Clone Information

BLAST Search Result

Clone Name	baal29m08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_471148.1\| Oryza sativa (japonica cultivar-group), predic...	638	e-180
2	dbj\|AK120404.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	638	e-180
3	dbj\|AK071986.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	638	e-180
4	gb\|AY104615.1\| Zea mays PCO111783 mRNA sequence	597	e-167
5	emb\|AL662964.3\|OSJN00161 Oryza sativa genomic DNA, chromosome 4,...	228	2e-56
6	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	228	2e-56
7	gb\|AC114011.5\| Oryza sativa (japonica cultivar-group) chromosome...	46	0.15
8	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	46	0.15
9	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	46	0.15
10	gb\|AY734899.1\| Rhagoletis pomonella clone PS15 microsatellite se...	44	0.57
11	gb\|AC010214.7\|AC010214 Drosophila melanogaster, chromosome 2L, r...	44	0.57
12	gb\|AE003639.3\| Drosophila melanogaster chromosome 2L, section 48...	44	0.57
13	gb\|CP000001.1\| Bacillus cereus E33L, complete genome	42	2.3
14	emb\|AL161587.2\|ATCHRIV83 Arabidopsis thaliana DNA chromosome 4, ...	42	2.3
15	emb\|AL022604.1\|ATF23E12 Arabidopsis thaliana DNA chromosome 4, B...	42	2.3
16	emb\|CR932802.1\| Mus musculus chromosome 2, clone GenSys-198F12 s...	42	2.3
17	emb\|BX571892.9\| Mouse DNA sequence from clone RP23-207B21 on chr...	42	2.3
18	gb\|AE017194.1\| Bacillus cereus ATCC 10987, complete genome	42	2.3
19	ref\|XM_954804.1\| Neurospora crassa OR74A hypothetical protein (N...	40	9.0
20	ref\|XM_331028.1\| Neurospora crassa OR74A hypothetical protein (N...	40	9.0
21	gb\|AC122339.3\| Mus musculus BAC clone RP23-353L10 from chromosom...	40	9.0
22	emb\|AL121998.7\|HSJ1103B4 Human DNA sequence from clone RP5-1103B...	40	9.0
23	emb\|BX908789.1\| Neurospora crassa DNA linkage group VII BAC clon...	40	9.0
24	emb\|BX897700.1\| Bartonella quintana str. Toulouse, complete genome	40	9.0
25	gb\|AC025477.6\| Homo sapiens chromosome 5 clone RP11-432A10, comp...	40	9.0
26	gb\|AC105763.5\| Homo sapiens BAC clone RP11-698H21 from 4, comple...	40	9.0
27	gb\|AC079160.5\| Homo sapiens BAC clone RP11-176K15 from 4, comple...	40	9.0
28	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.0
29	gb\|AC156831.2\| Mus musculus BAC clone RP24-276N6 from chromosome...	40	9.0
30	gb\|AC092134.4\| Homo sapiens chromosome 16 clone RP11-264M12, com...	40	9.0
31	gb\|AC011231.7\| Homo sapiens BAC clone RP11-13K3 from 2, complete...	40	9.0
32	dbj\|AP003917.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.0
33	ref\|XM_314353.2\| Anopheles gambiae str. PEST ENSANGP00000012686 ...	40	9.0
34	gb\|AC010077.1\|AC010077 Homo sapiens chromosome 19, cosmid R28278...	40	9.0
35	dbj\|AP001697.1\| Homo sapiens genomic DNA, chromosome 21q, sectio...	40	9.0
36	emb\|AJ891074.1\| Oryzorictes hova partial adrab2 gene for alpha 2...	40	9.0
37	emb\|AJ891072.1\| Microgale brevicaudata partial adrab2 gene for a...	40	9.0
38	emb\|AJ891069.1\| Limnogale mergulus partial adrab2 gene for alpha...	40	9.0
39	emb\|AL928911.7\| Mouse DNA sequence from clone RP23-271N3 on chro...	40	9.0
40	emb\|AL731789.9\| Mouse DNA sequence from clone RP23-52F6 on chrom...	40	9.0
41	dbj\|AP001598.1\| Homo sapiens genomic DNA, chromosome 21, clone:K...	40	9.0

>ref|XM_471148.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3084

 Score =  638 bits (322), Expect = e-180
 Identities = 565/644 (87%), Gaps = 4/644 (0%)
 Strand = Plus / Plus

                                                                        
Query: 14   gtggtacatcctctcgcagnaagcacctgatggggaggaagtgccagtcgtcaactttgg 73
            ||||||||||||||||||| || |||||||||||||||   | || ||  ||||||||||
Sbjct: 1009 gtggtacatcctctcgcag-aatcacctgatggggagg---ttccggttatcaactttgg 1064

