Clone Name	baal29j13
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5....	107	2e-23
2	PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5....	106	4e-23
3	PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5....	91	2e-18
4	YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5	58	2e-08
5	GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A	57	2e-08
6	GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A	57	4e-08
7	SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-a...	56	5e-08
8	GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2	55	1e-07
9	GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7	55	1e-07
10	PPIE_SCHMA (Q26548) Peptidyl-prolyl cis-trans isomerase E (EC 5....	55	1e-07
11	GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)	54	3e-07
12	GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-indu...	54	3e-07
13	GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein	54	3e-07
14	GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 pro...	53	4e-07
15	RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA	52	7e-07
16	GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochon...	52	1e-06
17	RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding ...	52	1e-06
18	GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10	52	1e-06
19	RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding ...	52	1e-06
20	HNRPC_RAT (P17132) Heterogeneous nuclear ribonucleoprotein C (hn...	51	2e-06
21	HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (h...	51	2e-06
22	HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 ...	51	2e-06
23	HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 ...	51	2e-06
24	HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (...	49	6e-06
25	TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)	49	6e-06
26	HNRU2_HUMAN (P07029) Heterogeneous nuclear ribonucleoprotein UP2...	49	6e-06
27	RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Co...	49	6e-06
28	RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (He...	49	6e-06
29	RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-bindin...	49	8e-06
30	HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hn...	49	1e-05
31	TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding p...	48	1e-05
32	TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)	48	1e-05
33	TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)	48	1e-05
34	SAP49_SCHPO (O14102) Spliceosome-associated protein 49	48	2e-05
35	RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial pre...	47	2e-05
36	CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-r...	47	2e-05
37	CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine...	47	2e-05
38	CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine...	47	2e-05
39	YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 i...	47	3e-05
40	CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine...	47	3e-05
41	CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine...	47	3e-05
42	PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (6...	47	3e-05
43	ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precur...	47	4e-05
44	ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precur...	47	4e-05
45	ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast prec...	47	4e-05
46	ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)	46	5e-05
47	ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (P...	46	5e-05
48	CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine...	46	5e-05
49	ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (E...	46	5e-05
50	ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)	46	5e-05
51	ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2	46	5e-05
52	ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (E...	46	5e-05
53	ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1	45	9e-05
54	ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B ...	45	9e-05
55	ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor	45	9e-05
56	MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musash...	45	1e-04
57	MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musa...	45	1e-04
58	MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musa...	45	1e-04
59	DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in azoosp...	45	1e-04
60	ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalo...	45	1e-04
61	ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encepha...	45	1e-04
62	ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encepha...	45	1e-04
63	ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precur...	45	1e-04
64	ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)	45	2e-04
65	DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in azoosp...	44	2e-04
66	ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (E...	44	2e-04
67	ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)	44	2e-04
68	RB97D_DROME (Q02926) Ribonucleoprotein RB97D	44	3e-04
69	DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in azoosp...	44	3e-04
70	MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musa...	43	5e-04
71	MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musa...	43	5e-04
72	ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 ...	43	6e-04
73	RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C...	43	6e-04
74	RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-bindin...	42	0.001
75	ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precur...	42	0.001
76	ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast prec...	42	0.001
77	ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B ...	42	0.001
78	RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 h...	42	0.001
79	RU17_YEAST (Q00916) U1 small nuclear ribonucleoprotein 70 kDa ho...	42	0.001
80	SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nucl...	42	0.001
81	RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, fa...	42	0.001
82	ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor	41	0.002
83	ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1 (...	41	0.002
84	ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precur...	41	0.002
85	ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, ...	41	0.002
86	ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/...	41	0.002
87	ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1 (...	41	0.002
88	ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/...	41	0.002
89	ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1 (He...	41	0.002
90	ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1 (...	41	0.002
91	ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1 (...	41	0.002
92	RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 h...	40	0.003
93	RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 h...	40	0.003
94	RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F...	40	0.003
95	EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Emb...	40	0.003
96	ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (...	40	0.004
97	FCA_ARATH (O04425) Flowering time control protein FCA	40	0.004
98	NSR1_YEAST (P27476) Nuclear localization sequence-binding protei...	40	0.004
99	DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autoso...	40	0.005
100	DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autoso...	40	0.005
101	ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloro...	40	0.005
102	ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hn...	40	0.005
103	ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (...	40	0.005
104	ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visu...	40	0.005
105	ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (...	40	0.005
106	ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visu...	40	0.005
107	PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-b...	40	0.005
108	DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autoso...	40	0.005
109	DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autoso...	39	0.007
110	RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 h...	39	0.007
111	RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2	39	0.009
112	CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1	39	0.009
113	DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)	39	0.009
114	YNL0_YEAST (P53927) Hypothetical 25.4 kDa protein in CYB5-LEU4 i...	39	0.011
115	RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, ch...	39	0.011
116	EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (...	39	0.011
117	RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interact...	39	0.011
118	PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-bi...	39	0.011
119	RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interact...	38	0.015
120	EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (...	38	0.015
121	RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interact...	38	0.015
122	HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4...	38	0.019
123	RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HS...	38	0.019
124	DAZ1_HUMAN (Q9NQZ3) Deleted in azoospermia protein 1	37	0.025
125	RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ss...	37	0.025
126	DAZ4_HUMAN (Q86SG3) Deleted in azoospermia protein 4	37	0.025
127	DAZ3_HUMAN (Q9NR90) Deleted in azoospermia protein 3	37	0.025
128	RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-bindin...	37	0.025
129	MY18A_MOUSE (Q9JMH9) Myosin-18A (Myosin XVIIIa) (Myosin containi...	37	0.025
130	MY18A_HUMAN (Q92614) Myosin-18A (Myosin XVIIIa) (Myosin containi...	37	0.025
131	DAZ2_HUMAN (Q13117) Deleted in azoospermia protein 2	37	0.025
132	IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 s...	37	0.025
133	IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 s...	37	0.025
134	RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interact...	37	0.033
135	RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-bindin...	37	0.033
136	GAR2_SCHPO (P41891) Protein gar2	37	0.033
137	ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (...	37	0.042
138	TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)	37	0.042
139	TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)	37	0.042
140	RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif pro...	37	0.042
141	RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2	36	0.055
142	DAZL_BRARE (Q9YGW7) Deleted in azoospermia-like (DAZ-like protei...	36	0.055
143	HSH49_YEAST (Q99181) Protein HSH49	36	0.072
144	PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic a...	36	0.072
145	PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-bi...	35	0.095
146	NAM8_YEAST (Q00539) Protein NAM8	35	0.095
147	RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif p...	35	0.095
148	PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-bi...	35	0.12
149	MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing prote...	35	0.12
150	RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-ri...	35	0.16
151	PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-bindi...	35	0.16
152	IF34_CAEEL (Q19706) Probable eukaryotic translation initiation f...	35	0.16
153	CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (C...	35	0.16
154	CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (C...	35	0.16
155	TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)	35	0.16
156	G3B2_MOUSE (P97379) Ras-GTPase-activating protein-binding protei...	35	0.16
157	G3B2_HUMAN (Q9UN86) Ras-GTPase-activating protein-binding protei...	35	0.16
158	YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c i...	34	0.21
159	PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-bi...	34	0.21
160	PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-bi...	34	0.21
161	PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-bi...	34	0.21
162	PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-bi...	34	0.21
163	PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-bi...	34	0.21
164	PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-bi...	34	0.21
165	TADBP_MOUSE (Q921F2) TAR DNA-binding protein 43 (TDP-43)	34	0.21
166	PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-...	34	0.21
167	PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-...	34	0.21
168	NCBP2_XENLA (P52299) Nuclear cap binding protein subunit 2 (20 k...	34	0.21
169	IF2_RHIME (Q92SW4) Translation initiation factor IF-2	34	0.21
170	NONA_DROME (Q04047) Protein no-on-transient A (Puff-specific pro...	34	0.28
171	YHH5_YEAST (P38760) Hypothetical 75.9 kDa protein in SPO13-ARG4 ...	33	0.36
172	MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing prote...	33	0.36
173	MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phos...	33	0.36
174	RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif p...	33	0.47
175	PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-bind...	33	0.47
176	PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-bi...	33	0.47
177	PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-bi...	33	0.47
178	PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-bi...	33	0.47
179	NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA...	33	0.47
180	HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (...	33	0.61
181	HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (...	33	0.61
182	HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hn...	33	0.61
183	TNNI_CHLNI (Q7M3Y3) Troponin I (TnI)	33	0.61
184	IF4G_SCHPO (Q10475) Eukaryotic translation initiation factor 4 g...	33	0.61
185	NONA_DROLR (Q9GRX4) Protein no-on-transient A	32	0.80
186	PDE9A_HUMAN (O76083) High-affinity cGMP-specific 3',5'-cyclic ph...	32	0.80
187	NONA_DROVI (Q9GRW7) Protein no-on-transient A	32	0.80
188	GLE1_DROME (Q9V4W1) Nucleoporin GLE1	32	0.80
189	MK67I_HUMAN (Q9BYG3) MKI67 FHA domain-interacting nucleolar phos...	32	1.0
190	PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-bi...	32	1.0
191	TOLA_PSEAE (P50600) Protein tolA	32	1.0
192	LNT_BORBU (O51253) Apolipoprotein N-acyltransferase (EC 2.3.1.-)...	32	1.0
193	SAFB2_HUMAN (Q14151) Scaffold attachment factor B2	32	1.0
194	POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;...	32	1.0
195	SAFB2_MOUSE (Q80YR5) Scaffold attachment factor B2	32	1.0
196	IF2P_HUMAN (O60841) Eukaryotic translation initiation factor 5B ...	32	1.4
197	HRP65_CHITE (Q9U1N0) Hrp65 protein (Ct-Hrp65)	32	1.4
198	IE68_SHV21 (Q01042) Immediate-early protein	31	1.8
199	DAZ1_CAEEL (Q20870) DAZ protein 1	31	2.3
200	RADI_MOUSE (P26043) Radixin (ESP10)	31	2.3
201	IF2_BURS3 (Q39H30) Translation initiation factor IF-2	31	2.3
202	PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-bi...	30	3.0
203	DEC11_DROME (P18169) Defective chorion-1 protein, FC125 isoform ...	30	3.0
204	DEC13_DROME (P18171) Defective chorion-1 protein, FC177 isoform ...	30	3.0
205	IF2_IDILO (Q5QTY8) Translation initiation factor IF-2	30	3.0
206	IF3A_TOBAC (Q40554) Eukaryotic translation initiation factor 3 s...	30	3.0
207	DEC12_DROME (P18170) Defective chorion-1 protein, FC106 isoform ...	30	3.0
208	RU2B_SCHPO (Q7LL14) Probable U2 small nuclear ribonucleoprotein B"	30	3.0
209	TCF8_HUMAN (P37275) Transcription factor 8 (NIL-2-A zinc finger ...	30	4.0
210	SWC3_ASHGO (Q758T8) SWR1-complex protein 3	30	4.0
211	NOP12_YARLI (Q6C2Q7) Nucleolar protein 12	30	4.0
212	IF3A_SCHPO (O74760) Probable eukaryotic translation initiation f...	30	4.0
213	CCD96_MACFA (Q95LS7) Coiled-coil domain-containing protein 96	30	4.0
214	SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich...	30	5.2
215	UPPS_METKA (Q8TXA7) Undecaprenyl pyrophosphate synthetase (EC 2....	30	5.2
216	RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif p...	30	5.2
217	SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich...	30	5.2
218	MNN4_YEAST (P36044) Protein MNN4	30	5.2
219	G3BP_MOUSE (P97855) Ras-GTPase-activating protein-binding protei...	30	5.2
220	CP306_DROME (Q9VWR5) Cytochrome P450 306a1 (EC 1.14.-.-) (CYPCCC...	29	6.8
221	NOP12_CANGA (Q6FUS6) Nucleolar protein 12	29	6.8
222	IF2_VIBCH (Q9KU80) Translation initiation factor IF-2	29	6.8
223	CALD1_CHICK (P12957) Caldesmon (CDM)	29	6.8
224	GCP60_MOUSE (Q8BMP6) Golgi resident protein GCP60 (Acyl-CoA-bind...	29	6.8
225	RNP4F_DROME (Q9W4D2) RNA-binding protein 4F	29	6.8
226	RADI_PIG (P26044) Radixin (Moesin-B)	29	6.8
227	RADI_HUMAN (P35241) Radixin	29	6.8
228	PO5FM_HUMAN (Q9BZV7) POU domain, class 5, transcription factor 1...	29	6.8
229	PO5FL_HUMAN (Q06416) POU domain, class 5, transcription factor 1...	29	6.8
230	GCP60_RAT (Q7TNY6) Golgi resident protein GCP60 (Acyl-CoA-bindin...	29	6.8
231	RNP24_SCHPO (Q09100) RNA-binding protein rnp24	29	8.9
232	RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif p...	29	8.9
233	SYDC_YEAST (P04802) Aspartyl-tRNA synthetase, cytoplasmic (EC 6....	29	8.9
234	BAT2_HUMAN (P48634) Large proline-rich protein BAT2 (HLA-B-assoc...	29	8.9
235	NCTR1_RAT (Q9Z0H5) Natural cytotoxicity triggering receptor 1 pr...	29	8.9
236	BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-assoc...	29	8.9
237	SEB1_SCHPO (Q9UTE3) Rpb7-binding protein seb1	29	8.9
238	ZN318_MOUSE (Q99PP2) Zinc finger protein 318 (Testicular zinc fi...	29	8.9
239	YCF2_OENPI (P31568) Protein ycf2 (Fragment)	29	8.9
240	TOLA_HAEIN (P44678) Protein tolA	29	8.9
241	TRHY_SHEEP (P22793) Trichohyalin	29	8.9
242	CEP35_HUMAN (Q5VT06) Centrosome-associated protein 350 (Centroso...	29	8.9
243	BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associa...	29	8.9
244	RADI_CHICK (Q9PU45) Radixin	29	8.9
245	MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing prote...	29	8.9
246	G3BP_HUMAN (Q13283) Ras-GTPase-activating protein-binding protei...	29	8.9
247	BAT2_MACMU (Q5TM26) Large proline-rich protein BAT2 (HLA-B-assoc...	29	8.9

