Clone Information

BLAST Search Result

Clone Name	baal29p14
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_482599.1\| Oryza sativa (japonica cultivar-group), mRNA	268	2e-68
2	dbj\|AK067282.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	268	2e-68
3	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	84	6e-13
4	dbj\|AP005159.3\| Oryza sativa (japonica cultivar-group) genomic D...	84	6e-13
5	dbj\|AP004702.3\| Oryza sativa (japonica cultivar-group) genomic D...	84	6e-13
6	ref\|NM_122909.2\| Arabidopsis thaliana unknown protein AT5G35180 ...	46	0.13
7	gb\|AF436836.1\|AF436836 Arabidopsis thaliana AT5g35180/T25C13_60 ...	46	0.13
8	gb\|AF416331.1\| Ruegeria sp. PR1b plasmid pSD25, complete sequence	44	0.50
9	gb\|AF003383.1\| Caenorhabditis elegans cosmid ZC250, complete seq...	42	2.0
10	gb\|AC048351.18\| Homo sapiens 3 BAC RP11-175P19 (Roswell Park Can...	42	2.0
11	gb\|AC165437.5\| Mus musculus chromosome 15, clone RP23-285N11, co...	42	2.0
12	gb\|AC165418.6\| Mus musculus chromosome 7, clone RP23-148M16, com...	40	7.8
13	ref\|XM_450981.1\| Oryza sativa (japonica cultivar-group), mRNA	40	7.8
14	gb\|AE014850.1\| Plasmodium falciparum 3D7 chromosome 12, section ...	40	7.8
15	gb\|AC147174.2\| Xenopus tropicalis clone CH216-51H8, complete seq...	40	7.8
16	gb\|AC148454.2\| Xenopus tropicalis clone CH216-161F9, complete se...	40	7.8
17	gb\|AC182652.2\| Populus trichocarpa clone Pop1-120B14, complete s...	40	7.8
18	gb\|AC147206.2\| Xenopus tropicalis clone CH216-39C21, complete se...	40	7.8
19	gb\|CP000233.1\| Lactobacillus salivarius subsp. salivarius UCC118...	40	7.8
20	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	40	7.8
21	gb\|AC147170.3\| Xenopus tropicalis clone CH216-154J22, complete s...	40	7.8
22	gb\|AC183669.3\| Pan troglodytes BAC clone CH251-549L23 from chrom...	40	7.8
23	gb\|AC123045.2\| Mus musculus BAC clone RP24-549E10 from chromosom...	40	7.8
24	gb\|AC123687.20\| Mus musculus chromosome 5, clone RP23-314A12, co...	40	7.8
25	ref\|XM_789771.1\| PREDICTED: Strongylocentrotus purpuratus simila...	40	7.8
26	emb\|BX511081.8\| Zebrafish DNA sequence from clone DKEY-6B12 in l...	40	7.8
27	emb\|BX546473.10\| Zebrafish DNA sequence from clone DKEYP-51F2 in...	40	7.8
28	gb\|AF230499.1\| Oryza sativa subsp. japonica serine/threonine pro...	40	7.8
29	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.8
30	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.8
31	gb\|AC084319.5\|AC084319 Oryza sativa chromosome 3 BAC OSJNBa0004B...	40	7.8
32	gb\|AC004470.2\| Homo sapiens X BAC GS1-433O24 (Genome Systems Hum...	40	7.8
33	gb\|AC127286.3\| Mus musculus BAC clone RP23-340I4 from chromosome...	40	7.8
34	dbj\|AP005573.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.8
35	dbj\|AP005555.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	7.8
36	gb\|AC008015.5\|AC008015 Homo sapiens chromosome 14 BAC 98L12, com...	40	7.8
37	dbj\|AK071360.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	7.8
38	emb\|BX539328.4\| Mouse DNA sequence from clone RP23-108I21 on chr...	40	7.8
39	gb\|AC110537.19\| Mus musculus chromosome 5, clone RP23-44A4, comp...	40	7.8
40	gb\|AC149091.3\| Mus musculus BAC clone RP23-49P22 from 7, complet...	40	7.8
41	gb\|AC131692.5\| Mus musculus BAC clone RP23-391B20 from 19, compl...	40	7.8
42	gb\|AC167544.9\| Mus musculus chromosome 7, clone RP24-255K20, com...	40	7.8
43	emb\|AL928575.7\| Mouse DNA sequence from clone RP23-37A11 on chro...	40	7.8

