ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal29p14 |
|---|---|
| Clone Library Name | barley_pub |
>IF2_YERPS (Q66F60) Translation initiation factor IF-2| Length = 892 Score = 33.1 bits (74), Expect = 0.57 Identities = 25/97 (25%), Positives = 42/97 (43%) Frame = +3 Query: 105 VEEVGRKKVNHGDVYVLKLYSKLDQTKKGEIACATPGEAQKWTEAFEQAKQQAEYDLTRG 284 VEE R+KV V + K+ +G KW E + + A+Y +T Sbjct: 187 VEEETRRKVEEDAKRVAEEARKMAAENEG-----------KWPEPVAEQTESADYHVTTS 235 Query: 285 VNWKRLQSENEFNLDGHRPRVRRGLGKLVRIGKGPEM 395 + + + EN+ ++G R RG GK + KG ++ Sbjct: 236 QHARAAEDENDAKVEGDRRSRTRG-GKATKQKKGNKL 271
>IF2_YERPE (Q8ZBC2) Translation initiation factor IF-2| Length = 892 Score = 33.1 bits (74), Expect = 0.57 Identities = 25/97 (25%), Positives = 42/97 (43%) Frame = +3 Query: 105 VEEVGRKKVNHGDVYVLKLYSKLDQTKKGEIACATPGEAQKWTEAFEQAKQQAEYDLTRG 284 VEE R+KV V + K+ +G KW E + + A+Y +T Sbjct: 187 VEEETRRKVEEDAKRVAEEARKMAAENEG-----------KWPEPVAEQTESADYHVTTS 235 Query: 285 VNWKRLQSENEFNLDGHRPRVRRGLGKLVRIGKGPEM 395 + + + EN+ ++G R RG GK + KG ++ Sbjct: 236 QHARAAEDENDAKVEGDRRSRTRG-GKATKQKKGNKL 271
>PLSB_PHAVU (Q43822) Glycerol-3-phosphate acyltransferase, chloroplast| precursor (EC 2.3.1.15) (GPAT) Length = 461 Score = 32.7 bits (73), Expect = 0.74 Identities = 30/82 (36%), Positives = 40/82 (48%), Gaps = 15/82 (18%) Frame = -1 Query: 208 VAHAISPFFV*SN---LLYN------FKT*TSPWLTFLRPTSSTTRVGLTKPFRIGSSPG 56 VAHAI PF SN LL + F T T+P +T L TSS++ ++ R ++P Sbjct: 11 VAHAIPPFLRLSNKTMLLLSTPPTTFFPTSTTPRVTLLSSTSSSSSSSIS--LRSSTAPS 68 Query: 55 LSCGS------RLYMATHLPPS 8 SC S L A H PP+ Sbjct: 69 PSCSSVTPKDNCLASAKHSPPN 90
>CT055_HUMAN (Q9BQ89) Protein C20orf55| Length = 295 Score = 31.6 bits (70), Expect = 1.7 Identities = 26/91 (28%), Positives = 36/91 (39%) Frame = +3 Query: 201 CATPGEAQKWTEAFEQAKQQAEYDLTRGVNWKRLQSENEFNLDGHRPRVRRGLGKLVRIG 380 C +PG A + A Q+++ DL+ + E FN G P RGL Sbjct: 167 CPSPGPAAASSPARPPGLQRSKSDLSERFSRAAADLERFFNFCGLDPEEARGL------- 219 Query: 381 KGPEMLLRQSSDLQSHERVNTNFGGDTGRCT 473 G L R SSD+ S + G G C+ Sbjct: 220 -GVAHLARASSDIVSLAGPSAGPGSSEGGCS 249
>DMPK_HUMAN (Q09013) Myotonin-protein kinase (EC 2.7.11.1) (Myotonic dystrophy| protein kinase) (MDPK) (DM-kinase) (DMK) (DMPK) (MT-PK) Length = 639 Score = 31.2 bits (69), Expect = 2.2 Identities = 17/47 (36%), Positives = 25/47 (53%) Frame = +3 Query: 63 LEPIRKGFVSPTLVVEEVGRKKVNHGDVYVLKLYSKLDQTKKGEIAC 203 L+ I +G S VV K G VY +K+ +K D K+GE++C Sbjct: 84 LKVIGRGAFSEVAVV-----KMKQTGQVYAMKIMNKWDMLKRGEVSC 125