---

>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase|
           E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33)
          Length = 301

 Score =  107 bits (268), Expect = 2e-23
 Identities = 60/149 (40%), Positives = 81/149 (54%)
 Frame = +1

Query: 49  KNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXX 228
           K  LYVGGLAEEVD+K+LHAAF+PFG++ D++ PLD  T+KHR F FV F   E      
Sbjct: 5   KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAI 64

Query: 229 XXXXXXELFGRVLTVNYAFPEKIKGGEQGWAAQPVWADADTWFERQQQEEEMKRLQTEQN 408
                 ELFGR + VN A P +IK G    +++PVW+D D W ++               
Sbjct: 65  DNMNESELFGRTIRVNLAKPMRIKEG----SSRPVWSD-DDWLKK--------------- 104

Query: 409 AAMKEAERLHREKVAAEKNGETDEADPMA 495
            + K  E    E+ +     ET E +P+A
Sbjct: 105 FSGKTLEENKEEEGSEPPKAETQEGEPIA 133

---

>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase|
           E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33)
          Length = 301

 Score =  106 bits (264), Expect = 4e-23
 Identities = 52/105 (49%), Positives = 68/105 (64%)
 Frame = +1

Query: 49  KNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXX 228
           K  LYVGGLAEEVD+K+LHAAF+PFG++ D++ PLD  T+KHR F FV F   E      
Sbjct: 5   KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAI 64

Query: 229 XXXXXXELFGRVLTVNYAFPEKIKGGEQGWAAQPVWADADTWFER 363
                 ELFGR + VN A P +IK G    +++PVW+D D W ++
Sbjct: 65  DNMNESELFGRTIRVNLAKPMRIKEG----SSRPVWSD-DDWLKK 104

---

>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase|
           E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33)
          Length = 300

 Score = 90.9 bits (224), Expect = 2e-18
 Identities = 47/137 (34%), Positives = 79/137 (57%), Gaps = 9/137 (6%)
 Frame = +1

Query: 49  KNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXX 228
           K T+YVGGLA+EV E++L+ AF+PFG++ D++ P D  +Q+HR F F+ + + E      
Sbjct: 5   KRTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAI 64

Query: 229 XXXXXXELFGRVLTVNYAFPEKIKGGEQGWAAQPVWADADTWFERQ-------QQEEEMK 387
                 EL GR + VN A P ++K      + +P+WAD D W ++        + E E +
Sbjct: 65  DNMNDSELCGRTIRVNLAKPVRVKED----SFKPIWAD-DDWLQKHAGATLQPEGEPEAE 119

Query: 388 RLQTEQN--AAMKEAER 432
           +++T     A +++AE+
Sbjct: 120 KVETPSTGPAVIEKAEK 136

---

>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5|
          Length = 388

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 31/79 (39%), Positives = 40/79 (50%)
 Frame = +1

Query: 46  QKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXX 225
           Q  T+YVGGL E+V E IL    V  G V  V  P D+ T  H+ FGFV F+  E     
Sbjct: 11  QDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYA 70

Query: 226 XXXXXXXELFGRVLTVNYA 282
                  +L+G+ + VN A
Sbjct: 71  IKILNMIKLYGKPIKVNKA 89



 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFG---EVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXX 228
           ++VG L  EVDEK+L+  F  FG   +V  +   +D  T K   F F+ F   E      
Sbjct: 102 IFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSK--GFAFINFASFEASDTAL 159

Query: 229 XXXXXXELFGRVLTVNYAFPEKIKGGEQGWAAQPVWADADTWFERQQQEE 378
                  L  R +TV+YAF    KG   G AA+ + A  +  F + +  +
Sbjct: 160 EAMNGQFLCNRAITVSYAFKRDSKGERHGTAAERMLAAQNPLFPKDRPHQ 209

---

>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A|
          Length = 166

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 35/95 (36%), Positives = 46/95 (48%)
 Frame = +1

Query: 31  MNQPVQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLERE 210
           M  P  +   +VGGLA   D++ L  AF  +GEV D K   D+ T + R FGFVTF + +
Sbjct: 1   MASPDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 211 XXXXXXXXXXXXELFGRVLTVNYAFPEKIKGGEQG 315
                       +L GR +TVN A      GG  G
Sbjct: 61  SMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGG 95

---

>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A|
          Length = 169

 Score = 56.6 bits (135), Expect = 4e-08
 Identities = 33/84 (39%), Positives = 43/84 (51%)
 Frame = +1

Query: 31  MNQPVQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLERE 210
           M  P  +   +VGGLA   DE+ L  AF  FGE+ D K   D+ T + R FGFVTF + +
Sbjct: 1   MASPDVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEK 60

Query: 211 XXXXXXXXXXXXELFGRVLTVNYA 282
                       +L GR +TVN A
Sbjct: 61  SMKDAIEGMNGQDLDGRSITVNEA 84

---

>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated|
           protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor
           SF3b 49 kDa subunit)
          Length = 424

 Score = 56.2 bits (134), Expect = 5e-08
 Identities = 29/79 (36%), Positives = 42/79 (53%)
 Frame = +1

Query: 46  QKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXX 225
           Q  T+YVGGL E+V E +L   F+  G V +   P D+ T +H+ +GFV FL  E     
Sbjct: 11  QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYA 70

Query: 226 XXXXXXXELFGRVLTVNYA 282
                  +L+G+ + VN A
Sbjct: 71  IKIMNMIKLYGKPIRVNKA 89



 Score = 48.9 bits (115), Expect = 8e-06
 Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEV-KDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXX 234
           +++G L  E+DEK+L+  F  FG + +  K   D  T   + + F+ F   +        
Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 161

Query: 235 XXXXELFGRVLTVNYAFPEKIKGGEQGWAAQPVWA 339
                L  R +TV+YAF +  KG   G AA+ + A
Sbjct: 162 MNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLA 196

---

>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2|
          Length = 168

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 33/86 (38%), Positives = 42/86 (48%)
 Frame = +1

Query: 61  YVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXXX 240
           +VGGLA   + + L  AF  FG+V D K   D+ T + R FGFVTF   +          
Sbjct: 11  FVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMN 70

Query: 241 XXELFGRVLTVNYAFPEKIKGGEQGW 318
             EL GR +TVN A      GG  G+
Sbjct: 71  GKELDGRNITVNQAQSRGGGGGGGGY 96

---

>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7|
          Length = 176

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 31/82 (37%), Positives = 42/82 (51%)
 Frame = +1

Query: 61  YVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXXX 240
           +VGGLA   D++ L  AF  +G+V D K   D+ T + R FGFVTF + +          
Sbjct: 11  FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70

Query: 241 XXELFGRVLTVNYAFPEKIKGG 306
             +L GR +TVN A      GG
Sbjct: 71  GQDLDGRSITVNEAQSRGSGGG 92

---

>PPIE_SCHMA (Q26548) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase|
           E) (Rotamase E) (Cyclophilin E)
          Length = 273

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 28/72 (38%), Positives = 41/72 (56%)
 Frame = +1

Query: 148 PLDQATQKHRSFGFVTFLEREXXXXXXXXXXXXELFGRVLTVNYAFPEKIKGGEQGWAAQ 327
           P+D  T+KHR F FV F E E            E+FGR + VN A P +I+   +GW ++
Sbjct: 2   PMDYQTEKHRGFAFVEFEEVEDAMSAIDNMNESEIFGRTIRVNVARPVRIR---EGW-SR 57

Query: 328 PVWADADTWFER 363
           PVW+D + W ++
Sbjct: 58  PVWSD-ENWLKK 68

---

>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)|
          Length = 142

 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 31/72 (43%), Positives = 38/72 (52%)
 Frame = +1

Query: 100 LHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXXXXXELFGRVLTVNY 279
           LH+AF  +GEV + K  LD+ TQ+ R FGFVTF   E            EL GR +TVN 
Sbjct: 3   LHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNE 62

Query: 280 AFPEKIKGGEQG 315
           A     +GG  G
Sbjct: 63  AQSRGGRGGGGG 74

---

>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein|
          Length = 157

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 32/86 (37%), Positives = 40/86 (46%)
 Frame = +1

Query: 61  YVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXXX 240
           +VGGLA     + L  AF  +GE+ D K   D+ T + R FGFVTF              
Sbjct: 11  FVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMN 70

Query: 241 XXELFGRVLTVNYAFPEKIKGGEQGW 318
             EL GR +TVN A      GG  G+
Sbjct: 71  GKELDGRNITVNQAQSRGGGGGGGGY 96

---

>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein|
          Length = 157

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 31/82 (37%), Positives = 42/82 (51%)
 Frame = +1

Query: 61  YVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXXX 240
           +VGGLA   +++ L  AF  FG++ D K   D+ T + R FGFVTF + +          
Sbjct: 9   FVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMN 68

Query: 241 XXELFGRVLTVNYAFPEKIKGG 306
             EL GR +TVN A      GG
Sbjct: 69  GQELDGRNITVNEAQSRGSGGG 90

---

>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)|
          Length = 169

 Score = 53.1 bits (126), Expect = 4e-07
 Identities = 32/85 (37%), Positives = 43/85 (50%)
 Frame = +1

Query: 61  YVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXXX 240
           +VGGLA   +++ L   F  FG+V D K   D+ + + R FGFVTF + +          
Sbjct: 9   FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68

Query: 241 XXELFGRVLTVNYAFPEKIKGGEQG 315
             EL GRV+TVN A      GG  G
Sbjct: 69  GKELDGRVITVNEAQSRGSGGGGGG 93

---

>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA|
          Length = 101

 Score = 52.4 bits (124), Expect = 7e-07
 Identities = 30/84 (35%), Positives = 40/84 (47%)
 Frame = +1

Query: 55  TLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXX 234
           ++YVG L+ +V E  L A F  +G VK V+ P D+ T + R FGFV              
Sbjct: 2   SIYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEA 61

Query: 235 XXXXELFGRVLTVNYAFPEKIKGG 306
               E  GR L VN A P + + G
Sbjct: 62  LDGAEWMGRDLKVNKAKPRENRSG 85

---

>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial|
           precursor (AtGRP2)
          Length = 158

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 28/75 (37%), Positives = 38/75 (50%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           L++GGL+   D+  L  AF  FG+V D K  +D+ T + R FGFV F +           
Sbjct: 37  LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96

Query: 238 XXXELFGRVLTVNYA 282
              EL GR + VN A
Sbjct: 97  DGKELNGRHIRVNPA 111

---

>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein|
           3) (RNPL)
          Length = 157

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 27/79 (34%), Positives = 39/79 (49%)
 Frame = +1

Query: 46  QKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXX 225
           ++  L+VGGL    DE+ L   F  FG + +V    D+ TQ+ R FGF+TF   E     
Sbjct: 4   EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVA 63

Query: 226 XXXXXXXELFGRVLTVNYA 282
                   L GR + V++A
Sbjct: 64  MRAMNGESLDGRQIRVDHA 82

---

>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10|
          Length = 169

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 33/85 (38%), Positives = 42/85 (49%)
 Frame = +1