                                                                        
Query: 74   gtcggccggcgtaatccgctgccgaagatgcaggacatatataaatccttatgcaacatt 133
            ||| || || || ||||| ||||||||||| || ||||||||||| ||||| ||||||||
Sbjct: 1065 gtcagctggtgtcatccgttgccgaagatgtagaacatatataaacccttacgcaacatt 1124

                                                                        
Query: 134  tgcagatgctggaaggaaatggcgctgcaatctctgcacattgctcaatgatgttcctgg 193
             || ||||||||||||||||||||||||||||| |||||  |||||||||||||||||||
Sbjct: 1125 cgcggatgctggaaggaaatggcgctgcaatctttgcacgctgctcaatgatgttcctgg 1184

                                                                        
Query: 194  tgagtacttttgtggtcttgatgctagtggcagaagatttgatacagatcaaagaccaga 253
             ||||| ||||||||  |||||| ||| |||||||||| |||| ||||||||||||| ||
Sbjct: 1185 agagtatttttgtggcattgatggtagcggcagaagatatgatgcagatcaaagacctga 1244

                                                                        
Query: 254  actttctaagggaacagtggagtttgttgctcctactgaatatatggtcaggccaccaat 313
             ||||||||||||||||| |||||||||||||| ||||||||||||||  ||||||||||
Sbjct: 1245 gctttctaagggaacagtagagtttgttgctcccactgaatatatggtgcggccaccaat 1304

                                                                        
Query: 314  gccgccttcctatttctttcttattgatgtctcagtatctgcagttcgaagtgggctgct 373
            ||| || ||||||||||||||||||||||| || ||||||||||||||||| ||||||||
Sbjct: 1305 gccaccctcctatttctttcttattgatgtgtccgtatctgcagttcgaagcgggctgct 1364

                                                                        
Query: 374  cgaggtagttgcgaagaccatcaagtcatgtcttgatgatcttctaggctttccacggac 433
             ||||| ||||| ||||||||||| ||||| |||||||| || | ||| |||||||| ||
Sbjct: 1365 tgaggttgttgcaaagaccatcaaatcatgccttgatgacctcccagggtttccacgaac 1424

                                                                        
Query: 434  acaaattggattcttaacctttgatagcacattacacttccacaatttcaagtcttctct 493
            ||| |||||||||||||| |||||||||||||| ||||| || ||||||||||| ||| |
Sbjct: 1425 acagattggattcttaacttttgatagcacattgcactttcataatttcaagtcgtcttt 1484

                                                                        
Query: 494  gagtcagcctcaaatgatggtggttgccgacttggacgatgttttcctgccattgcctga 553
            |   || ||||||||||||||||| || || ||||| |||||||||||||| ||||||||
Sbjct: 1485 gtcacaacctcaaatgatggtggtcgctgatttggatgatgttttcctgccgttgcctga 1544

                                                                        
Query: 554  cgatctcttggttaatttggtcgattctagacatgttatcgagtctttcctcgataactt 613
             || ||||||||||||||||| || |||||||||||| |||| || || ||||||| |||
Sbjct: 1545 tgacctcttggttaatttggttgactctagacatgttgtcgattcatttctcgatagctt 1604

                                                        
Query: 614  gcccaatatgtttcaggacaatgtaaatgtagaatctgctcttg 657
            ||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 1605 gccaaatatgttccaggacaatgtaaatgtagaatctgctcttg 1648

to top

>dbj|AK120404.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088L21, full
            insert sequence
          Length = 3678

 Score =  638 bits (322), Expect = e-180
 Identities = 565/644 (87%), Gaps = 4/644 (0%)
 Strand = Plus / Plus

                                                                        
Query: 14   gtggtacatcctctcgcagnaagcacctgatggggaggaagtgccagtcgtcaactttgg 73
            ||||||||||||||||||| || |||||||||||||||   | || ||  ||||||||||
Sbjct: 1135 gtggtacatcctctcgcag-aatcacctgatggggagg---ttccggttatcaactttgg 1190

                                                                        
Query: 74   gtcggccggcgtaatccgctgccgaagatgcaggacatatataaatccttatgcaacatt 133
            ||| || || || ||||| ||||||||||| || ||||||||||| ||||| ||||||||
Sbjct: 1191 gtcagctggtgtcatccgttgccgaagatgtagaacatatataaacccttacgcaacatt 1250

                                                                        
Query: 134  tgcagatgctggaaggaaatggcgctgcaatctctgcacattgctcaatgatgttcctgg 193
             || ||||||||||||||||||||||||||||| |||||  |||||||||||||||||||
Sbjct: 1251 cgcggatgctggaaggaaatggcgctgcaatctttgcacgctgctcaatgatgttcctgg 1310

                                                                        
Query: 194  tgagtacttttgtggtcttgatgctagtggcagaagatttgatacagatcaaagaccaga 253
             ||||| ||||||||  |||||| ||| |||||||||| |||| ||||||||||||| ||
Sbjct: 1311 agagtatttttgtggcattgatggtagcggcagaagatatgatgcagatcaaagacctga 1370