>DMPK_MOUSE (P54265) Myotonin-protein kinase (EC 2.7.11.1) (Myotonic dystrophy| protein kinase) (MDPK) (DM-kinase) (DMK) (DMPK) (MT-PK) Length = 631 Score = 31.2 bits (69), Expect = 2.2 Identities = 17/47 (36%), Positives = 25/47 (53%) Frame = +3 Query: 63 LEPIRKGFVSPTLVVEEVGRKKVNHGDVYVLKLYSKLDQTKKGEIAC 203 L+ I +G S VV K G VY +K+ +K D K+GE++C Sbjct: 74 LKVIGRGAFSEVAVV-----KMKQTGQVYAMKIMNKWDMLKRGEVSC 115
>YHJV_ECOLI (P37660) Inner membrane transport protein yhjV| Length = 423 Score = 30.4 bits (67), Expect = 3.7 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -3 Query: 434 PFMALKIG-----GLSKEHFWSFANAHKFPQASSYPRSMSIKIKLVF 309 P + +K+G G + W+FAN FPQAS + R + + I F Sbjct: 165 PMVVVKVGIIVVFGFAMIPHWNFANITAFPQASVFFRDVLLTIPFCF 211
>MAC1_SCHPO (Q10268) Membrane-anchored protein 1 precursor| Length = 756 Score = 30.0 bits (66), Expect = 4.8 Identities = 14/40 (35%), Positives = 23/40 (57%) Frame = +1 Query: 199 HVQLLVKLRNGPKHLSRLNNRLSMT*QEGLTGKDCRVKTS 318 + Q+ + LRNGP++ SR N+ + Q G+ G + TS Sbjct: 605 NAQIPMNLRNGPRNASRSNSSTDLFGQSGIPGNSRGMPTS 644
>CAC1B_HUMAN (Q00975) Voltage-dependent N-type calcium channel alpha-1B subunit| (Voltage-gated calcium channel alpha subunit Cav2.2) (Calcium channel, L type, alpha-1 polypeptide isoform 5) (Brain calcium channel III) (BIII) Length = 2339 Score = 29.6 bits (65), Expect = 6.3 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 3/56 (5%) Frame = -2 Query: 294 SS*PLLSGHTQPVV*PAQMLRSISELHQE---LHMQSLLSSFDPICCTTSRHKHPR 136 +S P L+ TQPV + M RSIS L Q H+ S P +S H H R Sbjct: 2000 ASMPRLAAETQPVTDASPMKRSISTLAQRPRGTHLCSTTPDRPPPSQASSHHHHHR 2055
>FADD_MOUSE (Q61160) FADD protein (FAS-associating death domain-containing| protein) (Mediator of receptor induced toxicity) Length = 205 Score = 29.6 bits (65), Expect = 6.3 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 6/78 (7%) Frame = +3 Query: 159 LYSKLDQTKKGEIACATPGEAQKWTEAFEQAKQQAEYDL---TRGVNWKRLQSE---NEF 320 L +LD + G A PGEA Q +D+ G +WKRL E +E Sbjct: 75 LLQRLDDFEAGTATAAPPGEAD----------LQVAFDIVCDNVGRDWKRLARELKVSEA 124 Query: 321 NLDGHRPRVRRGLGKLVR 374 +DG + R L + VR Sbjct: 125 KMDGIEEKYPRSLSERVR 142
>IF2_SALTY (Q9ZF31) Translation initiation factor IF-2| Length = 892 Score = 29.6 bits (65), Expect = 6.3 Identities = 13/45 (28%), Positives = 24/45 (53%) Frame = +3 Query: 216 EAQKWTEAFEQAKQQAEYDLTRGVNWKRLQSENEFNLDGHRPRVR 350 E KWT E + ++Y +T + ++ + EN+ ++G R R R Sbjct: 213 EENKWTATPEPVEDTSDYHVTTSQHARQAEDENDREVEGGRGRGR 257
>IF2_SALTI (Q8Z3H7) Translation initiation factor IF-2| Length = 892 Score = 29.6 bits (65), Expect = 6.3 Identities = 13/45 (28%), Positives = 24/45 (53%) Frame = +3 Query: 216 EAQKWTEAFEQAKQQAEYDLTRGVNWKRLQSENEFNLDGHRPRVR 350 E KWT E + ++Y +T + ++ + EN+ ++G R R R Sbjct: 213 EENKWTATPEPVEDTSDYHVTTSQHARQAEDENDREVEGGRGRGR 257