Query: 61  YVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXXX 240
           +VGGLA    +  L   F  FGEV D K   D+ T + R FGFVTF + +          
Sbjct: 9   FVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMN 68

Query: 241 XXELFGRVLTVNYAFPEKIKGGEQG 315
             EL GR +TVN A   + +GG  G
Sbjct: 69  GKELDGRTITVNEA---QSRGGGGG 90

---

>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein|
           3)
          Length = 153

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 27/79 (34%), Positives = 39/79 (49%)
 Frame = +1

Query: 46  QKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXX 225
           ++  L+VGGL    DE+ L   F  FG + +V    D+ TQ+ R FGF+TF   E     
Sbjct: 4   EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDA 63

Query: 226 XXXXXXXELFGRVLTVNYA 282
                   L GR + V++A
Sbjct: 64  MRAMNGESLDGRQIRVDHA 82

---

>HNRPC_RAT (P17132) Heterogeneous nuclear ribonucleoprotein C (hnRNP C) (hnRNP|
           core protein C) (Fragment)
          Length = 158

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 24/58 (41%), Positives = 37/58 (63%)
 Frame = +1

Query: 37  QPVQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLERE 210
           +PV+K  ++VGGL+ +  E+ +   F  FGEV+ ++ P+D  T K R F F+TF E E
Sbjct: 31  EPVKK--IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEE 86

---

>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)|
           (AU-rich element RNA-binding protein 1)
          Length = 353

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 24/58 (41%), Positives = 37/58 (63%)
 Frame = +1

Query: 37  QPVQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLERE 210
           +PV+K  ++VGGL+ +  E+ +   F  FGEV+ ++ P+D  T K R F F+TF E E
Sbjct: 177 EPVKK--IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEE 232



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 21/51 (41%), Positives = 29/51 (56%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLERE 210
           +++GGL+ +  +K L   F  FG+V D    LD  T + R FGFV F E E
Sbjct: 97  MFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESE 147

---

>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)|
           (AU-rich element RNA-binding protein 1)
          Length = 355

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 24/58 (41%), Positives = 37/58 (63%)
 Frame = +1

Query: 37  QPVQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLERE 210
           +PV+K  ++VGGL+ +  E+ +   F  FGEV+ ++ P+D  T K R F F+TF E E
Sbjct: 179 EPVKK--IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEE 234



 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 22/51 (43%), Positives = 29/51 (56%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLERE 210
           +++GGL+ +  +K L   F  FGEV D    LD  T + R FGFV F E E
Sbjct: 99  MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 149

---

>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)|
           (AU-rich element RNA-binding protein 1)
          Length = 355

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 24/58 (41%), Positives = 37/58 (63%)
 Frame = +1

Query: 37  QPVQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLERE 210
           +PV+K  ++VGGL+ +  E+ +   F  FGEV+ ++ P+D  T K R F F+TF E E
Sbjct: 179 EPVKK--IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEE 234



 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 22/51 (43%), Positives = 29/51 (56%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLERE 210
           +++GGL+ +  +K L   F  FGEV D    LD  T + R FGFV F E E
Sbjct: 99  MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 149

---

>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)|
           (RNA-binding motif protein, X chromosome) (Glycoprotein
           p43)
          Length = 391

 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 27/86 (31%), Positives = 38/86 (44%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           L++GGL  E +EK L A F  +G + +V    D+ T K R F FVTF             
Sbjct: 10  LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69

Query: 238 XXXELFGRVLTVNYAFPEKIKGGEQG 315
               L G+ + V  A     + G +G
Sbjct: 70  NGKSLDGKAIKVEQATKPSFESGRRG 95

---

>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)|
          Length = 386

 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 24/75 (32%), Positives = 38/75 (50%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           ++VG L+ E+  + + AAF PFG + D +   D AT K + +GFV+F  +          
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167

Query: 238 XXXELFGRVLTVNYA 282
               L GR +  N+A
Sbjct: 168 GGQWLGGRQIRTNWA 182



 Score = 33.1 bits (74), Expect = 0.47
 Identities = 16/71 (22%), Positives = 31/71 (43%)
 Frame = +1

Query: 55  TLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXX 234
           T+Y GG+   + E+++   F PFG++ +++   D      + + FV F   E        
Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFSSHESAAHAIVS 268

Query: 235 XXXXELFGRVL 267
                + G V+
Sbjct: 269 VNGTTIEGHVV 279

---

>HNRU2_HUMAN (P07029) Heterogeneous nuclear ribonucleoprotein UP2 (Fragment)|
          Length = 225

 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 23/58 (39%), Positives = 37/58 (63%)
 Frame = +1

Query: 37  QPVQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLERE 210
           +PV+K  ++VGGL+ +  E+ +   F  FGEV+ ++ P+D  T K R F F+TF + E
Sbjct: 169 EPVKK--IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFNQEE 224

---

>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of|
           activating protein 1 and estrogen receptors)
           (Coactivator of AP-1 and ERs) (Transcription coactivator
           CAPER)
          Length = 530

 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 23/74 (31%), Positives = 37/74 (50%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           LYVG L   + E +L   F PFG ++ ++  +D  T + + +GF+TF + E         
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311

Query: 238 XXXELFGRVLTVNY 279
              EL GR + V +
Sbjct: 312 NGFELAGRPMKVGH 325

---

>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular|
           carcinoma protein 1) (Splicing factor HCC1)
          Length = 530

 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 23/74 (31%), Positives = 37/74 (50%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           LYVG L   + E +L   F PFG ++ ++  +D  T + + +GF+TF + E         
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311

Query: 238 XXXELFGRVLTVNY 279
              EL GR + V +
Sbjct: 312 NGFELAGRPMKVGH 325

---

>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein|
           23) (RNA-binding region-containing protein 4) (Splicing
           factor SF2)
          Length = 439

 Score = 48.9 bits (115), Expect = 8e-06
 Identities = 26/83 (31%), Positives = 41/83 (49%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           LYVG L   + E +L   F PFG++ ++    D  T + + +GF+TF + E         
Sbjct: 265 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 324

Query: 238 XXXELFGRVLTVNYAFPEKIKGG 306
              EL GR + V +   E++ GG
Sbjct: 325 NGFELAGRPMRVGHV-TERLDGG 346

---

>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)|
           (RNA-binding motif protein, X chromosome)
          Length = 388

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 26/86 (30%), Positives = 38/86 (44%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           L++GGL  E +EK L A F  +G + ++    D+ T K R F FVTF             
Sbjct: 10  LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDM 69

Query: 238 XXXELFGRVLTVNYAFPEKIKGGEQG 315
               L G+ + V  A     + G +G
Sbjct: 70  NGKSLDGKAIKVEQATKPSFESGRRG 95

---

>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)|
           (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15
           (p15-TIA-1)]
          Length = 386

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 23/75 (30%), Positives = 38/75 (50%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           ++VG L+ ++  + + AAF PFG + D +   D AT K + +GFV+F  +          
Sbjct: 108 VFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167

Query: 238 XXXELFGRVLTVNYA 282
               L GR +  N+A
Sbjct: 168 GGQWLGGRQIRTNWA 182



 Score = 33.5 bits (75), Expect = 0.36
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
 Frame = +1

Query: 31  MNQPVQKN-TLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLER 207
           +NQ    N T+Y GG+   + E+++   F PFG++ +++   D      + + FV F   
Sbjct: 206 VNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSH 259

Query: 208 EXXXXXXXXXXXXELFGRVL 267
           E             + G V+
Sbjct: 260 ESAAHAIVSVNGTTIEGHVV 279

---

>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)|
          Length = 392

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 23/75 (30%), Positives = 39/75 (52%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           ++VG L+ E+  + + +AF PFG++ D +   D AT K + +GFV+F  +          
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175

Query: 238 XXXELFGRVLTVNYA 282
               L GR +  N+A
Sbjct: 176 GGQWLGGRQIRTNWA 190



 Score = 35.0 bits (79), Expect = 0.12
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
 Frame = +1

Query: 31  MNQPVQKN-TLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLER 207
           +NQ   KN T+Y GG+A  + ++++   F PFG++ +++          + + FV F   
Sbjct: 214 VNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIR------VFPEKGYSFVRFSTH 267

Query: 208 EXXXXXXXXXXXXELFGRVL 267
           E             + G V+
Sbjct: 268 ESAAHAIVSVNGTTIEGHVV 287

---

>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)|
          Length = 375

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 23/75 (30%), Positives = 39/75 (52%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           ++VG L+ E+  + + +AF PFG++ D +   D AT K + +GFV+F  +          
Sbjct: 99  VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158

Query: 238 XXXELFGRVLTVNYA 282
               L GR +  N+A
Sbjct: 159 GGQWLGGRQIRTNWA 173



 Score = 35.0 bits (79), Expect = 0.12
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
 Frame = +1

Query: 31  MNQPVQKN-TLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLER 207
           +NQ   KN T+Y GG+A  + ++++   F PFG++ +++          + + FV F   
Sbjct: 197 VNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIR------VFPEKGYSFVRFSTH 250

Query: 208 EXXXXXXXXXXXXELFGRVL 267
           E             + G V+
Sbjct: 251 ESAAHAIVSVNGTTIEGHVV 270

---

>SAP49_SCHPO (O14102) Spliceosome-associated protein 49|
          Length = 335

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 25/83 (30%), Positives = 39/83 (46%)
 Frame = +1

Query: 46  QKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXX 225
           Q  T+Y+G L E+V + IL    +  G V ++  P D+    H  FGF  FL  +     
Sbjct: 9   QDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYA 68

Query: 226 XXXXXXXELFGRVLTVNYAFPEK 294
                  +LFG+ + VN A  ++
Sbjct: 69  CQILNQVKLFGKPIRVNRASQDR 91



 Score = 42.4 bits (98), Expect = 8e-04
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRS--FGFVTFLEREXXXXXXX 231
           L+VG L   VDE++L+  F   G++  VK P     +  RS  +GFV++   E       
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQL--VKAPQVARDENGRSKGYGFVSYDSFETADAAIE 158

Query: 232 XXXXXELFGRVLTVNYAFPEKIKGGEQGWAAQ 327
                 L  + +TV+YAF  + KG   G  A+
Sbjct: 159 AMNNQFLMNKPITVSYAFKREGKGERHGDIAE 190

---

>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor|
          Length = 212

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 30/109 (27%), Positives = 51/109 (46%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           LY+GGL+   DE  L  AF  F  V + +   ++ T + R +GFV F+  +         
Sbjct: 33  LYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAM 92

Query: 238 XXXELFGRVLTVNYAFPEKIKGGEQGWAAQPVWADADTWFERQQQEEEM 384
              EL G  ++VN A         + W + P+  D ++  E +++E +M
Sbjct: 93  NGQELNGFNISVNVA---------KDWPSLPLSLD-ESIEEAEKKENKM 131

---

>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 24/75 (32%), Positives = 39/75 (52%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           L+VGGL+ + +E+ L   F  +G++ +V    D+ TQ+ R FGFVTF   +         
Sbjct: 8   LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query: 238 XXXELFGRVLTVNYA 282
               + GR + V+ A
Sbjct: 68  NGKSVDGRQIRVDQA 82

---

>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 24/75 (32%), Positives = 39/75 (52%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           L+VGGL+ + +E+ L   F  +G++ +V    D+ TQ+ R FGFVTF   +         
Sbjct: 8   LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query: 238 XXXELFGRVLTVNYA 282
               + GR + V+ A
Sbjct: 68  NGKSVDGRQIRVDQA 82

---

>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 24/75 (32%), Positives = 39/75 (52%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           L+VGGL+ + +E+ L   F  +G++ +V    D+ TQ+ R FGFVTF   +         
Sbjct: 8   LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query: 238 XXXELFGRVLTVNYA 282
               + GR + V+ A
Sbjct: 68  NGKSVDGRQIRVDQA 82

---

>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I|
          Length = 297

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 26/77 (33%), Positives = 35/77 (45%)
 Frame = +1

Query: 52  NTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXX 231
           N L+V G+A  + E  L   F  FG V  V+   +  T+  R FGF++F   E       
Sbjct: 101 NDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAID 160

Query: 232 XXXXXELFGRVLTVNYA 282
                E +GRVL V  A
Sbjct: 161 NLNSQEFYGRVLNVQKA 177

---

>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP)
          Length = 172

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 24/75 (32%), Positives = 39/75 (52%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           L+VGGL+ + +E+ L   F  +G++ +V    D+ TQ+ R FGFVTF   +         
Sbjct: 8   LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query: 238 XXXELFGRVLTVNYA 282
               + GR + V+ A
Sbjct: 68  NGKSVDGRQIRVDQA 82

