ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal29l06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_467558.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1454 Score = 91.7 bits (46), Expect = 1e-15 Identities = 76/86 (88%) Strand = Plus / Plus Query: 21 aacatattggacaaggagagattgtgggccatctgtggaggggccagttgggtttgtctg 80 |||||||||||||||||||||| |||| |||||| |||||||| ||| |||||||||||| Sbjct: 845 aacatattggacaaggagagatcgtggaccatctatggaggggtcagatgggtttgtctg 904 Query: 81 aagagcagcagaaaaaagctctggag 106 |||| |||||| ||||| |||||| Sbjct: 905 aagaagagcagaggaaagccctggag 930 Score = 67.9 bits (34), Expect = 2e-08 Identities = 69/80 (86%), Gaps = 3/80 (3%) Strand = Plus / Plus Query: 189 ctgcttgcaaccctacacctgcaggtggatgctgccagggcaatggaggagggttaacct 248 |||||||||||||| |||||||||| ||||||||||||||| ||||| || |||| Sbjct: 1001 ctgcttgcaaccctgtcgctgcaggtggttgctgccagggcaat---ggaggctttacct 1057 Query: 249 gctgccaaagtgatctgcca 268 ||||||| |||||||||||| Sbjct: 1058 gctgccagagtgatctgcca 1077
>ref|XM_506948.1| PREDICTED Oryza sativa (japonica cultivar-group), P0685G12.41 mRNA Length = 1611 Score = 91.7 bits (46), Expect = 1e-15 Identities = 76/86 (88%) Strand = Plus / Plus Query: 21 aacatattggacaaggagagattgtgggccatctgtggaggggccagttgggtttgtctg 80 |||||||||||||||||||||| |||| |||||| |||||||| ||| |||||||||||| Sbjct: 844 aacatattggacaaggagagatcgtggaccatctatggaggggtcagatgggtttgtctg 903 Query: 81 aagagcagcagaaaaaagctctggag 106 |||| |||||| ||||| |||||| Sbjct: 904 aagaagagcagaggaaagccctggag 929 Score = 67.9 bits (34), Expect = 2e-08 Identities = 69/80 (86%), Gaps = 3/80 (3%) Strand = Plus / Plus Query: 189 ctgcttgcaaccctacacctgcaggtggatgctgccagggcaatggaggagggttaacct 248 |||||||||||||| |||||||||| ||||||||||||||| ||||| || |||| Sbjct: 1000 ctgcttgcaaccctgtcgctgcaggtggttgctgccagggcaat---ggaggctttacct 1056 Query: 249 gctgccaaagtgatctgcca 268 ||||||| |||||||||||| Sbjct: 1057 gctgccagagtgatctgcca 1076
>dbj|AK104276.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-003-A01, full insert sequence Length = 1454 Score = 91.7 bits (46), Expect = 1e-15 Identities = 76/86 (88%) Strand = Plus / Plus Query: 21 aacatattggacaaggagagattgtgggccatctgtggaggggccagttgggtttgtctg 80 |||||||||||||||||||||| |||| |||||| |||||||| ||| |||||||||||| Sbjct: 845 aacatattggacaaggagagatcgtggaccatctatggaggggtcagatgggtttgtctg 904 Query: 81 aagagcagcagaaaaaagctctggag 106 |||| |||||| ||||| |||||| Sbjct: 905 aagaagagcagaggaaagccctggag 930 Score = 67.9 bits (34), Expect = 2e-08 Identities = 69/80 (86%), Gaps = 3/80 (3%) Strand = Plus / Plus Query: 189 ctgcttgcaaccctacacctgcaggtggatgctgccagggcaatggaggagggttaacct 248 |||||||||||||| |||||||||| ||||||||||||||| ||||| || |||| Sbjct: 1001 ctgcttgcaaccctgtcgctgcaggtggttgctgccagggcaat---ggaggctttacct 1057 Query: 249 gctgccaaagtgatctgcca 268 ||||||| |||||||||||| Sbjct: 1058 gctgccagagtgatctgcca 1077
>dbj|AK071759.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023109C03, full insert sequence Length = 1611 Score = 91.7 bits (46), Expect = 1e-15 Identities = 76/86 (88%) Strand = Plus / Plus Query: 21 aacatattggacaaggagagattgtgggccatctgtggaggggccagttgggtttgtctg 80 |||||||||||||||||||||| |||| |||||| |||||||| ||| |||||||||||| Sbjct: 844 aacatattggacaaggagagatcgtggaccatctatggaggggtcagatgggtttgtctg 903 Query: 81 aagagcagcagaaaaaagctctggag 106 |||| |||||| ||||| |||||| Sbjct: 904 aagaagagcagaggaaagccctggag 929 Score = 67.9 bits (34), Expect = 2e-08 Identities = 69/80 (86%), Gaps = 3/80 (3%) Strand = Plus / Plus Query: 189 ctgcttgcaaccctacacctgcaggtggatgctgccagggcaatggaggagggttaacct 248 |||||||||||||| |||||||||| ||||||||||||||| ||||| || |||| Sbjct: 1000 ctgcttgcaaccctgtcgctgcaggtggttgctgccagggcaat---ggaggctttacct 1056 Query: 249 gctgccaaagtgatctgcca 268 ||||||| |||||||||||| Sbjct: 1057 gctgccagagtgatctgcca 1076