>ref|XM_482599.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2292

 Score =  268 bits (135), Expect = 2e-68
 Identities = 344/413 (83%), Gaps = 13/413 (3%)
 Strand = Plus / Plus

                                                                       
Query: 171 ttggatcaaacgaagaaaggagagattgcatgtgcaactcctggtgaagctcagaaatgg 230
           ||||||||||| ||||||||||||||||||||||     || |||||||||  |||||||
Sbjct: 379 ttggatcaaacaaagaaaggagagattgcatgtggggaccccggtgaagctaggaaatgg 438

                                                                       
Query: 231 accgaagcatttgagcaggctaaacaacaggctgagtatgacctga---caagaggggtt 287
              ||||||||||||||||| ||||| |||||||| ||||||||||   | |||||||||
Sbjct: 439 gttgaagcatttgagcaggcaaaacagcaggctgattatgacctgatgacgagaggggtt 498

                                                                       
Query: 288 aactggaaaagattgcagagtgaaaacgagtttaatcttgatggacatcgacctcgggta 347
           |  ||||| ||||  |||| |||||||||| ||||||||||||| |||||||| || |||
Sbjct: 499 agttggaatagatcccagaatgaaaacgagcttaatcttgatgggcatcgaccacgtgta 558

                                                                       
Query: 348 agaaga---------ggcttggggaaacttgtgcgcattggcaaaggaccagaaatgctc 398
           || |||         ||||||||||||||||| || ||||| ||||| ||||||| ||||
Sbjct: 559 aggagatatgcacaaggcttggggaaacttgtacgaattggtaaagggccagaaaagctc 618

                                                                       
Query: 399 cttcgacagtcctccgatcttcaaagccatgaaagggttaacacaaactttggaggtgat 458
            | || ||||| ||  |||||||||||||||| |   |||| |||||||||||||| |||
Sbjct: 619 ttgcggcagtcttcaaatcttcaaagccatgagataattaatacaaactttggaggcgat 678

                                                                       
Query: 459 actgggagatgcacttgaagcacatgaatggagatttgttcgaacattaaatggaattag 518
            |||| ||||||| | |||||||| |||||||||| |||||||||||| ||||| || ||
Sbjct: 679 tctgg-agatgcattcgaagcacacgaatggagatatgttcgaacatttaatggtataag 737

                                                                
Query: 519 aatttttgaagatattgcaaactcaaagggtggaaaggggatacttctcaagt 571
           |||||||||||||||||||||| ||||||||||||| ||| ||||||| ||||
Sbjct: 738 aatttttgaagatattgcaaacacaaagggtggaaaaggggtacttcttaagt 790



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 84/96 (87%)
 Strand = Plus / Plus

                                                                       
Query: 27  gccatgtacaagcgcgacccgcacgacaacccgggactcgaacctatccgaaagggtttt 86
           |||||||||||||||||||||  | | ||||| ||| || ||||||||||||||||| ||
Sbjct: 235 gccatgtacaagcgcgacccgagcaagaaccccggaatccaacctatccgaaagggtgtt 294

                                               
Query: 87  gtcagtcccactcttgtggtggaggaggttggtcgc 122
           || |||| ||||||| ||||||||||| ||||||||
Sbjct: 295 gtaagtcacactcttatggtggaggagcttggtcgc 330

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>dbj|AK067282.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102K12, full
           insert sequence
          Length = 2575

 Score =  268 bits (135), Expect = 2e-68
 Identities = 344/413 (83%), Gaps = 13/413 (3%)
 Strand = Plus / Plus

                                                                       
Query: 171 ttggatcaaacgaagaaaggagagattgcatgtgcaactcctggtgaagctcagaaatgg 230
           ||||||||||| ||||||||||||||||||||||     || |||||||||  |||||||
Sbjct: 428 ttggatcaaacaaagaaaggagagattgcatgtggggaccccggtgaagctaggaaatgg 487

                                                                       
Query: 231 accgaagcatttgagcaggctaaacaacaggctgagtatgacctga---caagaggggtt 287
              ||||||||||||||||| ||||| |||||||| ||||||||||   | |||||||||
Sbjct: 488 gttgaagcatttgagcaggcaaaacagcaggctgattatgacctgatgacgagaggggtt 547