                                                                        
Query: 254  actttctaagggaacagtggagtttgttgctcctactgaatatatggtcaggccaccaat 313
             ||||||||||||||||| |||||||||||||| ||||||||||||||  ||||||||||
Sbjct: 1371 gctttctaagggaacagtagagtttgttgctcccactgaatatatggtgcggccaccaat 1430

                                                                        
Query: 314  gccgccttcctatttctttcttattgatgtctcagtatctgcagttcgaagtgggctgct 373
            ||| || ||||||||||||||||||||||| || ||||||||||||||||| ||||||||
Sbjct: 1431 gccaccctcctatttctttcttattgatgtgtccgtatctgcagttcgaagcgggctgct 1490

                                                                        
Query: 374  cgaggtagttgcgaagaccatcaagtcatgtcttgatgatcttctaggctttccacggac 433
             ||||| ||||| ||||||||||| ||||| |||||||| || | ||| |||||||| ||
Sbjct: 1491 tgaggttgttgcaaagaccatcaaatcatgccttgatgacctccaagggtttccacgaac 1550

                                                                        
Query: 434  acaaattggattcttaacctttgatagcacattacacttccacaatttcaagtcttctct 493
            ||| |||||||||||||| |||||||||||||| ||||| || ||||||||||| ||| |
Sbjct: 1551 acagattggattcttaacttttgatagcacattgcactttcataatttcaagtcgtcttt 1610

                                                                        
Query: 494  gagtcagcctcaaatgatggtggttgccgacttggacgatgttttcctgccattgcctga 553
            |   || ||||||||||||||||| || || ||||| |||||||||||||| ||||||||
Sbjct: 1611 gtcacaacctcaaatgatggtggtcgctgatttggatgatgttttcctgccgttgcctga 1670

                                                                        
Query: 554  cgatctcttggttaatttggtcgattctagacatgttatcgagtctttcctcgataactt 613
             || ||||||||||||||||| || |||||||||||| |||| || || ||||||| |||
Sbjct: 1671 tgacctcttggttaatttggttgactctagacatgttgtcgattcatttctcgatagctt 1730

                                                        
Query: 614  gcccaatatgtttcaggacaatgtaaatgtagaatctgctcttg 657
            ||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 1731 gccaaatatgttccaggacaatgtaaatgtagaatctgctcttg 1774

to top

>dbj|AK071986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094J05, full
           insert sequence
          Length = 2007

 Score =  638 bits (322), Expect = e-180
 Identities = 565/644 (87%), Gaps = 4/644 (0%)
 Strand = Plus / Plus

                                                                       
Query: 14  gtggtacatcctctcgcagnaagcacctgatggggaggaagtgccagtcgtcaactttgg 73
           ||||||||||||||||||| || |||||||||||||||   | || ||  ||||||||||
Sbjct: 149 gtggtacatcctctcgcag-aatcacctgatggggagg---ttccggttatcaactttgg 204

                                                                       
Query: 74  gtcggccggcgtaatccgctgccgaagatgcaggacatatataaatccttatgcaacatt 133
           ||| || || || ||||| ||||||||||| || ||||||||||| ||||| ||||||||
Sbjct: 205 gtcagctggtgtcatccgttgccgaagatgtagaacatatataaacccttacgcaacatt 264

                                                                       
Query: 134 tgcagatgctggaaggaaatggcgctgcaatctctgcacattgctcaatgatgttcctgg 193
            || ||||||||||||||||||||||||||||| |||||  |||||||||||||||||||
Sbjct: 265 cgcggatgctggaaggaaatggcgctgcaatctttgcacgctgctcaatgatgttcctgg 324

                                                                       
Query: 194 tgagtacttttgtggtcttgatgctagtggcagaagatttgatacagatcaaagaccaga 253
            ||||| ||||||||  |||||| ||| |||||||||| |||| ||||||||||||| ||
Sbjct: 325 agagtatttttgtggcattgatggtagcggcagaagatatgatgcagatcaaagacctga 384

                                                                       
Query: 254 actttctaagggaacagtggagtttgttgctcctactgaatatatggtcaggccaccaat 313
            ||||||||||||||||| |||||||||||||| ||||||||||||||  ||||||||||
Sbjct: 385 gctttctaagggaacagtagagtttgttgctcccactgaatatatggtgcggccaccaat 444

                                                                       
Query: 314 gccgccttcctatttctttcttattgatgtctcagtatctgcagttcgaagtgggctgct 373
           ||| || ||||||||||||||||||||||| || ||||||||||||||||| ||||||||
Sbjct: 445 gccaccctcctatttctttcttattgatgtgtccgtatctgcagttcgaagcgggctgct 504

                                                                       
Query: 374 cgaggtagttgcgaagaccatcaagtcatgtcttgatgatcttctaggctttccacggac 433
            ||||| ||||| ||||||||||| ||||| |||||||| || | ||| |||||||| ||
Sbjct: 505 tgaggttgttgcaaagaccatcaaatcatgccttgatgacctcccagggtttccacgaac 564