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 67.9 bits (34), Expect = 2e-08 Identities = 69/80 (86%), Gaps = 3/80 (3%) Strand = Plus / Minus Query: 189 ctgcttgcaaccctacacctgcaggtggatgctgccagggcaatggaggagggttaacct 248 |||||||||||||| |||||||||| ||||||||||||||| ||||| || |||| Sbjct: 30158857 ctgcttgcaaccctgtcgctgcaggtggttgctgccagggcaat---ggaggctttacct 30158801 Query: 249 gctgccaaagtgatctgcca 268 ||||||| |||||||||||| Sbjct: 30158800 gctgccagagtgatctgcca 30158781 Score = 58.0 bits (29), Expect = 1e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 21 aacatattggacaaggagagattgtgggccatctgtggagg 61 |||||||||||||||||||||| |||| |||||| |||||| Sbjct: 30159950 aacatattggacaaggagagatcgtggaccatctatggagg 30159910 Score = 40.1 bits (20), Expect = 3.5 Identities = 41/48 (85%) Strand = Plus / Minus Query: 59 aggggccagttgggtttgtctgaagagcagcagaaaaaagctctggag 106 ||||| ||| |||||||||||||||| |||||| ||||| |||||| Sbjct: 30158975 aggggtcagatgggtttgtctgaagaagagcagaggaaagccctggag 30158928
>dbj|AP005113.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0685G12 Length = 149155 Score = 67.9 bits (34), Expect = 2e-08 Identities = 69/80 (86%), Gaps = 3/80 (3%) Strand = Plus / Minus Query: 189 ctgcttgcaaccctacacctgcaggtggatgctgccagggcaatggaggagggttaacct 248 |||||||||||||| |||||||||| ||||||||||||||| ||||| || |||| Sbjct: 138454 ctgcttgcaaccctgtcgctgcaggtggttgctgccagggcaat---ggaggctttacct 138398 Query: 249 gctgccaaagtgatctgcca 268 ||||||| |||||||||||| Sbjct: 138397 gctgccagagtgatctgcca 138378 Score = 58.0 bits (29), Expect = 1e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 21 aacatattggacaaggagagattgtgggccatctgtggagg 61 |||||||||||||||||||||| |||| |||||| |||||| Sbjct: 139547 aacatattggacaaggagagatcgtggaccatctatggagg 139507 Score = 40.1 bits (20), Expect = 3.5 Identities = 41/48 (85%) Strand = Plus / Minus Query: 59 aggggccagttgggtttgtctgaagagcagcagaaaaaagctctggag 106 ||||| ||| |||||||||||||||| |||||| ||||| |||||| Sbjct: 138572 aggggtcagatgggtttgtctgaagaagagcagaggaaagccctggag 138525
>dbj|AP004179.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1124_G07 Length = 93240 Score = 67.9 bits (34), Expect = 2e-08 Identities = 69/80 (86%), Gaps = 3/80 (3%) Strand = Plus / Minus Query: 189 ctgcttgcaaccctacacctgcaggtggatgctgccagggcaatggaggagggttaacct 248 |||||||||||||| |||||||||| ||||||||||||||| ||||| || |||| Sbjct: 31561 ctgcttgcaaccctgtcgctgcaggtggttgctgccagggcaat---ggaggctttacct 31505 Query: 249 gctgccaaagtgatctgcca 268 ||||||| |||||||||||| Sbjct: 31504 gctgccagagtgatctgcca 31485 Score = 58.0 bits (29), Expect = 1e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 21 aacatattggacaaggagagattgtgggccatctgtggagg 61 |||||||||||||||||||||| |||| |||||| |||||| Sbjct: 32654 aacatattggacaaggagagatcgtggaccatctatggagg 32614 Score = 40.1 bits (20), Expect = 3.5 Identities = 41/48 (85%) Strand = Plus / Minus Query: 59 aggggccagttgggtttgtctgaagagcagcagaaaaaagctctggag 106 ||||| ||| |||||||||||||||| |||||| ||||| |||||| Sbjct: 31679 aggggtcagatgggtttgtctgaagaagagcagaggaaagccctggag 31632
>emb|AL672284.15| Mouse DNA sequence from clone RP23-39I7 on chromosome X, complete sequence Length = 227918 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Plus Query: 149 gccaaagaatcccctgaagcaa 170 |||||||||||||||||||||| Sbjct: 65835 gccaaagaatcccctgaagcaa 65856