                                                                       
Query: 288 aactggaaaagattgcagagtgaaaacgagtttaatcttgatggacatcgacctcgggta 347
           |  ||||| ||||  |||| |||||||||| ||||||||||||| |||||||| || |||
Sbjct: 548 agttggaatagatcccagaatgaaaacgagcttaatcttgatgggcatcgaccacgtgta 607

                                                                       
Query: 348 agaaga---------ggcttggggaaacttgtgcgcattggcaaaggaccagaaatgctc 398
           || |||         ||||||||||||||||| || ||||| ||||| ||||||| ||||
Sbjct: 608 aggagatatgcacaaggcttggggaaacttgtacgaattggtaaagggccagaaaagctc 667

                                                                       
Query: 399 cttcgacagtcctccgatcttcaaagccatgaaagggttaacacaaactttggaggtgat 458
            | || ||||| ||  |||||||||||||||| |   |||| |||||||||||||| |||
Sbjct: 668 ttgcggcagtcttcaaatcttcaaagccatgagataattaatacaaactttggaggcgat 727

                                                                       
Query: 459 actgggagatgcacttgaagcacatgaatggagatttgttcgaacattaaatggaattag 518
            |||| ||||||| | |||||||| |||||||||| |||||||||||| ||||| || ||
Sbjct: 728 tctgg-agatgcattcgaagcacacgaatggagatatgttcgaacatttaatggtataag 786

                                                                
Query: 519 aatttttgaagatattgcaaactcaaagggtggaaaggggatacttctcaagt 571
           |||||||||||||||||||||| ||||||||||||| ||| ||||||| ||||
Sbjct: 787 aatttttgaagatattgcaaacacaaagggtggaaaaggggtacttcttaagt 839



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 84/96 (87%)
 Strand = Plus / Plus

                                                                       
Query: 27  gccatgtacaagcgcgacccgcacgacaacccgggactcgaacctatccgaaagggtttt 86
           |||||||||||||||||||||  | | ||||| ||| || ||||||||||||||||| ||
Sbjct: 284 gccatgtacaagcgcgacccgagcaagaaccccggaatccaacctatccgaaagggtgtt 343

                                               
Query: 87  gtcagtcccactcttgtggtggaggaggttggtcgc 122
           || |||| ||||||| ||||||||||| ||||||||
Sbjct: 344 gtaagtcacactcttatggtggaggagcttggtcgc 379

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 85/98 (86%), Gaps = 1/98 (1%)
 Strand = Plus / Plus

                                                                            
Query: 415      atcttcaaagccatgaaagggttaacacaaactttggaggtgatactgggagatgcactt 474
                |||||||||||||||| |   |||| |||||||||||||| ||| |||| ||||||| | 
Sbjct: 21334183 atcttcaaagccatgagataattaatacaaactttggaggcgattctgg-agatgcattc 21334241

                                                      
Query: 475      gaagcacatgaatggagatttgttcgaacattaaatgg 512
                |||||||| |||||||||| |||||||||||| |||||
Sbjct: 21334242 gaagcacacgaatggagatatgttcgaacatttaatgg 21334279



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Plus

                                                                        
Query: 67       aacctatccgaaagggttttgtcagtcccactcttgtggtggaggaggttggtcgc 122
                ||||||||||||||||| |||| |||| ||||||| ||||||||||| ||||||||
Sbjct: 21331686 aacctatccgaaagggtgttgtaagtcacactcttatggtggaggagcttggtcgc 21331741



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                               
Query: 517      agaatttttgaagatattgcaaactcaaagg 547
                |||||||||||||||||||||||| ||||||
Sbjct: 21334896 agaatttttgaagatattgcaaacacaaagg 21334926



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                 
Query: 353      aggcttggggaaacttgtgcgcattggcaaagg 385
                |||||||||||||||||| || ||||| |||||
Sbjct: 21333429 aggcttggggaaacttgtacgaattggtaaagg 21333461



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                                 
Query: 213      ggtgaagctcagaaatggaccgaagcatttgagcaggctaaacaacagg 261
                |||||||||  |||||||   ||||||||||||||||| ||||| ||||
Sbjct: 21332083 ggtgaagctaggaaatgggttgaagcatttgagcaggcaaaacagcagg 21332131



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 27       gccatgtacaagcgcgacccg 47
                |||||||||||||||||||||
Sbjct: 21330680 gccatgtacaagcgcgacccg 21330700



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 55/66 (83%), Gaps = 3/66 (4%)
 Strand = Plus / Plus