---

>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 24/75 (32%), Positives = 39/75 (52%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           L+VGGL+ + +E+ L   F  +G++ +V    D+ TQ+ R FGFVTF   +         
Sbjct: 8   LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67

Query: 238 XXXELFGRVLTVNYA 282
               + GR + V+ A
Sbjct: 68  NGKSVDGRQIRVDQA 82

---

>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly|
           U-binding splicing factor) (Protein half pint) (PUF60
           homolog)
          Length = 637

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 19/47 (40%), Positives = 28/47 (59%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           +YVG ++ E+ E  +  AF PFG +K +    D  TQKH+ F FV +
Sbjct: 132 VYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEY 178

---

>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)|
          Length = 279

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 27/77 (35%), Positives = 37/77 (48%)
 Frame = +1

Query: 52  NTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXX 231
           N +YVG LA  VD+  L   F   G+V D K   D+ + + R FGFVT+   E       
Sbjct: 194 NRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIE 253

Query: 232 XXXXXELFGRVLTVNYA 282
                +L GR + V+ A
Sbjct: 254 SLDGVDLNGRAIRVSPA 270



 Score = 41.2 bits (95), Expect = 0.002
 Identities = 26/77 (33%), Positives = 33/77 (42%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           ++VG L    D   L   F   G V+ V+   D+ T + R FGFVT   +E         
Sbjct: 89  IFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQF 148

Query: 238 XXXELFGRVLTVNYAFP 288
              EL GR L VN   P
Sbjct: 149 NGYELDGRALRVNSGPP 165

---

>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor|
           (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3)
           (AtRBP33) (RNA-binding protein cp31)
          Length = 329

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 27/84 (32%), Positives = 42/84 (50%)
 Frame = +1

Query: 37  QPVQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXX 216
           +P ++  L+VG LA +V+ + L   F   G V+  +   ++ T + R FGFVT    +  
Sbjct: 145 EPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEA 204

Query: 217 XXXXXXXXXXELFGRVLTVNYAFP 288
                     +L GR+LTVN A P
Sbjct: 205 ETAVEKFNRYDLNGRLLTVNKAAP 228



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 24/75 (32%), Positives = 34/75 (45%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           +YVG L  +VD   L   F   G+V + +   D+ T + R FGFVT  + +         
Sbjct: 246 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISAL 305

Query: 238 XXXELFGRVLTVNYA 282
               L GR + VN A
Sbjct: 306 DGQNLEGRAIRVNVA 320

---

>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)|
          Length = 273

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 27/77 (35%), Positives = 37/77 (48%)
 Frame = +1

Query: 52  NTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXX 231
           N +YVG LA  VD+  L   F   G+V D K   D+ + + R FGFVT+   E       
Sbjct: 188 NRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIE 247

Query: 232 XXXXXELFGRVLTVNYA 282
                +L GR + V+ A
Sbjct: 248 SLDGVDLNGRAIRVSPA 264



 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           ++VG L    D   L   F   G V+ V+   D+ T + R FGFVT   +E         
Sbjct: 89  IFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQF 148

Query: 238 XXXELFGRVLTVNYAFP------EKIKGGEQG 315
              EL GR L VN   P         +GG +G
Sbjct: 149 NGYELDGRALRVNSGPPPEKRENSSFRGGSRG 180

---

>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)|
          Length = 367

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 26/74 (35%), Positives = 35/74 (47%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           ++V  L+ E DE +L   F PFG V +VK   D  T K + FGFVT    +         
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345

Query: 238 XXXELFGRVLTVNY 279
               L  RVL V++
Sbjct: 346 NGYRLGERVLQVSF 359



 Score = 36.2 bits (82), Expect = 0.055
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = +1

Query: 43  VQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLER 207
           ++   LYV GL + + +K +   F  +G +   +  LDQAT   R  GF+ F +R
Sbjct: 122 IRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKR 176



 Score = 29.6 bits (65), Expect = 5.2
 Identities = 17/80 (21%), Positives = 33/80 (41%)
 Frame = +1

Query: 49  KNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXX 228
           K  L V  L + + +    + F   G+++  K   D+ T +   +GFV + +        
Sbjct: 38  KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97

Query: 229 XXXXXXELFGRVLTVNYAFP 288
                 +L  + + V+YA P
Sbjct: 98  NTLNGLKLQTKTIKVSYARP 117

---

>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic|
           cerebellar degeneration-associated antigen)
           (Paraneoplastic limbic encephalitis antigen 21)
          Length = 367

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 26/74 (35%), Positives = 35/74 (47%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           ++V  L+ E DE +L   F PFG V +VK   D  T K + FGFVT    +         
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345

Query: 238 XXXELFGRVLTVNY 279
               L  RVL V++
Sbjct: 346 NGYRLGERVLQVSF 359



 Score = 33.5 bits (75), Expect = 0.36
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +1

Query: 43  VQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLER 207
           ++   LYV GL + + +K +   F  +G +   +  +DQ T   R  GF+ F +R
Sbjct: 122 IRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 176



 Score = 29.6 bits (65), Expect = 5.2
 Identities = 17/80 (21%), Positives = 33/80 (41%)
 Frame = +1

Query: 49  KNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXX 228
           K  L V  L + + +    + F   G+++  K   D+ T +   +GFV + +        
Sbjct: 38  KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97

Query: 229 XXXXXXELFGRVLTVNYAFP 288
                 +L  + + V+YA P
Sbjct: 98  NTLNGLKLQTKTIKVSYARP 117

---

>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (xCIRP)
          Length = 163

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 24/75 (32%), Positives = 37/75 (49%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           L++GGL  E +E  L  AF  +G + +V    D+ T++ R FGFVTF   +         
Sbjct: 7   LFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAM 66

Query: 238 XXXELFGRVLTVNYA 282
               + GR + V+ A
Sbjct: 67  NGKSVDGRQIRVDQA 81

---

>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like|
           neuronal protein 1) (Nervous system-specific RNA-binding
           protein Mel-N1)
          Length = 360

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 27/74 (36%), Positives = 35/74 (47%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           ++V  LA + DE IL   F PFG V +VK   D  T K + FGFVT    +         
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338

Query: 238 XXXELFGRVLTVNY 279
               L  RVL V++
Sbjct: 339 NGYRLGDRVLQVSF 352



 Score = 35.0 bits (79), Expect = 0.12
 Identities = 20/85 (23%), Positives = 37/85 (43%)
 Frame = +1

Query: 34  NQPVQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREX 213
           N    K  L V  L + + ++ L + F   GE++  K   D+ T +   +GFV +++ + 
Sbjct: 33  NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92

Query: 214 XXXXXXXXXXXELFGRVLTVNYAFP 288
                       L  + + V+YA P
Sbjct: 93  AEKAINTLNGLRLQTKTIKVSYARP 117



 Score = 33.5 bits (75), Expect = 0.36
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +1

Query: 43  VQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLER 207
           ++   LYV GL + + +K L   F  +G +   +  +DQ T   R  GF+ F +R
Sbjct: 122 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKR 176

---

>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)|
          Length = 359

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 27/74 (36%), Positives = 35/74 (47%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           ++V  LA + DE IL   F PFG V +VK   D  T K + FGFVT    +         
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337

Query: 238 XXXELFGRVLTVNY 279
               L  RVL V++
Sbjct: 338 NGYRLGDRVLQVSF 351



 Score = 33.5 bits (75), Expect = 0.36
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +1

Query: 43  VQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLER 207
           ++   LYV GL + + +K L   F  +G +   +  +DQ T   R  GF+ F +R
Sbjct: 122 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKR 176



 Score = 32.3 bits (72), Expect = 0.80
 Identities = 19/85 (22%), Positives = 36/85 (42%)
 Frame = +1

Query: 34  NQPVQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREX 213
           N    K  L    L + + ++ L + F   GE++  K   D+ T +   +GFV +++ + 
Sbjct: 33  NTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92

Query: 214 XXXXXXXXXXXELFGRVLTVNYAFP 288
                       L  + + V+YA P
Sbjct: 93  AEKAINTLNGLRLQTKTIKVSYARP 117

---

>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2|
          Length = 359

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 27/74 (36%), Positives = 35/74 (47%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           ++V  LA + DE IL   F PFG V +VK   D  T K + FGFVT    +         
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337

Query: 238 XXXELFGRVLTVNY 279
               L  RVL V++
Sbjct: 338 NGYRLGDRVLQVSF 351



 Score = 35.0 bits (79), Expect = 0.12
 Identities = 20/85 (23%), Positives = 37/85 (43%)
 Frame = +1

Query: 34  NQPVQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREX 213
           N    K  L V  L + + ++ L + F   GE++  K   D+ T +   +GFV +++ + 
Sbjct: 33  NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92

Query: 214 XXXXXXXXXXXELFGRVLTVNYAFP 288
                       L  + + V+YA P
Sbjct: 93  AEKAINTLNGLRLQTKTIKVSYARP 117



 Score = 33.5 bits (75), Expect = 0.36
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +1

Query: 43  VQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLER 207
           ++   LYV GL + + +K L   F  +G +   +  +DQ T   R  GF+ F +R
Sbjct: 122 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKR 176

---

>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like|
           neuronal protein 1) (Nervous system-specific RNA-binding
           protein Hel-N1)
          Length = 359

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 27/74 (36%), Positives = 35/74 (47%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           ++V  LA + DE IL   F PFG V +VK   D  T K + FGFVT    +         
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337

Query: 238 XXXELFGRVLTVNY 279
               L  RVL V++
Sbjct: 338 NGYRLGDRVLQVSF 351



 Score = 35.0 bits (79), Expect = 0.12
 Identities = 20/85 (23%), Positives = 37/85 (43%)
 Frame = +1

Query: 34  NQPVQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREX 213
           N    K  L V  L + + ++ L + F   GE++  K   D+ T +   +GFV +++ + 
Sbjct: 33  NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92

Query: 214 XXXXXXXXXXXELFGRVLTVNYAFP 288
                       L  + + V+YA P
Sbjct: 93  AEKAINTLNGLRLQTKTIKVSYARP 117



 Score = 33.5 bits (75), Expect = 0.36
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +1

Query: 43  VQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLER 207
           ++   LYV GL + + +K L   F  +G +   +  +DQ T   R  GF+ F +R
Sbjct: 122 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKR 176

---

>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1|
          Length = 346

 Score = 45.4 bits (106), Expect = 9e-05
 Identities = 24/52 (46%), Positives = 30/52 (57%)
 Frame = +1

Query: 43  VQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           V    LYV G+ E+  E +L   F  +G V   +  LD+ATQK R FGFVTF
Sbjct: 111 VSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTF 162



 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = +1

Query: 37  QPVQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           +P     ++VGGL     + ++   +  FGE+ D+    D  T++ R FGFVTF
Sbjct: 18  EPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTF 71

---

>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)|
           (CArG-binding factor-A) (CBF-A)
          Length = 285

 Score = 45.4 bits (106), Expect = 9e-05
 Identities = 22/57 (38%), Positives = 34/57 (59%)
 Frame = +1

Query: 40  PVQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLERE 210
           PV+K  ++VGGL  E  E+ +   F  FGE++ ++ P+D    K R F F+TF E +
Sbjct: 157 PVKK--IFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEED 211



 Score = 40.4 bits (93), Expect = 0.003
 Identities = 19/47 (40%), Positives = 27/47 (57%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           ++VGGL+ +  +K L   F  FGEV D    +D  T + R FGF+ F
Sbjct: 77  MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF 123

---

>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor|
          Length = 324

 Score = 45.4 bits (106), Expect = 9e-05
 Identities = 29/93 (31%), Positives = 42/93 (45%)
 Frame = +1

Query: 34  NQPVQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREX 213
           ++ V+   LYVG L   +    L   F   G V +V+   D+ T + R F FVT    E 
Sbjct: 108 SESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEE 167

Query: 214 XXXXXXXXXXXELFGRVLTVNYAFPEKIKGGEQ 312
                      ++ GR + VN  FPE  +GGE+
Sbjct: 168 AKEAIRLFDGSQVGGRTVKVN--FPEVPRGGER 198



 Score = 36.6 bits (83), Expect = 0.042
 Identities = 23/75 (30%), Positives = 32/75 (42%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           LYV  L+  +  + L  AF         K   D+++ + R FGF+TF   E         
Sbjct: 219 LYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTM 278

