>IFRD2_HUMAN (Q12894) Interferon-related developmental regulator 2 (SKMC15|
           protein)
          Length = 442

 Score = 33.9 bits (76), Expect = 0.35
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +1

Query: 406 LDKYIDALYEKRGSTREAALASLVDAFESFMLDGLVENKYATLLSLFNTSIKKG 567
           L +Y+D L +K   TR+ AL SL  A  S +L   +  +  TL       +KKG
Sbjct: 77  LKEYVDCLTDKSAKTRQGALESLRLALASRLLPDFLLERRLTLADALEKCLKKG 130

>IFRD1_PIG (Q5S1U6) Interferon-related developmental regulator 1|
          Length = 450

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = +1

Query: 397 EFVLDKYIDALYEKRGSTREAALASLVDAFESFMLDGLVENKYATLLSLFNTSIKKG 567
           E+ L   ID   +K   TR+AAL  + +A  S ML   +  +  TL       +KKG
Sbjct: 80  EYKLKGLIDLTLDKSAKTRQAALEGIKNALASRMLYEFILERRMTLTDSIERCLKKG 136

>IFRD1_HUMAN (O00458) Interferon-related developmental regulator 1 (Nerve growth|
           factor-inducible protein PC4)
          Length = 451

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = +1

Query: 397 EFVLDKYIDALYEKRGSTREAALASLVDAFESFMLDGLVENKYATLLSLFNTSIKKG 567
           E+ L   ID   +K   TR+AAL  + +A  S ML   +  +  TL       +KKG
Sbjct: 81  EYKLKGLIDLTLDKSAKTRQAALEGIKNALASKMLYEFILERRMTLTDSIERCLKKG 137

>IFRD1_RAT (P20695) Interferon-related developmental regulator 1 (Nerve growth|
           factor-inducible protein PC4) (IRPR)
          Length = 449

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = +1

Query: 397 EFVLDKYIDALYEKRGSTREAALASLVDAFESFMLDGLVENKYATLLSLFNTSIKKG 567
           E+ L   ID   +K   TR+AAL  + +A  S +L   V  +  TL       +KKG
Sbjct: 79  EYKLKGLIDLTLDKSAKTRQAALEGVKNALSSKVLYEFVLERRMTLTDSIERCLKKG 135

>IFRD1_MOUSE (P19182) Interferon-related developmental regulator 1 (Nerve growth|
           factor-inducible protein PC4) (TPA-induced sequence 7)
           (TIS7 protein)
          Length = 449

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = +1

Query: 397 EFVLDKYIDALYEKRGSTREAALASLVDAFESFMLDGLVENKYATLLSLFNTSIKKG 567
           E+ L   ID   +K   TR+AAL  + +A  S +L   V  +  TL       +KKG
Sbjct: 79  EYKLKGLIDLTLDKSAKTRQAALEGVKNALSSKVLYEFVLERRMTLTDSIERCLKKG 135

>GP156_HUMAN (Q8NFN8) Probable G-protein coupled receptor 156 (GABAB-related|
           G-protein coupled receptor) (G-protein coupled receptor
           PGR28)
          Length = 814

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -2

Query: 244 RPGSRKPESRNGRESQQEGTSGAAQAAAQRESVRGQDTAHAEHQSGAG 101
           RP SRKP   +  + +     G+ Q+  + E  RG   A     SG+G
Sbjct: 656 RPSSRKPSLPSDPQDRPGTLEGSKQSQTEPEGARGSKAAFLRQPSGSG 703

>BSC5_YEAST (P53755) Bypass of stop codon protein 5|
          Length = 489

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -1

Query: 572 IDPFLIEVLNRLSRVAYLFSTRPSSIKLSKASTNEANAASLVDPL 438
           ++ F IE+ NRL  +  +FS    +I + K    EAN +  + PL
Sbjct: 423 LEDFDIEIANRLGMIEKVFSKIERAIPIHKEDIQEANRSDQLSPL 467