                                                                       
Query: 434 acaaattggattcttaacctttgatagcacattacacttccacaatttcaagtcttctct 493
           ||| |||||||||||||| |||||||||||||| ||||| || ||||||||||| ||| |
Sbjct: 565 acagattggattcttaacttttgatagcacattgcactttcataatttcaagtcgtcttt 624

                                                                       
Query: 494 gagtcagcctcaaatgatggtggttgccgacttggacgatgttttcctgccattgcctga 553
           |   || ||||||||||||||||| || || ||||| |||||||||||||| ||||||||
Sbjct: 625 gtcacaacctcaaatgatggtggtcgctgatttggatgatgttttcctgccgttgcctga 684

                                                                       
Query: 554 cgatctcttggttaatttggtcgattctagacatgttatcgagtctttcctcgataactt 613
            || ||||||||||||||||| || |||||||||||| |||| || || ||||||| |||
Sbjct: 685 tgacctcttggttaatttggttgactctagacatgttgtcgattcatttctcgatagctt 744

                                                       
Query: 614 gcccaatatgtttcaggacaatgtaaatgtagaatctgctcttg 657
           ||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 745 gccaaatatgttccaggacaatgtaaatgtagaatctgctcttg 788

to top

>gb|AY104615.1| Zea mays PCO111783 mRNA sequence
          Length = 2510

 Score =  597 bits (301), Expect = e-167
 Identities = 541/621 (87%)
 Strand = Plus / Plus

                                                                       
Query: 37  cacctgatggggaggaagtgccagtcgtcaactttgggtcggccggcgtaatccgctgcc 96
           ||||||| |||||||||||||||||  ||||||||||||| ||||| || || ||||| |
Sbjct: 16  cacctgacggggaggaagtgccagttatcaactttgggtccgccggtgtcattcgctgtc 75

                                                                       
Query: 97  gaagatgcaggacatatataaatccttatgcaacatttgcagatgctggaaggaaatggc 156
           ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76  gaagatgtaggacgtatataaatccttatgcaacatttgcagatgctggaaggaaatggc 135

                                                                       
Query: 157 gctgcaatctctgcacattgctcaatgatgttcctggtgagtacttttgtggtcttgatg 216
           |||||||||| || |||||||||||||| |||||||| ||||||||||||| ||||||||
Sbjct: 136 gctgcaatctttgtacattgctcaatgacgttcctggagagtacttttgtgctcttgatg 195

                                                                       
Query: 217 ctagtggcagaagatttgatacagatcaaagaccagaactttctaagggaacagtggagt 276
           |||||||||| || |  ||||| ||||||||||| ||||| ||||||||||| || ||||
Sbjct: 196 ctagtggcaggaggtacgatactgatcaaagacctgaactctctaagggaactgtagagt 255

                                                                       
Query: 277 ttgttgctcctactgaatatatggtcaggccaccaatgccgccttcctatttctttctta 336
           |||||||||| || |||||||||||  ||||||| |||||||| ||||||||||||||||
Sbjct: 256 ttgttgctccaacagaatatatggtgcggccaccgatgccgccgtcctatttctttctta 315

                                                                       
Query: 337 ttgatgtctcagtatctgcagttcgaagtgggctgctcgaggtagttgcgaagaccatca 396
           |||| || ||||| |||||||||||||| ||  |||| ||| | ||||| |||||||| |
Sbjct: 316 ttgacgtgtcagtgtctgcagttcgaagcggattgcttgagattgttgcaaagaccataa 375

                                                                       
Query: 397 agtcatgtcttgatgatcttctaggctttccacggacacaaattggattcttaacctttg 456
           | ||||| || ||||| |||| |||||||||||| ||||| |||||||||||||| ||||
Sbjct: 376 aatcatgcctcgatgaacttccaggctttccacgaacacagattggattcttaacatttg 435

                                                                       
Query: 457 atagcacattacacttccacaatttcaagtcttctctgagtcagcctcaaatgatggtgg 516
           | ||||| || || || || || |||||||||||| ||   |||||||||||||||||||
Sbjct: 436 acagcaccttgcattttcataacttcaagtcttctttgtcacagcctcaaatgatggtgg 495

                                                                       
Query: 517 ttgccgacttggacgatgttttcctgccattgcctgacgatctcttggttaatttggtcg 576
           || | || ||||| |||||||| |||||||||||||| || |||||||||||||||||||
Sbjct: 496 ttactgatttggatgatgtttttctgccattgcctgatgacctcttggttaatttggtcg 555

                                                                       
Query: 577 attctagacatgttatcgagtctttcctcgataacttgcccaatatgtttcaggacaatg 636
           | || ||||||||| | || || || || |||| |||||| ||||||||||| |||||||
Sbjct: 556 actcaagacatgttgtggaatcatttcttgatagcttgccaaatatgtttcatgacaatg 615