Query: 238 XXXELFGRVLTVNYA 282
              EL GR L +N A
Sbjct: 279 NEVELEGRPLRLNVA 293

---

>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)|
          Length = 362

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 24/79 (30%), Positives = 40/79 (50%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           +++GGL+ +  ++ L   F  FGEVK+     D  T++ R FGFVTF++ +         
Sbjct: 22  MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD-QAGVDKVLAQ 80

Query: 238 XXXELFGRVLTVNYAFPEK 294
              EL  + +    AFP +
Sbjct: 81  SRHELDSKTIDPKVAFPRR 99



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 24/80 (30%), Positives = 39/80 (48%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           ++VGGL+     + +   F  FG+V D     D+ T +HR FGFVTF E E         
Sbjct: 111 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF-ESEDIVEKVCEI 169

Query: 238 XXXELFGRVLTVNYAFPEKI 297
              E+  +++    A P+++
Sbjct: 170 HFHEINNKMVECKKAQPKEV 189

---

>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)|
          Length = 362

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 24/79 (30%), Positives = 40/79 (50%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           +++GGL+ +  ++ L   F  FGEVK+     D  T++ R FGFVTF++ +         
Sbjct: 22  MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD-QAGVDKVLAQ 80

Query: 238 XXXELFGRVLTVNYAFPEK 294
              EL  + +    AFP +
Sbjct: 81  SRHELDSKTIDPKVAFPRR 99



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 24/80 (30%), Positives = 39/80 (48%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           ++VGGL+     + +   F  FG+V D     D+ T +HR FGFVTF E E         
Sbjct: 111 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF-ESEDIVEKVCEI 169

Query: 238 XXXELFGRVLTVNYAFPEKI 297
              E+  +++    A P+++
Sbjct: 170 HFHEINNKMVECKKAQPKEV 189

---

>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)|
          Length = 362

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 24/79 (30%), Positives = 40/79 (50%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           +++GGL+ +  ++ L   F  FGEVK+     D  T++ R FGFVTF++ +         
Sbjct: 22  MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD-QAGVDKVLAQ 80

Query: 238 XXXELFGRVLTVNYAFPEK 294
              EL  + +    AFP +
Sbjct: 81  SRHELDSKTIDPKVAFPRR 99



 Score = 42.4 bits (98), Expect = 8e-04
 Identities = 24/80 (30%), Positives = 39/80 (48%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           ++VGGL+     + +   F  FG+V D     D+ T +HR FGFVTF E E         
Sbjct: 111 IFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF-ESEDIVEKVCEI 169

Query: 238 XXXELFGRVLTVNYAFPEKI 297
              E+  +++    A P+++
Sbjct: 170 HFHEINNKMVECKKAQPKEV 189

---

>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in|
           azoospermia-associated protein 1) (Proline-rich Vg1
           mRNA-binding protein)
          Length = 360

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 6/109 (5%)
 Frame = +1

Query: 46  QKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXX 225
           + N ++VGG+     E  L   F  FG V +V    D   Q+ R FGF+TF E E     
Sbjct: 112 RSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITF-EDEQSVDQ 170

Query: 226 XXXXXXXELFGRVLTVNYAFPEKIKG------GEQGWAAQPVWADADTW 354
                  ++ G+ + V  A P   K       G   W ++ + + A+ W
Sbjct: 171 AVNMHFHDIMGKKVEVKRAEPRDSKSQTPGPPGSNQWGSRAMQSTANGW 219



 Score = 38.1 bits (87), Expect = 0.015
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           L+VGGL     ++ L + F  +GEV D     D+ T + R FGFV F
Sbjct: 12  LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKF 58

---

>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis|
           antigen HuD) (Hu-antigen D)
          Length = 373

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 29/86 (33%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
 Frame = +1

Query: 31  MNQPVQKNT---LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFL 201
           MN P    T   ++V  L+ + DE +L   F PFG V +VK   D  T K + FGFVT  
Sbjct: 280 MNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMT 339

Query: 202 EREXXXXXXXXXXXXELFGRVLTVNY 279
             +             L  RVL V++
Sbjct: 340 NYDEAAMAIASLNGYRLGDRVLQVSF 365



 Score = 33.9 bits (76), Expect = 0.28
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +1

Query: 43  VQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLER 207
           ++   LYV GL + + +K L   F  +G +   +  +DQ T   R  GF+ F +R
Sbjct: 122 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 176



 Score = 33.5 bits (75), Expect = 0.36
 Identities = 18/80 (22%), Positives = 35/80 (43%)
 Frame = +1

Query: 49  KNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXX 228
           K  L V  L + + ++   + F   GE++  K   D+ T +   +GFV +++ +      
Sbjct: 38  KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97

Query: 229 XXXXXXELFGRVLTVNYAFP 288
                  L  + + V+YA P
Sbjct: 98  NTLNGLRLQTKTIKVSYARP 117

---

>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis|
           antigen HuD) (Hu-antigen D)
          Length = 385

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 29/86 (33%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
 Frame = +1

Query: 31  MNQPVQKNT---LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFL 201
           MN P    T   ++V  L+ + DE +L   F PFG V +VK   D  T K + FGFVT  
Sbjct: 292 MNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMT 351

Query: 202 EREXXXXXXXXXXXXELFGRVLTVNY 279
             +             L  RVL V++
Sbjct: 352 NYDEAAMAIASLNGYRLGDRVLQVSF 377



 Score = 33.9 bits (76), Expect = 0.28
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +1

Query: 43  VQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLER 207
           ++   LYV GL + + +K L   F  +G +   +  +DQ T   R  GF+ F +R
Sbjct: 134 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 188



 Score = 33.5 bits (75), Expect = 0.36
 Identities = 18/80 (22%), Positives = 35/80 (43%)
 Frame = +1

Query: 49  KNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXX 228
           K  L V  L + + ++   + F   GE++  K   D+ T +   +GFV +++ +      
Sbjct: 50  KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 109

Query: 229 XXXXXXELFGRVLTVNYAFP 288
                  L  + + V+YA P
Sbjct: 110 NTLNGLRLQTKTIKVSYARP 129

---

>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis|
           antigen HuD) (Hu-antigen D)
          Length = 380

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 29/86 (33%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
 Frame = +1

Query: 31  MNQPVQKNT---LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFL 201
           MN P    T   ++V  L+ + DE +L   F PFG V +VK   D  T K + FGFVT  
Sbjct: 287 MNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMT 346

Query: 202 EREXXXXXXXXXXXXELFGRVLTVNY 279
             +             L  RVL V++
Sbjct: 347 NYDEAAMAIASLNGYRLGDRVLQVSF 372



 Score = 33.9 bits (76), Expect = 0.28
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +1

Query: 43  VQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLER 207
           ++   LYV GL + + +K L   F  +G +   +  +DQ T   R  GF+ F +R
Sbjct: 129 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 183



 Score = 33.5 bits (75), Expect = 0.36
 Identities = 18/80 (22%), Positives = 35/80 (43%)
 Frame = +1

Query: 49  KNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXX 228
           K  L V  L + + ++   + F   GE++  K   D+ T +   +GFV +++ +      
Sbjct: 45  KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 104

Query: 229 XXXXXXELFGRVLTVNYAFP 288
                  L  + + V+YA P
Sbjct: 105 NTLNGLRLQTKTIKVSYARP 124

---

>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)|
          Length = 276

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 27/84 (32%), Positives = 40/84 (47%)
 Frame = +1

Query: 37  QPVQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXX 216
           +P +   L+VG L  ++D + L   F   G V+  +   ++ T + R FGFVT    E  
Sbjct: 92  EPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEA 151

Query: 217 XXXXXXXXXXELFGRVLTVNYAFP 288
                     +L GR+LTVN A P
Sbjct: 152 DKAVELYSQYDLNGRLLTVNKAAP 175



 Score = 39.3 bits (90), Expect = 0.007
 Identities = 21/75 (28%), Positives = 32/75 (42%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           +YVG +  ++D+  L   F   G+V   +   D+ + + R FGFVT              
Sbjct: 193 IYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANL 252

Query: 238 XXXELFGRVLTVNYA 282
               L GR + VN A
Sbjct: 253 DGQTLDGRTIRVNAA 267

---

>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)|
          Length = 233

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 27/85 (31%), Positives = 41/85 (48%)
 Frame = +1

Query: 34  NQPVQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREX 213
           ++P ++  L+VG L  +VD + L   F   G V+  +   ++ T + R FGFVT    E 
Sbjct: 49  SEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEE 108

Query: 214 XXXXXXXXXXXELFGRVLTVNYAFP 288
                      ++ GR LTVN A P
Sbjct: 109 AEKAVELLNGYDMDGRQLTVNKAAP 133



 Score = 40.0 bits (92), Expect = 0.004
 Identities = 24/75 (32%), Positives = 31/75 (41%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           +YVG L  +VD   L   F   G+V   +   D+ T + R FGFVT              
Sbjct: 151 VYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAAL 210

Query: 238 XXXELFGRVLTVNYA 282
               L GR + VN A
Sbjct: 211 DGQTLDGRAVRVNVA 225

---

>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in|
           azoospermia-associated protein 1)
          Length = 407

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 6/109 (5%)
 Frame = +1

Query: 46  QKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXX 225
           + N ++VGG+     E  L   F  FG V +V    D   Q+ R FGF+TF E E     
Sbjct: 111 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITF-EDEQSVDQ 169

Query: 226 XXXXXXXELFGRVLTVNYAFPEKIKG------GEQGWAAQPVWADADTW 354
                  ++ G+ + V  A P   K       G   W ++ V   A+ W
Sbjct: 170 AVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAANGW 218



 Score = 38.1 bits (87), Expect = 0.015
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           L+VGGL     ++ L + F  +GEV D     D+ T + R FGFV F
Sbjct: 12  LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKF 58

---

>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like|
           generic protein) (MelG)
          Length = 326

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 24/74 (32%), Positives = 35/74 (47%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           +++  L ++ DE IL   F PFG V +VK   D  T K + FGFVT    E         
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEESAMAIASL 305

Query: 238 XXXELFGRVLTVNY 279
               L  ++L V++
Sbjct: 306 NGYRLGDKILQVSF 319



 Score = 32.7 bits (73), Expect = 0.61
 Identities = 18/82 (21%), Positives = 34/82 (41%)
 Frame = +1

Query: 43  VQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXX 222
           + +  L V  L + + ++ L + F   GEV+  K   D+       +GFV ++  +    
Sbjct: 17  IGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAER 76

Query: 223 XXXXXXXXELFGRVLTVNYAFP 288
                    L  + + V+YA P
Sbjct: 77  AISTLNGLRLQSKTIKVSYARP 98



 Score = 31.6 bits (70), Expect = 1.4
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = +1

Query: 34  NQPVQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLER 207
           ++ ++   LY+ GL   + +K +   F  FG + + +  +DQ T   R   F+ F +R
Sbjct: 100 SEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKR 157

---

>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)|
          Length = 326

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 24/74 (32%), Positives = 35/74 (47%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           +++  L ++ DE IL   F PFG V +VK   D  T K + FGFVT    E         
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305

Query: 238 XXXELFGRVLTVNY 279
               L  ++L V++
Sbjct: 306 NGYRLGDKILQVSF 319



 Score = 31.6 bits (70), Expect = 1.4
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = +1

Query: 34  NQPVQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLER 207
           ++ ++   LY+ GL   + +K +   F  FG + + +  +DQ T   R   F+ F +R
Sbjct: 100 SEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKR 157



 Score = 31.6 bits (70), Expect = 1.4
 Identities = 18/82 (21%), Positives = 33/82 (40%)
 Frame = +1

Query: 43  VQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXX 222
           + +  L V  L + + +  L + F   GEV+  K   D+       +GFV ++  +    
Sbjct: 17  IGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAER 76

Query: 223 XXXXXXXXELFGRVLTVNYAFP 288
                    L  + + V+YA P
Sbjct: 77  AINTLNGLRLQSKTIKVSYARP 98

---

>RB97D_DROME (Q02926) Ribonucleoprotein RB97D|
          Length = 471

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 22/47 (46%), Positives = 27/47 (57%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           L+VGGL +  DE+ L   F+ FG V  VK   D+ T K R F FV F
Sbjct: 125 LFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEF 171



 Score = 40.0 bits (92), Expect = 0.004
 Identities = 19/47 (40%), Positives = 29/47 (61%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           L++GGLA    E+ L   +  +G+V DV    D AT++ R FGF+T+
Sbjct: 34  LFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITY 80

---

>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in|
           azoospermia-associated protein 1)
          Length = 406

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 28/97 (28%), Positives = 39/97 (40%)
 Frame = +1