>HORN_HUMAN (Q86YZ3) Hornerin|
          Length = 2850

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -2

Query: 259  SPWRGRPGSRKPESRNGRESQQEGTSGAAQAAAQRESVRGQDTAHAEHQSGAG 101
            SP RGR GS    S +    Q    SG + +    ES  G  +   +H+SG+G
Sbjct: 2182 SPSRGRHGSGSGHSSS--HGQHGSGSGRSSSRGPYESRSGHSSVFGQHESGSG 2232



 Score = 30.0 bits (66), Expect = 5.0
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = -2

Query: 268  SYSSPWRGRPGSRKPESRNGRESQQEGTSGAAQAAAQRESVRGQDTAHAEHQSGAG 101
            S  SP RGR GS    S +    Q    SG + +    ES  G  +   +H+SG+G
Sbjct: 1709 SGQSPSRGRHGSGLGHSSS--HGQHGSGSGRSSSRGPYESRSGHSSVFGQHESGSG 1762



 Score = 29.6 bits (65), Expect = 6.5
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = -2

Query: 268  SYSSPWRGRPGSRKPESRNGRESQQEGTSGAAQAAAQRESVRGQDTAHAEHQSGAG 101
            S  SP RGR GS    S +    Q    SG + +    ES  G  +   +H+SG+G
Sbjct: 2649 SGQSPSRGRHGSGLGHSSS--HGQHGSGSGRSSSRGPYESRLGHSSVFGQHESGSG 2702



 Score = 29.6 bits (65), Expect = 6.5
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -2

Query: 259  SPWRGRPGSRKPESRNGRESQQEGTSGAAQAAAQRESVRGQDTAHAEHQSGAG 101
            SP RGR GS    S +    Q    SG + +    ES  G  +   +H+SG+G
Sbjct: 1242 SPSRGRHGSGLGHSSS--HGQHGSGSGRSSSRGPYESRSGHSSVFGQHESGSG 1292

>CBP1_CAEEL (P34545) Protein cbp-1|
          Length = 2056

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = -2

Query: 256 PWRGRPGSRKPESRNGRESQQEGTSGAAQAAA--QRESVRGQDTAHAEHQSGAG 101
           P  G+PG +   +++  + QQ      AQAAA  Q++  R Q+ A A  ++GAG
Sbjct: 332 PPNGQPGPQAAAAQHAAQ-QQAAAQAQAQAAAQQQQQQQREQEAAAAAQRNGAG 384

>ZSWM5_HUMAN (Q9P217) Zinc finger SWIM domain-containing protein 5|
          Length = 1185

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 25/70 (35%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
 Frame = -2

Query: 265 YSS-PWRGRPGSRKPESRNGRESQQEGTSGAAQAAAQRESVRGQDTAHAEHQSGAGAGGI 89
           YSS  +RG PG+       G    +EG      AAA   S  G   A A    GAGAG  
Sbjct: 112 YSSFQYRGGPGAGAAGGAAGASPAEEGPQPPPGAAAPAGSAPGGVAAGASPGLGAGAGAA 171

Query: 88  EMRGARLRTR 59
              G  L  R
Sbjct: 172 GCGGEGLPFR 181

>U2AF1_DROME (Q94535) Splicing factor U2af 38 kDa subunit (U2 auxiliary factor|
           38 kDa subunit) (U2 snRNP auxiliary factor small
           subunit)
          Length = 264

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 12/70 (17%)
 Frame = -2

Query: 265 YSSPWRGRPGSRKPESRNGRESQQ-----------EGTSGAAQAAAQRESVRGQDTAH-A 122
           YS   R R  SR P  R G  S+            +G  G      +R+++RG D  +  
Sbjct: 188 YSRRRRARSRSRSPGRRRGSRSRSRSPGRRGGGRGDGVGGGNYLNNERDNMRGNDRGNDR 247