                                
Query: 637 taaatgtagaatctgctcttg 657
           ||||||| || ||||||||||
Sbjct: 616 taaatgtggagtctgctcttg 636

to top

>emb|AL662964.3|OSJN00161 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027H09,
              complete sequence
          Length = 155672

 Score =  228 bits (115), Expect = 2e-56
 Identities = 175/195 (89%)
 Strand = Plus / Plus

                                                                          
Query: 186    gttcctggtgagtacttttgtggtcttgatgctagtggcagaagatttgatacagatcaa 245
              |||||||| ||||| ||||||||  |||||| ||| |||||||||| |||| ||||||||
Sbjct: 143703 gttcctggagagtatttttgtggcattgatggtagcggcagaagatatgatgcagatcaa 143762

                                                                          
Query: 246    agaccagaactttctaagggaacagtggagtttgttgctcctactgaatatatggtcagg 305
              ||||| || ||||||||||||||||| |||||||||||||| ||||||||||||||  ||
Sbjct: 143763 agacctgagctttctaagggaacagtagagtttgttgctcccactgaatatatggtgcgg 143822

                                                                          
Query: 306    ccaccaatgccgccttcctatttctttcttattgatgtctcagtatctgcagttcgaagt 365
              ||||||||||| || ||||||||||||||||||||||| || ||||||||||||||||| 
Sbjct: 143823 ccaccaatgccaccctcctatttctttcttattgatgtgtccgtatctgcagttcgaagc 143882

                             
Query: 366    gggctgctcgaggta 380
              |||||||| ||||||
Sbjct: 143883 gggctgcttgaggta 143897



 Score =  184 bits (93), Expect = 2e-43
 Identities = 141/157 (89%)
 Strand = Plus / Plus

                                                                          
Query: 501    cctcaaatgatggtggttgccgacttggacgatgttttcctgccattgcctgacgatctc 560
              ||||||||||||||||| || || ||||| |||||||||||||| |||||||| || |||
Sbjct: 144284 cctcaaatgatggtggtcgctgatttggatgatgttttcctgccgttgcctgatgacctc 144343

                                                                          
Query: 561    ttggttaatttggtcgattctagacatgttatcgagtctttcctcgataacttgcccaat 620
              |||||||||||||| || |||||||||||| |||| || || ||||||| |||||| |||
Sbjct: 144344 ttggttaatttggttgactctagacatgttgtcgattcatttctcgatagcttgccaaat 144403

                                                   
Query: 621    atgtttcaggacaatgtaaatgtagaatctgctcttg 657
              ||||| |||||||||||||||||||||||||||||||
Sbjct: 144404 atgttccaggacaatgtaaatgtagaatctgctcttg 144440



 Score =  133 bits (67), Expect = 8e-28
 Identities = 109/123 (88%)
 Strand = Plus / Plus

                                                                          
Query: 64     tcaactttgggtcggccggcgtaatccgctgccgaagatgcaggacatatataaatcctt 123
              ||||||||||||| || || || ||||| ||||||||||| || ||||||||||| ||||
Sbjct: 141711 tcaactttgggtcagctggtgtcatccgttgccgaagatgtagaacatatataaaccctt 141770

                                                                          
Query: 124    atgcaacatttgcagatgctggaaggaaatggcgctgcaatctctgcacattgctcaatg 183
              | |||||||| || ||||||||||||||||||||||||||||| |||||  |||||||||
Sbjct: 141771 acgcaacattcgcggatgctggaaggaaatggcgctgcaatctttgcacgctgctcaatg 141830

                 
Query: 184    atg 186
              |||
Sbjct: 141831 atg 141833



 Score =  107 bits (54), Expect = 5e-20
 Identities = 96/110 (87%)
 Strand = Plus / Plus

                                                                          
Query: 376    aggtagttgcgaagaccatcaagtcatgtcttgatgatcttctaggctttccacggacac 435
              |||| ||||| ||||||||||| ||||| |||||||| || | ||| |||||||| ||||
Sbjct: 144046 aggttgttgcaaagaccatcaaatcatgccttgatgacctcccagggtttccacgaacac 144105

                                                                
Query: 436    aaattggattcttaacctttgatagcacattacacttccacaatttcaag 485
              | |||||||||||||| |||||||||||||| ||||| || |||||||||
Sbjct: 144106 agattggattcttaacttttgatagcacattgcactttcataatttcaag 144155



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 33/35 (94%), Gaps = 1/35 (2%)
 Strand = Plus / Plus

                                                 
Query: 14     gtggtacatcctctcgcagnaagcacctgatgggg 48
              ||||||||||||||||||| || ||||||||||||
Sbjct: 141583 gtggtacatcctctcgcag-aatcacctgatgggg 141616

to top

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score =  228 bits (115), Expect = 2e-56
 Identities = 175/195 (89%)
 Strand = Plus / Plus