Query: 46  QKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXX 225
           + N ++VGG+     E  L   F  FG V +V    D   Q+ R FGF+TF E E     
Sbjct: 111 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITF-EDEQSVDQ 169

Query: 226 XXXXXXXELFGRVLTVNYAFPEKIKGGEQGWAAQPVW 336
                  ++ G+ + V  A P   K    G      W
Sbjct: 170 AVNMHFHDIMGKKVEVKRAEPRDSKNQAPGQPGASQW 206



 Score = 38.1 bits (87), Expect = 0.015
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           L+VGGL     ++ L + F  +GEV D     D+ T + R FGFV F
Sbjct: 12  LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKF 58

---

>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)|
          Length = 328

 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 24/80 (30%), Positives = 40/80 (50%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           ++VGGL+     + +   F  FG+V+D     D+ T +HR FGFVTF E E         
Sbjct: 112 IFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTF-ENEDVVEKVCEI 170

Query: 238 XXXELFGRVLTVNYAFPEKI 297
              E+  +++    A P+++
Sbjct: 171 HFHEINNKMVECKKAQPKEV 190



 Score = 40.4 bits (93), Expect = 0.003
 Identities = 22/79 (27%), Positives = 36/79 (45%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           +++GGL+ +     L   F  FGE+++     D  T++ R FGFVTF +           
Sbjct: 23  MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFAD-PASVDKVLGQ 81

Query: 238 XXXELFGRVLTVNYAFPEK 294
              EL  + +    AFP +
Sbjct: 82  PHHELDSKTIDPKVAFPRR 100

---

>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)|
          Length = 346

 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 24/80 (30%), Positives = 40/80 (50%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           ++VGGL+     + +   F  FG+V+D     D+ T +HR FGFVTF E E         
Sbjct: 112 IFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTF-ENEDVVEKVCEI 170

Query: 238 XXXELFGRVLTVNYAFPEKI 297
              E+  +++    A P+++
Sbjct: 171 HFHEINNKMVECKKAQPKEV 190



 Score = 40.4 bits (93), Expect = 0.003
 Identities = 22/79 (27%), Positives = 36/79 (45%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           +++GGL+ +     L   F  FGE+++     D  T++ R FGFVTF +           
Sbjct: 23  MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFAD-PASVDKVLGQ 81

Query: 238 XXXELFGRVLTVNYAFPEK 294
              EL  + +    AFP +
Sbjct: 82  PHHELDSKTIDPKVAFPRR 100

---

>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP|
           A1) (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1)
          Length = 365

 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 20/59 (33%), Positives = 33/59 (55%)
 Frame = +1

Query: 34  NQPVQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLERE 210
           N+P Q   L++GGL+ E  ++ L   F  +G + D     D  +++ R FGFVT+L  +
Sbjct: 8   NEPEQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTD 66



 Score = 39.3 bits (90), Expect = 0.007
 Identities = 16/51 (31%), Positives = 31/51 (60%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLERE 210
           ++VGG+ E+ +E  L   F  +G+++ ++   D+ + K R F FVTF + +
Sbjct: 107 IFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHD 157

---

>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)|
           (hnRNP 48) (HRP48.1)
          Length = 421

 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 26/84 (30%), Positives = 39/84 (46%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           +++GGL   V E  L   F  +G+V +V    DQ  +K R FGF++F E E         
Sbjct: 98  VFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSF-EEESSVEHVTNE 156

Query: 238 XXXELFGRVLTVNYAFPEKIKGGE 309
               L G+ + +  A P    GG+
Sbjct: 157 RYINLNGKQVEIKKAEPRDGSGGQ 180



 Score = 38.1 bits (87), Expect = 0.015
 Identities = 18/53 (33%), Positives = 30/53 (56%)
 Frame = +1

Query: 46  QKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLE 204
           ++  L+VGGL+ E  ++ L   F  FG++ D     +  + + R FGFVTF +
Sbjct: 5   ERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFAD 57

---

>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein|
           11)
          Length = 281

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 26/77 (33%), Positives = 36/77 (46%)
 Frame = +1

Query: 55  TLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXX 234
           T++VG L   V E+IL+  F+  G +  V    D+   K +SFGFV F   E        
Sbjct: 11  TVFVGNLEARVREEILYELFLQAGPLTKVTICKDREG-KPKSFGFVCFKHPESVSYAIAL 69

Query: 235 XXXXELFGRVLTVNYAF 285
                L+GR + V Y F
Sbjct: 70  LNGIRLYGRPINVQYRF 86

---

>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)|
          Length = 292

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 25/77 (32%), Positives = 36/77 (46%)
 Frame = +1

Query: 52  NTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXX 231
           N +YVG L+  VD+  L   F   G V D K   D+ + + R FGFVT+   +       
Sbjct: 208 NRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAID 267

Query: 232 XXXXXELFGRVLTVNYA 282
                +L GR + V+ A
Sbjct: 268 SLNGIDLDGRSIRVSAA 284



 Score = 40.4 bits (93), Expect = 0.003
 Identities = 24/73 (32%), Positives = 33/73 (45%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           L+VG L   VD   L   F   G V+ V+   D+ + + R FGFVT   +E         
Sbjct: 90  LFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQF 149

Query: 238 XXXELFGRVLTVN 276
              E+ GR + VN
Sbjct: 150 NGYEIDGRAIRVN 162

---

>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)|
          Length = 291

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 25/77 (32%), Positives = 36/77 (46%)
 Frame = +1

Query: 52  NTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXX 231
           N +YVG L+  VD+  L   F   G V D K   D+ + + R FGFVT+   +       
Sbjct: 207 NRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAID 266

Query: 232 XXXXXELFGRVLTVNYA 282
                +L GR + V+ A
Sbjct: 267 SLNGVDLDGRSIRVSAA 283



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 25/73 (34%), Positives = 33/73 (45%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           L+VG L   VD   L   F   G V+ V+   D+ T + R FGFVT   +E         
Sbjct: 89  LFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQF 148

Query: 238 XXXELFGRVLTVN 276
              E+ GR + VN
Sbjct: 149 NGYEIDGRAIRVN 161

---

>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)|
           (APOBEC-1-binding protein 1) (ABBP-1)
          Length = 331

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
 Frame = +1

Query: 40  PVQKNTLYVGGL-AEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLERE 210
           PV+K  ++VGGL  E   E+ +   F  FGE++ ++ P+D    K R F F+TF E E
Sbjct: 150 PVKK--IFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEE 205



 Score = 40.4 bits (93), Expect = 0.003
 Identities = 19/47 (40%), Positives = 27/47 (57%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           ++VGGL+ +  +K L   F  FGEV D    +D  T + R FGF+ F
Sbjct: 70  MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF 116

---

>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2|
           (hnRNP A2(B))
          Length = 358

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 18/51 (35%), Positives = 31/51 (60%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLERE 210
           L+VGG+ E+ +E  L   F  +G+++  +   D+ + K R FGFVTF + +
Sbjct: 102 LFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHD 152



 Score = 39.7 bits (91), Expect = 0.005
 Identities = 19/51 (37%), Positives = 30/51 (58%)
 Frame = +1

Query: 46  QKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           Q   L++GGL+ E  E+ L   +  +G++ D     D A+++ R FGFVTF
Sbjct: 7   QFRKLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTF 57

---

>RU17_YEAST (Q00916) U1 small nuclear ribonucleoprotein 70 kDa homolog|
          Length = 300

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 17/48 (35%), Positives = 30/48 (62%)
 Frame = +1

Query: 55  TLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           T+++G L  ++DE  L   FV FGE++ ++   D+ TQK + + F+ F
Sbjct: 108 TIFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVF 155

---

>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear|
           ribonucleoprotein 40) (HNRNP 40)
          Length = 344

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           ++VGGL  E+ ++ +   F  FG + +V+ P D+   + + F F+TF + E         
Sbjct: 138 IFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITF-DSEQVVTDLLKT 196

Query: 238 XXXELFGRVLTVNYAFPE---KIKGGEQG 315
              ++ G+ + V  A P+   ++ GG +G
Sbjct: 197 PKQKIAGKEVDVKRATPKPENQMMGGMRG 225



 Score = 40.8 bits (94), Expect = 0.002
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLERE 210
           L+VGGL+ E  EK L   F  +GE++ +    D  T + R F F+ F   E
Sbjct: 58  LFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTE 108

---

>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member|
           A1 (RNA-binding motif protein 1)
          Length = 496

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 25/83 (30%), Positives = 36/83 (43%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           L++GGL  E +EK+L A F   G + +V    D+ T K R F F+TF             
Sbjct: 10  LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68

Query: 238 XXXELFGRVLTVNYAFPEKIKGG 306
               L G+ + V  A     + G
Sbjct: 69  NGKSLHGKAIKVEQAKKPSFQSG 91

---

>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor|
          Length = 315

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 26/82 (31%), Positives = 39/82 (47%)
 Frame = +1

Query: 37  QPVQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXX 216
           +P +   L+VG L  +VD + L   F   G V+  +   ++ T + R FGFVT    E  
Sbjct: 131 EPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEA 190

Query: 217 XXXXXXXXXXELFGRVLTVNYA 282
                     ++ GR+LTVN A
Sbjct: 191 EKAVEMYNRYDVNGRLLTVNKA 212



 Score = 40.4 bits (93), Expect = 0.003
 Identities = 23/79 (29%), Positives = 32/79 (40%)
 Frame = +1

Query: 46  QKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXX 225
           Q   +YVG +   +D+  L   F   G+V   +   D+ T + R FGFVT          
Sbjct: 228 QSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDA 287

Query: 226 XXXXXXXELFGRVLTVNYA 282
                   L GR + VN A
Sbjct: 288 IANLDGQSLDGRTIRVNVA 306

---

>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand RNA-binding
           protein) (hnRNP core protein A1)
          Length = 371

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 19/54 (35%), Positives = 31/54 (57%)
 Frame = +1

Query: 37  QPVQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           +P Q   L++GGL+ E  ++ L + F  +G + D     D  T++ R FGFVT+
Sbjct: 8   EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 61



 Score = 38.5 bits (88), Expect = 0.011
 Identities = 16/47 (34%), Positives = 29/47 (61%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           ++VGG+ E+ +E  L   F  +G+++ ++   D+ + K R F FVTF
Sbjct: 106 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 152

---

>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor|
           (RNA-binding protein cp29)
          Length = 342

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
 Frame = +1

Query: 40  PVQKNT------LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFL 201
           PV++N+      L+VG L+  VD   L   F   G V+ V+   D+ T + R FGFVT  
Sbjct: 89  PVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMS 148

Query: 202 EREXXXXXXXXXXXXELFGRVLTVNYAFP 288
                          E  GR L VN   P
Sbjct: 149 TAAEVEAAAQQFNGYEFEGRPLRVNAGPP 177



 Score = 38.9 bits (89), Expect = 0.009
 Identities = 23/77 (29%), Positives = 36/77 (46%)
 Frame = +1

Query: 52  NTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXX 231
           N LYVG L+  VD+  L   F   G+V + +   D+ + + + FGFVT    +       
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316

Query: 232 XXXXXELFGRVLTVNYA 282
                +L GR + V+ A
Sbjct: 317 SLNGADLDGRQIRVSEA 333

---

>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog|
          Length = 342

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 5/157 (3%)
 Frame = +1

Query: 37  QPVQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXX 216
           +P     L++GGL     ++ L   F  +GE+ DV    D  T++ R FGF+T+  R   
Sbjct: 12  EPEHVRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITY-SRAHM 70

Query: 217 XXXXXXXXXXELFGRVLTVNYAFPE-KIKGGEQGWAAQPVWADADTWFERQQQEEEMKRL 393
                     ++ GRV+    A P  +I   E G   + ++       + + +E +++  
Sbjct: 71  VDDAQNARPHKVDGRVVEPKRAVPRTEIGRPEAGATVKKLFVGG---IKEEMEENDLRDY 127

Query: 394 QTEQNAAMKEAERLHREKVAAEKNG----ETDEADPM 492
             +    +  A  +  +K   +K G    E D+ DP+
Sbjct: 128 FKQYGTVVSAA--IVVDKETRKKRGFAFVEFDDYDPV 162

---

>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /|
           hnRNP B1)
          Length = 353

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 18/47 (38%), Positives = 29/47 (61%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           L+VGG+ E+ +E  L   F  +G++  ++   D+ + K R FGFVTF
Sbjct: 114 LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 160



 Score = 39.3 bits (90), Expect = 0.007
 Identities = 19/51 (37%), Positives = 30/51 (58%)
 Frame = +1