>gb|AC100738.8| Mus musculus chromosome 15, clone RP24-362K21, complete sequence Length = 128950 Score = 42.1 bits (21), Expect = 0.88 Identities = 21/21 (100%) Strand = Plus / Minus Query: 160 ccctgaagcaaatggaaccaa 180 ||||||||||||||||||||| Sbjct: 86353 ccctgaagcaaatggaaccaa 86333
>gb|AE014133.1| Streptococcus mutans UA159, complete genome Length = 2030921 Score = 42.1 bits (21), Expect = 0.88 Identities = 21/21 (100%) Strand = Plus / Plus Query: 6 ctgtgttactgcgtcaacata 26 ||||||||||||||||||||| Sbjct: 1592834 ctgtgttactgcgtcaacata 1592854
>gb|AC146329.19| Medicago truncatula clone mth2-5i21, complete sequence Length = 142834 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 aacctgctgccaaagtgatc 263 |||||||||||||||||||| Sbjct: 59184 aacctgctgccaaagtgatc 59203
>emb|AL662874.9| Human DNA sequence from clone RP13-24G8 on chromosome X Contains a novel gene, a delta sleep inducing peptide, immunoreactor (DSIPI) pseudogene, the PABPC5 gene for poly(A) binding protein, cytoplasmic 5 and a CpG island, complete sequence Length = 160906 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 acaaggagagattgtgggcc 50 |||||||||||||||||||| Sbjct: 96053 acaaggagagattgtgggcc 96034
>emb|BX569693.1| Synechococcus sp. WH8102 complete genome; segment 5/7 Length = 349213 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 130 aactgaggaagaatcaagcgccaa 153 ||||||||||||||||| |||||| Sbjct: 103289 aactgaggaagaatcaatcgccaa 103312
>emb|BX571953.9| Zebrafish DNA sequence from clone RP71-69B23 in linkage group 13, complete sequence Length = 144282 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 gtctgaagagcagcagaaaa 95 |||||||||||||||||||| Sbjct: 94160 gtctgaagagcagcagaaaa 94179
>gb|AC106821.2| Homo sapiens chromosome 5 clone RP11-730N24, complete sequence Length = 151355 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 gagattgtgggccatctgtg 57 |||||||||||||||||||| Sbjct: 85902 gagattgtgggccatctgtg 85883
>gb|AC008192.8|AC008192 Drosophila melanogaster, chromosome 3R, region 92A-92A, BAC clone BACR12P10, complete sequence Length = 186686 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 ctgaagagcagcagaaaaaa 97 |||||||||||||||||||| Sbjct: 94951 ctgaagagcagcagaaaaaa 94970
>gb|AC010142.4|AC010142 Homo sapiens BAC clone RP11-240N18 from Y, complete sequence Length = 136462 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 acaaggagagattgtgggcc 50 |||||||||||||||||||| Sbjct: 72341 acaaggagagattgtgggcc 72322
>gb|AC151053.2| Mus musculus BAC clone RP23-402A4 from 7, complete sequence Length = 201862 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 gccatctgtggaggggccag 67 |||||||||||||||||||| Sbjct: 47526 gccatctgtggaggggccag 47507
>gb|AE003726.3| Drosophila melanogaster chromosome 3R, section 64 of 118 of the complete sequence Length = 247876 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 ctgaagagcagcagaaaaaa 97 |||||||||||||||||||| Sbjct: 153110 ctgaagagcagcagaaaaaa 153129 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,631,782 Number of Sequences: 3902068 Number of extensions: 2631782 Number of successful extensions: 43124 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43061 Number of HSP's gapped (non-prelim): 49 length of query: 268 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 246 effective length of database: 17,147,199,772 effective search space: 4218211143912 effective search space used: 4218211143912 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