                                                                           
Query: 186     gttcctggtgagtacttttgtggtcttgatgctagtggcagaagatttgatacagatcaa 245
               |||||||| ||||| ||||||||  |||||| ||| |||||||||| |||| ||||||||
Sbjct: 1848435 gttcctggagagtatttttgtggcattgatggtagcggcagaagatatgatgcagatcaa 1848494

                                                                           
Query: 246     agaccagaactttctaagggaacagtggagtttgttgctcctactgaatatatggtcagg 305
               ||||| || ||||||||||||||||| |||||||||||||| ||||||||||||||  ||
Sbjct: 1848495 agacctgagctttctaagggaacagtagagtttgttgctcccactgaatatatggtgcgg 1848554

                                                                           
Query: 306     ccaccaatgccgccttcctatttctttcttattgatgtctcagtatctgcagttcgaagt 365
               ||||||||||| || ||||||||||||||||||||||| || ||||||||||||||||| 
Sbjct: 1848555 ccaccaatgccaccctcctatttctttcttattgatgtgtccgtatctgcagttcgaagc 1848614

                              
Query: 366     gggctgctcgaggta 380
               |||||||| ||||||
Sbjct: 1848615 gggctgcttgaggta 1848629



 Score =  184 bits (93), Expect = 2e-43
 Identities = 141/157 (89%)
 Strand = Plus / Plus

                                                                           
Query: 501     cctcaaatgatggtggttgccgacttggacgatgttttcctgccattgcctgacgatctc 560
               ||||||||||||||||| || || ||||| |||||||||||||| |||||||| || |||
Sbjct: 1849016 cctcaaatgatggtggtcgctgatttggatgatgttttcctgccgttgcctgatgacctc 1849075

                                                                           
Query: 561     ttggttaatttggtcgattctagacatgttatcgagtctttcctcgataacttgcccaat 620
               |||||||||||||| || |||||||||||| |||| || || ||||||| |||||| |||
Sbjct: 1849076 ttggttaatttggttgactctagacatgttgtcgattcatttctcgatagcttgccaaat 1849135

                                                    
Query: 621     atgtttcaggacaatgtaaatgtagaatctgctcttg 657
               ||||| |||||||||||||||||||||||||||||||
Sbjct: 1849136 atgttccaggacaatgtaaatgtagaatctgctcttg 1849172



 Score =  133 bits (67), Expect = 8e-28
 Identities = 109/123 (88%)
 Strand = Plus / Plus

                                                                           
Query: 64      tcaactttgggtcggccggcgtaatccgctgccgaagatgcaggacatatataaatcctt 123
               ||||||||||||| || || || ||||| ||||||||||| || ||||||||||| ||||
Sbjct: 1846443 tcaactttgggtcagctggtgtcatccgttgccgaagatgtagaacatatataaaccctt 1846502

                                                                           
Query: 124     atgcaacatttgcagatgctggaaggaaatggcgctgcaatctctgcacattgctcaatg 183
               | |||||||| || ||||||||||||||||||||||||||||| |||||  |||||||||
Sbjct: 1846503 acgcaacattcgcggatgctggaaggaaatggcgctgcaatctttgcacgctgctcaatg 1846562

                  
Query: 184     atg 186
               |||
Sbjct: 1846563 atg 1846565



 Score =  107 bits (54), Expect = 5e-20
 Identities = 96/110 (87%)
 Strand = Plus / Plus

                                                                           
Query: 376     aggtagttgcgaagaccatcaagtcatgtcttgatgatcttctaggctttccacggacac 435
               |||| ||||| ||||||||||| ||||| |||||||| || | ||| |||||||| ||||
Sbjct: 1848778 aggttgttgcaaagaccatcaaatcatgccttgatgacctcccagggtttccacgaacac 1848837

                                                                 
Query: 436     aaattggattcttaacctttgatagcacattacacttccacaatttcaag 485
               | |||||||||||||| |||||||||||||| ||||| || |||||||||
Sbjct: 1848838 agattggattcttaacttttgatagcacattgcactttcataatttcaag 1848887



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 33/35 (94%), Gaps = 1/35 (2%)
 Strand = Plus / Plus

                                                  
Query: 14      gtggtacatcctctcgcagnaagcacctgatgggg 48
               ||||||||||||||||||| || ||||||||||||
Sbjct: 1846315 gtggtacatcctctcgcag-aatcacctgatgggg 1846348

to top

>gb|AC114011.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0078f20, complete sequence
          Length = 151042

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 324   tatttctttcttattgatgtctc 346
             |||||||||||||||||||||||
Sbjct: 80481 tatttctttcttattgatgtctc 80503

to top

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 324      tatttctttcttattgatgtctc 346
                |||||||||||||||||||||||
Sbjct: 16340046 tatttctttcttattgatgtctc 16340068

to top

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 324      tatttctttcttattgatgtctc 346
                |||||||||||||||||||||||
Sbjct: 16430025 tatttctttcttattgatgtctc 16430047

to top

>gb|AY734899.1| Rhagoletis pomonella clone PS15 microsatellite sequence
          Length = 327