Query: 46  QKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           Q   L++GGL+ E  E+ L   +  +G++ D     D A+++ R FGFVTF
Sbjct: 19  QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTF 69

---

>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand RNA-binding
           protein) (hnRNP core protein A1) (Unwinding protein 1)
           (UP1) (Fragment)
          Length = 195

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 19/54 (35%), Positives = 31/54 (57%)
 Frame = +1

Query: 37  QPVQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           +P Q   L++GGL+ E  ++ L + F  +G + D     D  T++ R FGFVT+
Sbjct: 8   EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 61



 Score = 38.5 bits (88), Expect = 0.011
 Identities = 16/47 (34%), Positives = 29/47 (61%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           ++VGG+ E+ +E  L   F  +G+++ ++   D+ + K R F FVTF
Sbjct: 106 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 152

---

>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /|
           hnRNP B1)
          Length = 341

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 18/47 (38%), Positives = 29/47 (61%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           L+VGG+ E+ +E  L   F  +G++  ++   D+ + K R FGFVTF
Sbjct: 102 LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 148



 Score = 39.3 bits (90), Expect = 0.007
 Identities = 19/51 (37%), Positives = 30/51 (58%)
 Frame = +1

Query: 46  QKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           Q   L++GGL+ E  E+ L   +  +G++ D     D A+++ R FGFVTF
Sbjct: 7   QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTF 57

---

>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand RNA-binding
           protein) (hnRNP core protein A1) (HDP)
          Length = 319

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 19/54 (35%), Positives = 31/54 (57%)
 Frame = +1

Query: 37  QPVQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           +P Q   L++GGL+ E  ++ L + F  +G + D     D  T++ R FGFVT+
Sbjct: 8   EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 61



 Score = 38.5 bits (88), Expect = 0.011
 Identities = 16/47 (34%), Positives = 29/47 (61%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           ++VGG+ E+ +E  L   F  +G+++ ++   D+ + K R F FVTF
Sbjct: 106 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 152

---

>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1) (HDP-1)
           (Topoisomerase-inhibitor suppressed)
          Length = 319

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 19/54 (35%), Positives = 31/54 (57%)
 Frame = +1

Query: 37  QPVQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           +P Q   L++GGL+ E  ++ L + F  +G + D     D  T++ R FGFVT+
Sbjct: 8   EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 61



 Score = 38.5 bits (88), Expect = 0.011
 Identities = 16/47 (34%), Positives = 29/47 (61%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           ++VGG+ E+ +E  L   F  +G+++ ++   D+ + K R F FVTF
Sbjct: 106 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 152

---

>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1)
          Length = 319

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 19/54 (35%), Positives = 31/54 (57%)
 Frame = +1

Query: 37  QPVQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           +P Q   L++GGL+ E  ++ L + F  +G + D     D  T++ R FGFVT+
Sbjct: 8   EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 61



 Score = 38.5 bits (88), Expect = 0.011
 Identities = 16/47 (34%), Positives = 29/47 (61%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           ++VGG+ E+ +E  L   F  +G+++ ++   D+ + K R F FVTF
Sbjct: 106 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 152

---

>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1|
           (hnRNP A3(A))
          Length = 373

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 19/54 (35%), Positives = 30/54 (55%)
 Frame = +1

Query: 37  QPVQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           +P Q   L++GGL+ E  +  L   F  +G++ D     D  T++ R FGFVT+
Sbjct: 22  EPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTY 75



 Score = 35.0 bits (79), Expect = 0.12
 Identities = 15/47 (31%), Positives = 28/47 (59%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           ++VGG+ E+ +E  L      +G+++ ++   D+ + K R F FVTF
Sbjct: 120 IFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVTF 166

---

>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2|
           (hnRNP A3(B))
          Length = 385

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 19/54 (35%), Positives = 30/54 (55%)
 Frame = +1

Query: 37  QPVQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           +P Q   L++GGL+ E  +  L   F  +G++ D     D  T++ R FGFVT+
Sbjct: 22  EPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTY 75



 Score = 37.7 bits (86), Expect = 0.019
 Identities = 16/47 (34%), Positives = 29/47 (61%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           ++VGG+ E+ +E  L   F  +G+++ ++   D+ + K R F FVTF
Sbjct: 120 IFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTF 166

---

>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1|
           protein) (Protein P11)
          Length = 385

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 19/47 (40%), Positives = 27/47 (57%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           L+VGGL ++ DE+ L   F  FG++  V    D+ T K R F F+ F
Sbjct: 117 LFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEF 163



 Score = 40.4 bits (93), Expect = 0.003
 Identities = 19/56 (33%), Positives = 30/56 (53%)
 Frame = +1

Query: 31  MNQPVQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           + +P Q   L++GGL     +  L A F  +G + DV    D  T++ R FGF+T+
Sbjct: 17  ITEPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITY 72

---

>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)|
           binding protein) (ePABP)
          Length = 629

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 25/84 (29%), Positives = 37/84 (44%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           +Y+    E++D+K L   F  FG    VK  +D  T + R FGFV +   E         
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEM 251

Query: 238 XXXELFGRVLTVNYAFPEKIKGGE 309
              E+ GR++ V  A     + GE
Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQGE 275



 Score = 30.0 bits (66), Expect = 4.0
 Identities = 20/71 (28%), Positives = 30/71 (42%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           LYV  L + +D+  L   F P+G +   K   +    K   FGFV F   E         
Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHSK--GFGFVCFSSPE-----EATK 348

Query: 238 XXXELFGRVLT 270
              E+ GR+++
Sbjct: 349 AVTEMNGRIVS 359

---

>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core|
           protein A1-A) (PEN repeat clone P9)
          Length = 365

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 23/79 (29%), Positives = 40/79 (50%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           L+VG L ++ DE+ +   F  FG + D+   +D+ T K R F FV F + +         
Sbjct: 124 LFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYD-PVDKVVLQ 182

Query: 238 XXXELFGRVLTVNYAFPEK 294
              +L G+++ V  A P++
Sbjct: 183 KQHQLNGKMVDVKKALPKQ 201



 Score = 40.0 bits (92), Expect = 0.004
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = +1

Query: 31  MNQPVQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           + +P     L++GGL     ++ L A F  +G + DV    D  T++ R FGF+T+
Sbjct: 24  ITEPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITY 79

---

>FCA_ARATH (O04425) Flowering time control protein FCA|
          Length = 747

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           L+VG L ++  EK +   F+ FG V+DV    D+  Q  R  GFV +  +E         
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQS-RGCGFVKYSSKETAMAAIDGL 271

Query: 238 XXXELF---GRVLTVNYAFPEKIKGGEQGWAAQPV 333
                     + L V +A P++ K GE    A PV
Sbjct: 272 NGTYTMRGCNQPLIVRFAEPKRPKPGESREMAPPV 306

---

>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)|
          Length = 414

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 21/88 (23%), Positives = 38/88 (43%)
 Frame = +1

Query: 52  NTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXX 231
           +TL++G L+   D   +   F   GEV  V+ P    T++ + FG+V F   E       
Sbjct: 267 DTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALD 326

Query: 232 XXXXXELFGRVLTVNYAFPEKIKGGEQG 315
                 +  R + ++++ P     G +G
Sbjct: 327 ALQGEYIDNRPVRLDFSSPRPNNDGGRG 354

---

>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1)
          Length = 295

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 19/52 (36%), Positives = 32/52 (61%)
 Frame = +1

Query: 43  VQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           +  NT++VGG+   +DE  + + F  +G VK+VK   D+ T   + +GFV+F
Sbjct: 37  IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSF 87

---

>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1) (DAZ homolog)
           (SPGY-like-autosomal)
          Length = 295

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 19/52 (36%), Positives = 32/52 (61%)
 Frame = +1

Query: 43  VQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           +  NT++VGG+   +DE  + + F  +G VK+VK   D+ T   + +GFV+F
Sbjct: 37  IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSF 87

---

>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast|
           precursor
          Length = 289

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 22/77 (28%), Positives = 38/77 (49%)
 Frame = +1

Query: 52  NTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXX 231
           N +YVG L+  VD+  L + F   G+V + +   D+ + + + FGFVT+   +       
Sbjct: 204 NRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIK 263

Query: 232 XXXXXELFGRVLTVNYA 282
                +L GR + V+ A
Sbjct: 264 SLDGADLDGRQIRVSEA 280



 Score = 39.7 bits (91), Expect = 0.005
 Identities = 30/91 (32%), Positives = 38/91 (41%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           L+VG L   VD   L   F   G V+ V+   D+ T + R FGFVT              
Sbjct: 93  LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152

Query: 238 XXXELFGRVLTVNYAFPEKIKGGEQGWAAQP 330
              EL GR L VN   P   +  E G++  P
Sbjct: 153 NGYELDGRPLRVNAGPPPPKR--EDGFSRGP 181

---

>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)|
          Length = 379

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = +1

Query: 37  QPVQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           +P Q   L++GGL+ E  +  L   F  +G + D     D  T++ R FGFVT+
Sbjct: 30  EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83



 Score = 38.1 bits (87), Expect = 0.015
 Identities = 16/47 (34%), Positives = 29/47 (61%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           ++VGG+ E+ +E  L   F  +G+++ ++   D+ + K R F FVTF
Sbjct: 128 IFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTF 174

---

>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)|
          Length = 379

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = +1

Query: 37  QPVQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           +P Q   L++GGL+ E  +  L   F  +G + D     D  T++ R FGFVT+
Sbjct: 30  EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83



 Score = 38.1 bits (87), Expect = 0.015
 Identities = 16/47 (34%), Positives = 29/47 (61%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           ++VGG+ E+ +E  L   F  +G+++ ++   D+ + K R F FVTF
Sbjct: 128 IFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTF 174

---

>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)|
          Length = 483

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 21/74 (28%), Positives = 34/74 (45%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           +++  LA E +E  L   F PFG V+ VK   D  T + + +GFV+    +         
Sbjct: 404 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 463

Query: 238 XXXELFGRVLTVNY 279
               +  RVL V++
Sbjct: 464 NGYTMGNRVLQVSF 477



 Score = 28.9 bits (63), Expect = 8.9
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQ-KHRSFGFVTFLERE 210
           LYV GL + + ++ L A F PFG +   +   +     + +  GF+ F +RE
Sbjct: 250 LYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKRE 301

---

>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)|
          Length = 378

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = +1

Query: 37  QPVQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           +P Q   L++GGL+ E  +  L   F  +G + D     D  T++ R FGFVT+
Sbjct: 30  EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83



 Score = 38.1 bits (87), Expect = 0.015
 Identities = 16/47 (34%), Positives = 29/47 (61%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           ++VGG+ E+ +E  L   F  +G+++ ++   D+ + K R F FVTF
Sbjct: 128 IFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTF 174

---

>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)|
          Length = 519

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 21/74 (28%), Positives = 34/74 (45%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           +++  LA E +E  L   F PFG V+ VK   D  T + + +GFV+    +         
Sbjct: 440 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 499

Query: 238 XXXELFGRVLTVNY 279
               +  RVL V++
Sbjct: 500 NGYTMGNRVLQVSF 513



 Score = 28.9 bits (63), Expect = 8.9
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQ-KHRSFGFVTFLERE 210
           LYV GL + + ++ L A F PFG +   +   +     + +  GF+ F +RE
Sbjct: 286 LYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKRE 337

---

>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein|
           PUB1 (ARS consensus-binding protein ACBP-60)
           (Poly(U)-binding protein) (Poly uridylate-binding
           protein)
          Length = 452

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 23/75 (30%), Positives = 33/75 (44%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           L+VG L   VD++ L  AF  F          D  T   R +GFV+F  ++         
Sbjct: 163 LFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSM 222

Query: 238 XXXELFGRVLTVNYA 282
              +L GR L +N+A
Sbjct: 223 QGQDLNGRPLRINWA 237

---

>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1)
          Length = 298

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 19/52 (36%), Positives = 32/52 (61%)
 Frame = +1

Query: 43  VQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           +  NT++VGG+   +DE  + + F  +G VK+VK   D+ T   + +GFV+F
Sbjct: 37  IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSF 87

---

>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1)
          Length = 296

 Score = 39.3 bits (90), Expect = 0.007
 Identities = 19/52 (36%), Positives = 31/52 (59%)
 Frame = +1

Query: 43  VQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           +  NT++VGG+   +DE  +   F  +G VK+VK   D+ T   + +GFV+F
Sbjct: 37  IMPNTVFVGGIDVRMDETEIRGFFARYGSVKEVKIITDR-TGVSKGYGFVSF 87

---

>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1|
           (hnRNP A2(A))
          Length = 346