Query: 121 EHQSGAGAGG 92
           + + G G GG
Sbjct: 248 DRRKGGGGGG 257

>T2_MOUSE (Q06666) Octapeptide-repeat protein T2|
          Length = 185

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
 Frame = -2

Query: 250 RGRPGSRKPESRNGRESQQE-----GTSGAAQAAAQRESVRGQDTAHAEHQSGAGAG 95
           RGR   R+ E + GRE++++     G     +A  QR   R +    AE Q G   G
Sbjct: 21  RGREAERQRERQRGREAERQRGRERGREAEREAERQRGRERQRGRGEAERQRGRERG 77

>VE6_HPV94 (Q705D2) Protein E6|
          Length = 148

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 504 IKHKTFESINQRSQRCLSCRPPLLVESVD 418
           ++ +T ESIN +  RC +C  PL+ E  D
Sbjct: 87  VEEETKESINTQQIRCYTCHKPLVKEEKD 115

>FILA_HUMAN (P20930) Filaggrin|
          Length = 4061

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = -2

Query: 250  RGRPGSRKPESRNGRESQQEGTSGAAQAAAQRESVRGQDTAHAEHQSGAGA 98
            R   GS + +SR+G  + +      A      ES R   T HAE  SG  A
Sbjct: 1616 RNHYGSAREQSRHGSRNPRSHQEDRASHGHSAESSRQSGTRHAETSSGGQA 1666

>VNCS_AEDEV (P27454) Noncapsid protein NS-1 (Nonstructural protein NS1) (NCVP1)|
          Length = 849

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 13/40 (32%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = -3

Query: 525 IFVLNKTIKHKTFE-SINQRSQRCLSCRPPLLVESVDVLV 409
           +++L K+I+H+  + +IN + Q  L  RPP L+E + + +
Sbjct: 733 LYILKKSIQHRDDKYTINAQIQNKLISRPPTLIEPIHMAI 772

>CF150_HUMAN (Q8N884) Protein C6orf150|
          Length = 522

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = -2

Query: 244 RPGSRKPESRNGRESQQEGTSGAAQAAAQRESVRGQDTAHAEHQSGAGAGGIEMRGAR 71
           + GSR+ +S    ++Q+     A  A A++   R QDT  ++  S  GA G+E   AR
Sbjct: 56  KSGSRQKKS--APDTQERPPVRATGARAKKAPQRAQDTQPSDATSAPGAEGLEPPAAR 111

>PAWR_RAT (Q62627) PRKC apoptosis WT1 regulator protein (Prostate apoptosis|
           response-4 protein) (Par-4) (Transcriptional repressor
           Par-4-like protein PAWR)
          Length = 332

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
 Frame = -2

Query: 250 RGRPGSRKPESRNGRESQQEGTSGAAQAAAQRESVRGQDTAHAEHQSGA-----GAGGIE 86
           RG PGSR+P      E +    +GAA A A R      D+A  + +S       G G IE
Sbjct: 91  RGAPGSRRP------EDECPIAAGAAGAPASRGDEEEPDSAPEKGRSSGPSARKGKGQIE 144

Query: 85  MRGARLRTR 59
            R  R + R
Sbjct: 145 KRKLREKRR 153

>H1X_HUMAN (Q92522) Histone H1x|
          Length = 213

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = -2

Query: 250 RGRPGSRKPESRNGRESQQEGTSGAAQAAAQRESVRGQDTAHAEHQSGAGA 98
           RG P +    +    ++++     A    A ++  RGQ      H+ GAGA
Sbjct: 128 RGAPAAATAPAPTAHKAKKAAPGAAGSRRADKKPARGQKPEQRSHKKGAGA 178


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,983,375
Number of Sequences: 219361
Number of extensions: 702112
Number of successful extensions: 3355
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3337
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4929664480
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)