                                                                            
Query: 256      aacaggctgagtatgacctga---caagaggggttaactggaaaagattgcagagtgaaa 312
                |||||||||| ||||||||||   | ||||||||||  ||||| ||||  |||| |||||
Sbjct: 21333211 aacaggctgattatgacctgatgacgagaggggttagttggaatagatcccagaatgaaa 21333270

                      
Query: 313      acgagt 318
                ||||||
Sbjct: 21333271 acgagt 21333276



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 171      ttggatcaaacgaagaaaggagag 194
                ||||||||||| ||||||||||||
Sbjct: 21331955 ttggatcaaacaaagaaaggagag 21331978

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>dbj|AP005159.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0016C11
          Length = 170723

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 85/98 (86%), Gaps = 1/98 (1%)
 Strand = Plus / Plus

                                                                          
Query: 415    atcttcaaagccatgaaagggttaacacaaactttggaggtgatactgggagatgcactt 474
              |||||||||||||||| |   |||| |||||||||||||| ||| |||| ||||||| | 
Sbjct: 160460 atcttcaaagccatgagataattaatacaaactttggaggcgattctgg-agatgcattc 160518

                                                    
Query: 475    gaagcacatgaatggagatttgttcgaacattaaatgg 512
              |||||||| |||||||||| |||||||||||| |||||
Sbjct: 160519 gaagcacacgaatggagatatgttcgaacatttaatgg 160556



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Plus

                                                                      
Query: 67     aacctatccgaaagggttttgtcagtcccactcttgtggtggaggaggttggtcgc 122
              ||||||||||||||||| |||| |||| ||||||| ||||||||||| ||||||||
Sbjct: 157963 aacctatccgaaagggtgttgtaagtcacactcttatggtggaggagcttggtcgc 158018



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                             
Query: 517    agaatttttgaagatattgcaaactcaaagg 547
              |||||||||||||||||||||||| ||||||
Sbjct: 161173 agaatttttgaagatattgcaaacacaaagg 161203



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                               
Query: 353    aggcttggggaaacttgtgcgcattggcaaagg 385
              |||||||||||||||||| || ||||| |||||
Sbjct: 159706 aggcttggggaaacttgtacgaattggtaaagg 159738



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                               
Query: 213    ggtgaagctcagaaatggaccgaagcatttgagcaggctaaacaacagg 261
              |||||||||  |||||||   ||||||||||||||||| ||||| ||||
Sbjct: 158360 ggtgaagctaggaaatgggttgaagcatttgagcaggcaaaacagcagg 158408



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 27     gccatgtacaagcgcgacccg 47
              |||||||||||||||||||||
Sbjct: 156957 gccatgtacaagcgcgacccg 156977



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 55/66 (83%), Gaps = 3/66 (4%)
 Strand = Plus / Plus

                                                                          
Query: 256    aacaggctgagtatgacctga---caagaggggttaactggaaaagattgcagagtgaaa 312
              |||||||||| ||||||||||   | ||||||||||  ||||| ||||  |||| |||||
Sbjct: 159488 aacaggctgattatgacctgatgacgagaggggttagttggaatagatcccagaatgaaa 159547

                    
Query: 313    acgagt 318
              ||||||
Sbjct: 159548 acgagt 159553



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 171    ttggatcaaacgaagaaaggagag 194
              ||||||||||| ||||||||||||
Sbjct: 158232 ttggatcaaacaaagaaaggagag 158255

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>dbj|AP004702.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0524F03
          Length = 167696

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 85/98 (86%), Gaps = 1/98 (1%)
 Strand = Plus / Plus

                                                                         
Query: 415   atcttcaaagccatgaaagggttaacacaaactttggaggtgatactgggagatgcactt 474
             |||||||||||||||| |   |||| |||||||||||||| ||| |||| ||||||| | 
Sbjct: 34108 atcttcaaagccatgagataattaatacaaactttggaggcgattctgg-agatgcattc 34166

                                                   
Query: 475   gaagcacatgaatggagatttgttcgaacattaaatgg 512
             |||||||| |||||||||| |||||||||||| |||||
Sbjct: 34167 gaagcacacgaatggagatatgttcgaacatttaatgg 34204



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Plus

                                                                     
Query: 67    aacctatccgaaagggttttgtcagtcccactcttgtggtggaggaggttggtcgc 122
             ||||||||||||||||| |||| |||| ||||||| ||||||||||| ||||||||
Sbjct: 31611 aacctatccgaaagggtgttgtaagtcacactcttatggtggaggagcttggtcgc 31666