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 122 ttatgcaacatttgcagatgct 143
           ||||||||||||||||||||||
Sbjct: 142 ttatgcaacatttgcagatgct 163

to top

>gb|AC010214.7|AC010214 Drosophila melanogaster, chromosome 2L, region 34A-34A, BAC clone
             BACR27F17, complete sequence
          Length = 174036

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 121   cttatgcaacatttgcagatgc 142
             ||||||||||||||||||||||
Sbjct: 49656 cttatgcaacatttgcagatgc 49635



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 121   cttatgcaacatttgcagatgc 142
             ||||||||||||||||||||||
Sbjct: 46138 cttatgcaacatttgcagatgc 46159

to top

>gb|AE003639.3| Drosophila melanogaster chromosome 2L, section 48 of 83 of the complete
             sequence
          Length = 261775

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 121   cttatgcaacatttgcagatgc 142
             ||||||||||||||||||||||
Sbjct: 18076 cttatgcaacatttgcagatgc 18055



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 121   cttatgcaacatttgcagatgc 142
             ||||||||||||||||||||||
Sbjct: 14558 cttatgcaacatttgcagatgc 14579

to top

>gb|CP000001.1| Bacillus cereus E33L, complete genome
          Length = 5300915

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 318     ccttcctatttctttcttatt 338
               |||||||||||||||||||||
Sbjct: 5135223 ccttcctatttctttcttatt 5135243

to top

>emb|AL161587.2|ATCHRIV83 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83
          Length = 197859

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 330   tttcttattgatgtctcagtatctg 354
             ||||||||| |||||||||||||||
Sbjct: 82335 tttcttatttatgtctcagtatctg 82359

to top

>emb|AL022604.1|ATF23E12 Arabidopsis thaliana DNA chromosome 4, BAC clone  F23E12 (ESSA project)
          Length = 86710

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 330   tttcttattgatgtctcagtatctg 354
             ||||||||| |||||||||||||||
Sbjct: 21016 tttcttatttatgtctcagtatctg 20992

to top

>emb|CR932802.1| Mus musculus chromosome 2, clone GenSys-198F12 strain 129/Sv, complete
             sequence
          Length = 99647

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 319   cttcctatttctttcttattg 339
             |||||||||||||||||||||
Sbjct: 48480 cttcctatttctttcttattg 48500

to top

>emb|BX571892.9| Mouse DNA sequence from clone RP23-207B21 on chromosome 2, complete
             sequence
          Length = 170046

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 319   cttcctatttctttcttattg 339
             |||||||||||||||||||||
Sbjct: 24064 cttcctatttctttcttattg 24084

to top

>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome
          Length = 5224283

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 318     ccttcctatttctttcttatt 338
               |||||||||||||||||||||
Sbjct: 5044364 ccttcctatttctttcttatt 5044384

to top

>ref|XM_954804.1| Neurospora crassa OR74A hypothetical protein (NCU02253.1) partial
           mRNA
          Length = 828

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 405 cttgatgatcttctaggctt 424
           ||||||||||||||||||||
Sbjct: 640 cttgatgatcttctaggctt 659

to top

>ref|XM_331028.1| Neurospora crassa OR74A hypothetical protein (NCU02253.1) partial
           mRNA
          Length = 828

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 405 cttgatgatcttctaggctt 424
           ||||||||||||||||||||
Sbjct: 640 cttgatgatcttctaggctt 659

to top

>gb|AC122339.3| Mus musculus BAC clone RP23-353L10 from chromosome 5, complete sequence
          Length = 203685

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 480   ttcaagtcttctctgagtca 499
             ||||||||||||||||||||
Sbjct: 74493 ttcaagtcttctctgagtca 74512

to top

>emb|AL121998.7|HSJ1103B4 Human DNA sequence from clone RP5-1103B4 on chromosome 1 Contains the C8A
              gene for complement component 8 alpha polypeptide, the C8B
              gene for complement component 8 beta polypeptide and a
              novel gene, complete sequence
          Length = 131188

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 188    tcctggtgagtacttttgtg 207
              ||||||||||||||||||||
Sbjct: 104935 tcctggtgagtacttttgtg 104916

to top

>emb|BX908789.1| Neurospora crassa DNA linkage group VII BAC clone B13D24
          Length = 107482

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 405   cttgatgatcttctaggctt 424
             ||||||||||||||||||||
Sbjct: 94744 cttgatgatcttctaggctt 94725

to top

>emb|BX897700.1| Bartonella quintana str. Toulouse, complete genome
          Length = 1581384

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 526    tggacgatgttttcctgcca 545
              ||||||||||||||||||||
Sbjct: 874828 tggacgatgttttcctgcca 874847

to top

>gb|AC025477.6| Homo sapiens chromosome 5 clone RP11-432A10, complete sequence
          Length = 154272