>IF2_SALPA (Q5PLB0) Translation initiation factor IF-2| Length = 892 Score = 29.6 bits (65), Expect = 6.3 Identities = 13/45 (28%), Positives = 24/45 (53%) Frame = +3 Query: 216 EAQKWTEAFEQAKQQAEYDLTRGVNWKRLQSENEFNLDGHRPRVR 350 E KWT E + ++Y +T + ++ + EN+ ++G R R R Sbjct: 213 EENKWTATPEPVEDTSDYHVTTSQHARQAEDENDREVEGGRGRGR 257
>IF2_SALCH (Q57JH9) Translation initiation factor IF-2| Length = 892 Score = 29.6 bits (65), Expect = 6.3 Identities = 13/45 (28%), Positives = 24/45 (53%) Frame = +3 Query: 216 EAQKWTEAFEQAKQQAEYDLTRGVNWKRLQSENEFNLDGHRPRVR 350 E KWT E + ++Y +T + ++ + EN+ ++G R R R Sbjct: 213 EENKWTATPEPVEDTSDYHVTTSQHARQAEDENDREVEGGRGRGR 257
>KRAF1_CAEEL (Q07292) Raf homolog serine/threonine-protein kinase (EC 2.7.11.1)| (Abnormal cell lineage protein 45) Length = 813 Score = 29.6 bits (65), Expect = 6.3 Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 6/46 (13%) Frame = +2 Query: 20 VRRHVQARPARQPGTRTYPK------GFCQSHSCGGGGWSQKGQPR 139 + R QA P P T YPK HS GG G S K P+ Sbjct: 36 IDRKDQASPMASPSTPLYPKHSDSLHSLSGHHSAGGAGTSDKEPPK 81
>ABCI_SCHPO (Q92338) Protein ABC1 homolog, mitochondrial precursor| Length = 610 Score = 29.3 bits (64), Expect = 8.2 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%) Frame = +1 Query: 178 KRRKERLHVQLLVKLRNGP-KHLSRLNNRLSMT*QEGLTGKDCR 306 KR LHVQLL K RNG KH S++ + GL+ KD + Sbjct: 46 KRSTSDLHVQLLEKYRNGKVKHASQIK-------ELGLSSKDTK 82
>VH65_NPVAC (Q08539) Early 65 kDa protein| Length = 553 Score = 29.3 bits (64), Expect = 8.2 Identities = 19/42 (45%), Positives = 25/42 (59%) Frame = +3 Query: 141 DVYVLKLYSKLDQTKKGEIACATPGEAQKWTEAFEQAKQQAE 266 +V +LKLY KL Q +GE Q+WTE F+Q KQQ + Sbjct: 204 NVKLLKLYVKLMQ--RGEYQ-------QEWTEYFQQWKQQLQ 236
>IF2_KLEOX (Q9ZF28) Translation initiation factor IF-2| Length = 896 Score = 29.3 bits (64), Expect = 8.2 Identities = 12/43 (27%), Positives = 25/43 (58%) Frame = +3 Query: 222 QKWTEAFEQAKQQAEYDLTRGVNWKRLQSENEFNLDGHRPRVR 350 + WTEA E ++ +Y +T + ++ + +N+ ++G R R R Sbjct: 217 KNWTEAPETPEETTDYHVTTSQHARQAEDDNDREVEGGRGRGR 259 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 89,005,544 Number of Sequences: 219361 Number of extensions: 1919847 Number of successful extensions: 5572 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 5321 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5568 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4757699440 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