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                            
Query: 517   agaatttttgaagatattgcaaactcaaagg 547
             |||||||||||||||||||||||| ||||||
Sbjct: 34821 agaatttttgaagatattgcaaacacaaagg 34851



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 353   aggcttggggaaacttgtgcgcattggcaaagg 385
             |||||||||||||||||| || ||||| |||||
Sbjct: 33354 aggcttggggaaacttgtacgaattggtaaagg 33386



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                              
Query: 213   ggtgaagctcagaaatggaccgaagcatttgagcaggctaaacaacagg 261
             |||||||||  |||||||   ||||||||||||||||| ||||| ||||
Sbjct: 32008 ggtgaagctaggaaatgggttgaagcatttgagcaggcaaaacagcagg 32056



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 27    gccatgtacaagcgcgacccg 47
             |||||||||||||||||||||
Sbjct: 30605 gccatgtacaagcgcgacccg 30625



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 55/66 (83%), Gaps = 3/66 (4%)
 Strand = Plus / Plus

                                                                         
Query: 256   aacaggctgagtatgacctga---caagaggggttaactggaaaagattgcagagtgaaa 312
             |||||||||| ||||||||||   | ||||||||||  ||||| ||||  |||| |||||
Sbjct: 33136 aacaggctgattatgacctgatgacgagaggggttagttggaatagatcccagaatgaaa 33195

                   
Query: 313   acgagt 318
             ||||||
Sbjct: 33196 acgagt 33201



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 171   ttggatcaaacgaagaaaggagag 194
             ||||||||||| ||||||||||||
Sbjct: 31880 ttggatcaaacaaagaaaggagag 31903

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>ref|NM_122909.2| Arabidopsis thaliana unknown protein AT5G35180 mRNA, complete cds
          Length = 2688

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 65/79 (82%)
 Strand = Plus / Plus

                                                                       
Query: 463 ggagatgcacttgaagcacatgaatggagatttgttcgaacattaaatggaattagaatt 522
           ||||||||| | || ||||| ||||||| || |||||| ||| | |||||  |||| |||
Sbjct: 838 ggagatgcaatcgaggcacacgaatggaaatgtgttcgtacaatcaatggtgttaggatt 897

                              
Query: 523 tttgaagatattgcaaact 541
           ||||||||| |||| ||||
Sbjct: 898 tttgaagatgttgctaact 916

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>gb|AF436836.1|AF436836 Arabidopsis thaliana AT5g35180/T25C13_60 mRNA, complete cds
          Length = 2643

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 65/79 (82%)
 Strand = Plus / Plus

                                                                       
Query: 463 ggagatgcacttgaagcacatgaatggagatttgttcgaacattaaatggaattagaatt 522
           ||||||||| | || ||||| ||||||| || |||||| ||| | |||||  |||| |||
Sbjct: 793 ggagatgcaatcgaggcacacgaatggaaatgtgttcgtacaatcaatggtgttaggatt 852

                              
Query: 523 tttgaagatattgcaaact 541
           ||||||||| |||| ||||
Sbjct: 853 tttgaagatgttgctaact 871

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>gb|AF416331.1| Ruegeria sp. PR1b plasmid pSD25, complete sequence
          Length = 148650

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 217   aagctcagaaatggaccgaagc 238
             ||||||||||||||||||||||
Sbjct: 21332 aagctcagaaatggaccgaagc 21311

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>gb|AF003383.1| Caenorhabditis elegans cosmid ZC250, complete sequence
          Length = 34372

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 425   ccatgaaagggttaacacaaa 445
             |||||||||||||||||||||
Sbjct: 12168 ccatgaaagggttaacacaaa 12188

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>gb|AC048351.18| Homo sapiens 3 BAC RP11-175P19 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 161687

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 211   ctggtgaagctcagaaatgga 231
             |||||||||||||||||||||
Sbjct: 92599 ctggtgaagctcagaaatgga 92579

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>gb|AC165437.5| Mus musculus chromosome 15, clone RP23-285N11, complete sequence
          Length = 228289

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 519    aatttttgaagatattgcaaa 539
              |||||||||||||||||||||
Sbjct: 111325 aatttttgaagatattgcaaa 111345

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>gb|AC165418.6| Mus musculus chromosome 7, clone RP23-148M16, complete sequence
          Length = 205525