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 477    aatttcaagtcttctctgag 496
              ||||||||||||||||||||
Sbjct: 143673 aatttcaagtcttctctgag 143654

to top

>gb|AC105763.5| Homo sapiens BAC clone RP11-698H21 from 4, complete sequence
          Length = 147214

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 223    gcagaagatttgatacagatcaaa 246
              |||||||||||||||||| |||||
Sbjct: 133057 gcagaagatttgatacagttcaaa 133034

to top

>gb|AC079160.5| Homo sapiens BAC clone RP11-176K15 from 4, complete sequence
          Length = 147727

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 319   cttcctatttctttcttatt 338
             ||||||||||||||||||||
Sbjct: 28981 cttcctatttctttcttatt 28962

to top

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 104      caggacatatataaatcctt 123
                ||||||||||||||||||||
Sbjct: 23587259 caggacatatataaatcctt 23587240

to top

>gb|AC156831.2| Mus musculus BAC clone RP24-276N6 from chromosome 9, complete sequence
          Length = 152361

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 323   ctatttctttcttattgatg 342
             ||||||||||||||||||||
Sbjct: 48175 ctatttctttcttattgatg 48156

to top

>gb|AC092134.4| Homo sapiens chromosome 16 clone RP11-264M12, complete sequence
          Length = 159925

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 453   tttgatagcacattacacttccac 476
             |||| |||||||||||||||||||
Sbjct: 94350 tttggtagcacattacacttccac 94373

to top

>gb|AC011231.7| Homo sapiens BAC clone RP11-13K3 from 2, complete sequence
          Length = 119205

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 432    acacaaattggattcttaac 451
              ||||||||||||||||||||
Sbjct: 106518 acacaaattggattcttaac 106499

to top

>dbj|AP003917.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1666_A04
          Length = 90097

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   caggacatatataaatcctt 123
             ||||||||||||||||||||
Sbjct: 67034 caggacatatataaatcctt 67015

to top

>ref|XM_314353.2| Anopheles gambiae str. PEST ENSANGP00000012686
           (ENSANGG00000010197), partial mRNA
          Length = 691

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 127 caacatttgcagatgctgga 146
           ||||||||||||||||||||
Sbjct: 38  caacatttgcagatgctgga 57

to top

>gb|AC010077.1|AC010077 Homo sapiens chromosome 19, cosmid R28278, complete sequence
          Length = 46934

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 128  aacatttgcagatgctggaaggaa 151
            |||||||||||||||| |||||||
Sbjct: 5245 aacatttgcagatgctagaaggaa 5268

to top

>dbj|AP001697.1| Homo sapiens genomic DNA, chromosome 21q, section 41/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 633   aatgtaaatgtagaatctgctctt 656
             |||||| |||||||||||||||||
Sbjct: 76862 aatgtagatgtagaatctgctctt 76885

to top

>emb|AJ891074.1| Oryzorictes hova partial adrab2 gene for alpha 2B adrenergic
           receptor
          Length = 1149

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 9   gaggcgtggtacatcctctc 28
           ||||||||||||||||||||
Sbjct: 465 gaggcgtggtacatcctctc 484

to top

>emb|AJ891072.1| Microgale brevicaudata partial adrab2 gene for alpha 2B adrenergic
           receptor
          Length = 1146

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 9   gaggcgtggtacatcctctc 28
           ||||||||||||||||||||
Sbjct: 465 gaggcgtggtacatcctctc 484

to top

>emb|AJ891069.1| Limnogale mergulus partial adrab2 gene for alpha 2B adrenergic
           receptor
          Length = 1143

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 9   gaggcgtggtacatcctctc 28
           ||||||||||||||||||||
Sbjct: 466 gaggcgtggtacatcctctc 485

to top

>emb|AL928911.7| Mouse DNA sequence from clone RP23-271N3 on chromosome 2, complete
             sequence
          Length = 93455

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 607   ataacttgcccaatatgttt 626
             ||||||||||||||||||||
Sbjct: 58115 ataacttgcccaatatgttt 58096

to top

>emb|AL731789.9| Mouse DNA sequence from clone RP23-52F6 on chromosome X, complete
             sequence
          Length = 218939

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 318   ccttcctatttctttcttat 337
             ||||||||||||||||||||
Sbjct: 62434 ccttcctatttctttcttat 62415

to top

>dbj|AP001598.1| Homo sapiens genomic DNA, chromosome 21, clone:KB2043D3, APP-D21S292
             region, complete sequence
          Length = 171038

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 633   aatgtaaatgtagaatctgctctt 656
             |||||| |||||||||||||||||
Sbjct: 10881 aatgtagatgtagaatctgctctt 10904


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,914,532
Number of Sequences: 3902068
Number of extensions: 5914532
Number of successful extensions: 102784
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102599
Number of HSP's gapped (non-prelim): 182
length of query: 657
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 634
effective length of database: 17,143,297,704
effective search space: 10868850744336
effective search space used: 10868850744336
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result