gb|AF525010.1| Acacia galpinii psbA gene, partial sequence; psbA-trnH intergenic spacer, complete sequence; and tRNA-His (trnH) gene, partial sequence; chloroplast genes for chloroplast products Length = 487 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 415 atttcaacattctttaccatt 435 ||||||||||||||||||||| Sbjct: 186 atttcaacattctttaccatt 206
>gb|AF524971.1| Enterolobium contortisiliquum psbA gene, partial sequence; psbA-trnH intergenic spacer, complete sequence; and tRNA-His (trnH) gene, partial sequence; chloroplast genes for chloroplast products Length = 483 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 415 atttcaacattctttaccatt 435 ||||||||||||||||||||| Sbjct: 187 atttcaacattctttaccatt 207
>gb|AF524970.1| Ebenopsis ebano psbA gene, partial sequence; psbA-trnH intergenic spacer, complete sequence; and tRNA-His (trnH) gene, partial sequence; chloroplast genes for chloroplast products Length = 454 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 415 atttcaacattctttaccatt 435 ||||||||||||||||||||| Sbjct: 186 atttcaacattctttaccatt 206
>emb|Z99111.2|BSUB0008 Bacillus subtilis complete genome (section 8 of 21): from 1410943 to 1602922 Length = 191980 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 556 aacaagaaagaagaagagcagatta 580 ||||||||| ||||||||||||||| Sbjct: 101500 aacaagaaaaaagaagagcagatta 101524
>emb|AL596169.1| Listeria innocua Clip11262 complete genome, segment 7/12 Length = 239050 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 195 gcgagattacaatctcaaatt 215 ||||||||||||||||||||| Sbjct: 179238 gcgagattacaatctcaaatt 179258
>emb|CR931738.1| Medicago truncatula chromosome 5 clone mth2-56k10, COMPLETE SEQUENCE Length = 132450 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 416 tttcaacattctttaccattc 436 ||||||||||||||||||||| Sbjct: 98223 tttcaacattctttaccattc 98203
>gb|AF012285.1|AF012285 Bacillus subtilis mobA-nprE gene region Length = 46864 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 556 aacaagaaagaagaagagcagatta 580 ||||||||| ||||||||||||||| Sbjct: 18238 aacaagaaaaaagaagagcagatta 18262
>gb|AC131072.13| Mus musculus chromosome 1, clone RP23-396F21, complete sequence Length = 192542 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 484 ctggaaacggctgggaatgct 504 ||||||||||||||||||||| Sbjct: 108998 ctggaaacggctgggaatgct 108978
>dbj|AP000647.5| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-75I23, complete sequence Length = 118818 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 539 ctttatttgtctgggaaaacaagaaagaa 567 ||||||||| ||| ||||||||||||||| Sbjct: 82252 ctttatttggctgagaaaacaagaaagaa 82224
>dbj|AP000619.5| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-42C6, complete sequence Length = 103181 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 539 ctttatttgtctgggaaaacaagaaagaa 567 ||||||||| ||| ||||||||||||||| Sbjct: 33030 ctttatttggctgagaaaacaagaaagaa 33002
>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica Length = 2303261 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 12 cgtcaacctcggcctcgagttcttc 36 ||||||||||||||||| ||||||| Sbjct: 2033742 cgtcaacctcggcctcgggttcttc 2033718
>gb|AC154044.2| Drosophila melanogaster clone BACR32E02, complete sequence Length = 186002 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 561 gaaagaagaagagcagatta 580 |||||||||||||||||||| Sbjct: 64689 gaaagaagaagagcagatta 64708
>gb|BC094614.1| Mus musculus profilin family, member 4, mRNA (cDNA clone IMAGE:6852241), with apparent retained intron Length = 4800 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 546 tgtctgggaaaacaagaaagaagaagag 573 ||||| ||||||||| |||||||||||| Sbjct: 2925 tgtctcggaaaacaaaaaagaagaagag 2952
>gb|AC079274.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-142L8, complete sequence Length = 113724 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 571 gagcagattacaaatatctc 590 |||||||||||||||||||| Sbjct: 98663 gagcagattacaaatatctc 98682