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 415    atcttcaaagccatgaaagg 434
              ||||||||||||||||||||
Sbjct: 146810 atcttcaaagccatgaaagg 146791

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>ref|XM_450981.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2396

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 474  tgaagcacatgaatggagat 493
            ||||||||||||||||||||
Sbjct: 1604 tgaagcacatgaatggagat 1585

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>gb|AE014850.1| Plasmodium falciparum 3D7 chromosome 12, section 7 of 9 of the complete
             sequence
          Length = 250713

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 507   aaatggaattagaatttttgaagatatt 534
             ||||| |||||||||| |||||||||||
Sbjct: 35785 aaatgaaattagaattcttgaagatatt 35758

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>gb|AC147174.2| Xenopus tropicalis clone CH216-51H8, complete sequence
          Length = 191184

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 506   taaatggaattagaatttttgaag 529
             |||||||||||||| |||||||||
Sbjct: 54933 taaatggaattagagtttttgaag 54910

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>gb|AC148454.2| Xenopus tropicalis clone CH216-161F9, complete sequence
          Length = 186914

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 506   taaatggaattagaatttttgaag 529
             |||||||||||||| |||||||||
Sbjct: 52663 taaatggaattagagtttttgaag 52640

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>gb|AC182652.2| Populus trichocarpa clone Pop1-120B14, complete sequence
          Length = 103155

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 504   attaaatggaattagaattt 523
             ||||||||||||||||||||
Sbjct: 94198 attaaatggaattagaattt 94217

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>gb|AC147206.2| Xenopus tropicalis clone CH216-39C21, complete sequence
          Length = 167795

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 506   taaatggaattagaatttttgaag 529
             |||||||||||||| |||||||||
Sbjct: 93515 taaatggaattagagtttttgaag 93492

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>gb|CP000233.1| Lactobacillus salivarius subsp. salivarius UCC118, complete genome
          Length = 1827111

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 506     taaatggaattagaattttt 525
               ||||||||||||||||||||
Sbjct: 1122779 taaatggaattagaattttt 1122760

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 265      agtatgacctgacaagaggg 284
                ||||||||||||||||||||
Sbjct: 20395857 agtatgacctgacaagaggg 20395838

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>gb|AC147170.3| Xenopus tropicalis clone CH216-154J22, complete sequence
          Length = 163973

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 506   taaatggaattagaatttttgaag 529
             |||||||||||||| |||||||||
Sbjct: 95852 taaatggaattagagtttttgaag 95829

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>gb|AC183669.3| Pan troglodytes BAC clone CH251-549L23 from chromosome 19, complete
             sequence
          Length = 139061

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 185   gaaaggagagattgcatgtgcaac 208
             ||||||||||||| ||||||||||
Sbjct: 91084 gaaaggagagattccatgtgcaac 91107

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>gb|AC123045.2| Mus musculus BAC clone RP24-549E10 from chromosome 7, complete sequence
          Length = 142457

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 415    atcttcaaagccatgaaagg 434
              ||||||||||||||||||||
Sbjct: 104295 atcttcaaagccatgaaagg 104314

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>gb|AC123687.20| Mus musculus chromosome 5, clone RP23-314A12, complete sequence
          Length = 189230

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 415   atcttcaaagccatgaaagg 434
             ||||||||||||||||||||
Sbjct: 17777 atcttcaaagccatgaaagg 17758

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>ref|XM_789771.1| PREDICTED: Strongylocentrotus purpuratus similar to Protein KIAA1219
            (LOC590156), mRNA
          Length = 2289

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 419  tcaaagccatgaaagggtta 438
            ||||||||||||||||||||
Sbjct: 1031 tcaaagccatgaaagggtta 1050

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>emb|BX511081.8| Zebrafish DNA sequence from clone DKEY-6B12 in linkage group 21, complete
              sequence
          Length = 210246

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 527    aagatattgcaaactcaaag 546
              ||||||||||||||||||||
Sbjct: 195197 aagatattgcaaactcaaag 195216

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>emb|BX546473.10| Zebrafish DNA sequence from clone DKEYP-51F2 in linkage group 3, complete
              sequence
          Length = 211253

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 546    gggtggaaaggggatacttc 565
              ||||||||||||||||||||
Sbjct: 163417 gggtggaaaggggatacttc 163398

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>gb|AF230499.1| Oryza sativa subsp. japonica serine/threonine protein kinase (YK10)
           gene, partial cds
          Length = 532

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 474 tgaagcacatgaatggagat 493
           ||||||||||||||||||||
Sbjct: 320 tgaagcacatgaatggagat 301

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 474      tgaagcacatgaatggagat 493
                ||||||||||||||||||||
Sbjct: 17948661 tgaagcacatgaatggagat 17948680

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 265      agtatgacctgacaagaggg 284
                ||||||||||||||||||||
Sbjct: 20388886 agtatgacctgacaagaggg 20388867

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>gb|AC084319.5|AC084319 Oryza sativa chromosome 3 BAC OSJNBa0004B24 genomic sequence, complete
             sequence
          Length = 152883

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 265   agtatgacctgacaagaggg 284
             ||||||||||||||||||||
Sbjct: 40157 agtatgacctgacaagaggg 40138

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>gb|AC004470.2| Homo sapiens X BAC GS1-433O24 (Genome Systems Human BAC Library)
             complete sequence
          Length = 206809

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 510   tggaattagaatttttgaagatat 533
             |||||||||||| |||||||||||
Sbjct: 87987 tggaattagaatctttgaagatat 87964

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>gb|AC127286.3| Mus musculus BAC clone RP23-340I4 from chromosome unknown, complete
             sequence
          Length = 190953

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 518   gaatttttgaagatattgcaaact 541
             ||||||||||||| ||||||||||
Sbjct: 74609 gaatttttgaagacattgcaaact 74586

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>dbj|AP005573.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9,
           BAC clone:OJ1509_C06
          Length = 113436

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 474 tgaagcacatgaatggagat 493
           ||||||||||||||||||||
Sbjct: 315 tgaagcacatgaatggagat 334

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>dbj|AP005555.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1118_B06
          Length = 106678

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 474   tgaagcacatgaatggagat 493
             ||||||||||||||||||||
Sbjct: 99480 tgaagcacatgaatggagat 99499

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>gb|AC008015.5|AC008015 Homo sapiens chromosome 14 BAC 98L12, complete sequence
          Length = 165057

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 542    caaagggtggaaaggggata 561
              ||||||||||||||||||||
Sbjct: 101059 caaagggtggaaaggggata 101078

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>dbj|AK071360.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023090B05, full
            insert sequence
          Length = 2453

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 474  tgaagcacatgaatggagat 493
            ||||||||||||||||||||
Sbjct: 1661 tgaagcacatgaatggagat 1642

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>emb|BX539328.4| Mouse DNA sequence from clone RP23-108I21 on chromosome X, complete
              sequence
          Length = 113887

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 518    gaatttttgaagatattgcaaact 541
              ||||||||||||| ||||||||||
Sbjct: 102395 gaatttttgaagacattgcaaact 102418

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>gb|AC110537.19| Mus musculus chromosome 5, clone RP23-44A4, complete sequence
          Length = 208136

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 415    atcttcaaagccatgaaagg 434
              ||||||||||||||||||||
Sbjct: 170465 atcttcaaagccatgaaagg 170446

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>gb|AC149091.3| Mus musculus BAC clone RP23-49P22 from 7, complete sequence
          Length = 240997

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 415   atcttcaaagccatgaaagg 434
             ||||||||||||||||||||
Sbjct: 64773 atcttcaaagccatgaaagg 64792

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>gb|AC131692.5| Mus musculus BAC clone RP23-391B20 from 19, complete sequence
          Length = 236246

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 506    taaatggaattagaattttt 525
              ||||||||||||||||||||
Sbjct: 141736 taaatggaattagaattttt 141717

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>gb|AC167544.9| Mus musculus chromosome 7, clone RP24-255K20, complete sequence
          Length = 155048

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 415    atcttcaaagccatgaaagg 434
              ||||||||||||||||||||
Sbjct: 141057 atcttcaaagccatgaaagg 141076

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>emb|AL928575.7| Mouse DNA sequence from clone RP23-37A11 on chromosome 2, complete
              sequence
          Length = 167375

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 512    gaattagaatttttgaagatattg 535
              |||||||||| |||||||||||||
Sbjct: 149118 gaattagaatatttgaagatattg 149095


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,882,175
Number of Sequences: 3902068
Number of extensions: 4882175
Number of successful extensions: 91054
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90813
Number of HSP's gapped (non-prelim): 234
length of query: 571
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 548
effective length of database: 17,143,297,704
effective search space: 9394527141792
effective search space used: 9394527141792
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result