>gb|AC044804.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-15K8, complete sequence Length = 253000 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 571 gagcagattacaaatatctc 590 |||||||||||||||||||| Sbjct: 6173 gagcagattacaaatatctc 6192
>gb|CP000233.1| Lactobacillus salivarius subsp. salivarius UCC118, complete genome Length = 1827111 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 414 aatttcaacattctttacca 433 |||||||||||||||||||| Sbjct: 1620363 aatttcaacattctttacca 1620344
>gb|AC139886.3| Mus musculus BAC clone RP23-120M10 from chromosome 15, complete sequence Length = 211336 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 551 gggaaaacaagaaagaagaa 570 |||||||||||||||||||| Sbjct: 190564 gggaaaacaagaaagaagaa 190583
>gb|AC124381.4| Mus musculus BAC clone RP24-406E24 from chromosome 15, complete sequence Length = 176561 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 551 gggaaaacaagaaagaagaa 570 |||||||||||||||||||| Sbjct: 14730 gggaaaacaagaaagaagaa 14749
>gb|AC127323.3| Mus musculus BAC clone RP23-242D19 from 18, complete sequence Length = 208152 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 470 gtgctccagattttctggaa 489 |||||||||||||||||||| Sbjct: 150919 gtgctccagattttctggaa 150900
>emb|AL354853.12| Human DNA sequence from clone RP11-555F9 on chromosome 9q22.1-22.33 Contains the 5' end of a novel gene and the 3' end of a novel gene, complete sequence Length = 176422 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 472 gctccagattttctggaaac 491 |||||||||||||||||||| Sbjct: 42405 gctccagattttctggaaac 42386
>emb|Z98254.1|DMC114E2 Drosophila melanogaster cosmid 114E2 Length = 37467 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 561 gaaagaagaagagcagatta 580 |||||||||||||||||||| Sbjct: 27973 gaaagaagaagagcagatta 27992
>gb|AC087222.21| Homo sapiens chromosome 17, clone RP11-497H17, complete sequence Length = 70000 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 563 aagaagaagagcagattaca 582 |||||||||||||||||||| Sbjct: 60996 aagaagaagagcagattaca 60977
>gb|AC130371.4| Homo sapiens chromosome 17, clone RP11-1197K16, complete sequence Length = 195613 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 563 aagaagaagagcagattaca 582 |||||||||||||||||||| Sbjct: 189864 aagaagaagagcagattaca 189883
>dbj|AP003453.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0480C01 Length = 151100 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 tcttttatgtggcgttcatt 402 |||||||||||||||||||| Sbjct: 118499 tcttttatgtggcgttcatt 118480
>gb|AE003428.4| Drosophila melanogaster chromosome X, section 12 of 74 of the complete sequence Length = 203546 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 561 gaaagaagaagagcagatta 580 |||||||||||||||||||| Sbjct: 115241 gaaagaagaagagcagatta 115222
>gb|AF052173.1|AF052173 Homo sapiens clone 24417 mRNA sequence Length = 1545 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 563 aagaagaagagcagattaca 582 |||||||||||||||||||| Sbjct: 1071 aagaagaagagcagattaca 1052
>gb|S48551.1|S48551 {tandem repeat P1 monomer} [Cacatua goffini=goffins cockatoo, Genomic, 195 nt] Length = 195 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 552 ggaaaacaagaaagaagaag 571 |||||||||||||||||||| Sbjct: 14 ggaaaacaagaaagaagaag 33 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,295,932 Number of Sequences: 3902068 Number of extensions: 6295932 Number of successful extensions: 134348 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 134189 Number of HSP's gapped (non-prelim): 159 length of query: 605 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 582 effective length of database: 17,143,297,704 effective search space: 9977399263728 effective search space used: 9977399263728 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)