 Score = 39.3 bits (90), Expect = 0.007
 Identities = 17/47 (36%), Positives = 28/47 (59%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           L+VGG+ E+ +E  L   F  +G++  ++   D+ + K R F FVTF
Sbjct: 102 LFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTF 148



 Score = 38.5 bits (88), Expect = 0.011
 Identities = 19/51 (37%), Positives = 29/51 (56%)
 Frame = +1

Query: 46  QKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           Q   L++GGL+ E  E+ L   +  +G + D     D A+++ R FGFVTF
Sbjct: 7   QFRKLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTF 57

---

>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2|
          Length = 322

 Score = 38.9 bits (89), Expect = 0.009
 Identities = 31/151 (20%), Positives = 64/151 (42%), Gaps = 12/151 (7%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           +++GGL  E+ E  +   F  +GE+ ++    D+ T K + F F+ + ++          
Sbjct: 38  IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97

Query: 238 XXXELFGRVLTV----NYAFPEKIKG--------GEQGWAAQPVWADADTWFERQQQEEE 381
              ++ GR + V    NY  P+  +          E+G  A+          E ++  ++
Sbjct: 98  NGIKIKGRTIRVDHVSNYRAPKDSEEIDDVTRQLQEKGCGARTPSPSLSESSEDEKPTKK 157

Query: 382 MKRLQTEQNAAMKEAERLHREKVAAEKNGET 474
            K+ + E+    KE E+  RE  A + +  +
Sbjct: 158 HKKDKKEKKKKKKEKEKADREVQAEQPSSSS 188

---

>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1|
          Length = 632

 Score = 38.9 bits (89), Expect = 0.009
 Identities = 19/51 (37%), Positives = 28/51 (54%)
 Frame = +1

Query: 55  TLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLER 207
           T++VGGLA  + EK L   F PFG + ++K P        +  GFV + E+
Sbjct: 298 TVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFG------KGCGFVQYSEK 342

---

>DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)|
          Length = 289

 Score = 38.9 bits (89), Expect = 0.009
 Identities = 19/54 (35%), Positives = 34/54 (62%)
 Frame = +1

Query: 43  VQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLE 204
           +  NT++VGG+   ++E  + + F  +G VK+VK   D+ T   + +GFV+FL+
Sbjct: 33  IMPNTVFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDR-TGVSKGYGFVSFLD 85

---

>YNL0_YEAST (P53927) Hypothetical 25.4 kDa protein in CYB5-LEU4 intergenic|
           region
          Length = 220

 Score = 38.5 bits (88), Expect = 0.011
 Identities = 21/72 (29%), Positives = 33/72 (45%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           +YV  L     EK L   F  FG++K+V+   ++ T   R +GF+ F+ +E         
Sbjct: 93  IYVSRLPHGFHEKELSKYFAQFGDLKEVRLARNKKTGNSRHYGFLEFVNKEDAMIAQESM 152

Query: 238 XXXELFGRVLTV 273
               L G +L V
Sbjct: 153 NNYLLMGHLLQV 164

---

>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast|
           precursor (PSRP-2)
          Length = 260

 Score = 38.5 bits (88), Expect = 0.011
 Identities = 23/75 (30%), Positives = 32/75 (42%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           +Y+G LA+ V  ++L   F   G+V   K      T K   FGFV+F   E         
Sbjct: 186 VYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQAL 245

Query: 238 XXXELFGRVLTVNYA 282
               L G+ + VN A
Sbjct: 246 NNSVLEGQKIRVNKA 260

---

>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic|
           poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A)
          Length = 629

 Score = 38.5 bits (88), Expect = 0.011
 Identities = 22/75 (29%), Positives = 34/75 (45%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           +Y+    E++D+K L   F  FG    VK  +D  + + R FGFV +   E         
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVSEM 251

Query: 238 XXXELFGRVLTVNYA 282
              E+ GR++ V  A
Sbjct: 252 NGKEVNGRMIYVGRA 266



 Score = 31.2 bits (69), Expect = 1.8
 Identities = 20/71 (28%), Positives = 31/71 (43%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           LYV  L + +D+  L   F+P+G +   K   +    K   FGFV F   E         
Sbjct: 296 LYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGGHSK--GFGFVCFSSPE-----EATK 348

Query: 238 XXXELFGRVLT 270
              E+ GR+++
Sbjct: 349 AVTEMNGRIVS 359

---

>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1|
           (Single-stranded DNA-binding protein MSSP-1)
          Length = 403

 Score = 38.5 bits (88), Expect = 0.011
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +1

Query: 43  VQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           + K  LY+ GL     ++ L     P+G++   K  LD+AT K + +GFV F
Sbjct: 59  LSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDF 110

---

>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein|
           4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP)
           (Activated-platelet protein 1) (APP-1)
          Length = 644

 Score = 38.5 bits (88), Expect = 0.011
 Identities = 22/75 (29%), Positives = 35/75 (46%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           +Y+    EEVD++ L   F  FG+   VK   D    K + FGFV++ + E         
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEM 251

Query: 238 XXXELFGRVLTVNYA 282
              E+ G+++ V  A
Sbjct: 252 NGKEISGKIIFVGRA 266



 Score = 35.0 bits (79), Expect = 0.12
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLERE 210
           LY+  L + +D++ L   F PFG +   K  L+    K   FGFV F   E
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSK--GFGFVCFSSPE 344

---

>RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interacting protein 2|
          Length = 383

 Score = 38.1 bits (87), Expect = 0.015
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +1

Query: 34  NQPVQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           N  + K  LY+ GL     ++ L     P+G++   K  LD+ T K + +GFV F
Sbjct: 52  NDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDF 106

---

>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic|
           poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B)
          Length = 629

 Score = 38.1 bits (87), Expect = 0.015
 Identities = 24/84 (28%), Positives = 37/84 (44%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           +Y+    E++D+K L   F  FG    VK  +D  + + R FGFV +   E         
Sbjct: 193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEM 251

Query: 238 XXXELFGRVLTVNYAFPEKIKGGE 309
              E+ GR++ V  A     + GE
Sbjct: 252 NGKEVNGRMVYVGRAQKRIERQGE 275



 Score = 30.0 bits (66), Expect = 4.0
 Identities = 20/71 (28%), Positives = 30/71 (42%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           LYV  L + +D+  L   F P+G +   K   +    K   FGFV F   E         
Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEGGHSK--GFGFVCFSSPE-----EATK 348

Query: 238 XXXELFGRVLT 270
              E+ GR+++
Sbjct: 349 AVTEMNGRIVS 359

---

>RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interacting protein 2|
           (Suppressor of CDC2 with RNA-binding motif 3)
          Length = 407

 Score = 38.1 bits (87), Expect = 0.015
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +1

Query: 34  NQPVQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           N  + K  LY+ GL     ++ L     P+G++   K  LD+ T K + +GFV F
Sbjct: 50  NDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDF 104

---

>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage|
           factor IB) (CFIB)
          Length = 534

 Score = 37.7 bits (86), Expect = 0.019
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           +++GGL  +  E  L   F  +G V D+K   D AT + R FGF++F
Sbjct: 161 MFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSF 207



 Score = 37.0 bits (84), Expect = 0.033
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           ++VGG+  +V  K     F  +G + D +  LD+ T + R FGFVT+
Sbjct: 245 IFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTY 291

---

>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA|
           binding protein SEB4) (CLL-associated antigen KW-5)
          Length = 216

 Score = 37.7 bits (86), Expect = 0.019
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = +1

Query: 46  QKNT----LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLER 207
           QK+T    ++VGGL     +  L   F  FG++++     D+ T K R +GFVT  +R
Sbjct: 5   QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADR 62

---

>DAZ1_HUMAN (Q9NQZ3) Deleted in azoospermia protein 1|
          Length = 744

 Score = 37.4 bits (85), Expect = 0.025
 Identities = 18/50 (36%), Positives = 31/50 (62%)
 Frame = +1

Query: 52  NTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFL 201
           NT++VGG+   +DE  + + F  +G VK+VK  +   T   + +GFV+F+
Sbjct: 370 NTVFVGGIDARMDETEIGSCFGRYGSVKEVKI-ITNRTGVSKGYGFVSFV 418



 Score = 37.4 bits (85), Expect = 0.025
 Identities = 18/50 (36%), Positives = 31/50 (62%)
 Frame = +1

Query: 52  NTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFL 201
           NT++VGG+   +DE  + + F  +G VK+VK  +   T   + +GFV+F+
Sbjct: 205 NTVFVGGIDARMDETEIGSCFGRYGSVKEVKI-ITNRTGVSKGYGFVSFV 253



 Score = 37.4 bits (85), Expect = 0.025
 Identities = 18/50 (36%), Positives = 31/50 (62%)
 Frame = +1

Query: 52  NTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFL 201
           NT++VGG+   +DE  + + F  +G VK+VK  +   T   + +GFV+F+
Sbjct: 40  NTVFVGGIDARMDETEIGSCFGRYGSVKEVKI-ITNRTGVSKGYGFVSFV 88

---

>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding|
           protein SEB4)
          Length = 237

 Score = 37.4 bits (85), Expect = 0.025
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLER 207
           ++VGGL     +  L   F  FG++++     D+ T K R +GFVT  +R
Sbjct: 34  IFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADR 83

---

>DAZ4_HUMAN (Q86SG3) Deleted in azoospermia protein 4|
          Length = 579

 Score = 37.4 bits (85), Expect = 0.025
 Identities = 18/50 (36%), Positives = 31/50 (62%)
 Frame = +1

Query: 52  NTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFL 201
           NT++VGG+   +DE  + + F  +G VK+VK  +   T   + +GFV+F+
Sbjct: 205 NTVFVGGIDARMDETEIGSCFGRYGSVKEVKI-ITNRTGVSKGYGFVSFV 253



 Score = 37.4 bits (85), Expect = 0.025
 Identities = 18/50 (36%), Positives = 31/50 (62%)
 Frame = +1

Query: 52  NTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFL 201
           NT++VGG+   +DE  + + F  +G VK+VK  +   T   + +GFV+F+
Sbjct: 40  NTVFVGGIDARMDETEIGSCFGRYGSVKEVKI-ITNRTGVSKGYGFVSFV 88

---

>DAZ3_HUMAN (Q9NR90) Deleted in azoospermia protein 3|
          Length = 486

 Score = 37.4 bits (85), Expect = 0.025
 Identities = 18/50 (36%), Positives = 31/50 (62%)
 Frame = +1

Query: 52  NTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFL 201
           NT++VGG+   +DE  + + F  +G VK+VK  +   T   + +GFV+F+
Sbjct: 40  NTVFVGGIDARMDETEIGSCFGRYGSVKEVKI-ITNRTGVSKGYGFVSFV 88

---

>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein|
           19)
          Length = 952

 Score = 37.4 bits (85), Expect = 0.025
 Identities = 23/81 (28%), Positives = 36/81 (44%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           L+V  L+    E+ L   F  +G + ++  P+D  T+K + F FVTF+  E         
Sbjct: 402 LFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEV 461

Query: 238 XXXELFGRVLTVNYAFPEKIK 300
                 GR+L   +  P  IK
Sbjct: 462 DGQVFQGRML---HVLPSTIK 479



 Score = 36.2 bits (82), Expect = 0.055
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
 Frame = +1

Query: 58   LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQA-TQKHRSFGFVTFL-EREXXXXXXX 231
            + V  +  + +++ +   F  FGE+K V+ P     T  HR FGFV F+ +++       
Sbjct: 826  ILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNA 885

Query: 232  XXXXXELFGRVLTVNYAFPE 291
                  L+GR L + +A  E
Sbjct: 886  LCHSTHLYGRRLVLEWADSE 905

---

>MY18A_MOUSE (Q9JMH9) Myosin-18A (Myosin XVIIIa) (Myosin containing PDZ domain)|
            (Molecule associated with JAK3 N-terminus) (MAJN)
          Length = 2035

 Score = 37.4 bits (85), Expect = 0.025
 Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 6/55 (10%)
 Frame = +1

Query: 340  DADTWFERQQQEEEMKRLQTEQNAAMKEAERLHREKV------AAEKNGETDEAD 486
            DA+T  ER + E+EMK LQT+ +A  K+ E +  E +      AAE NGE D+ D
Sbjct: 1309 DAET-AERLRTEKEMKELQTQYDALKKQMEVMEMEVMEARLIRAAEINGEVDDDD 1362

---

>MY18A_HUMAN (Q92614) Myosin-18A (Myosin XVIIIa) (Myosin containing PDZ domain)|
            (Molecule associated with JAK3 N-terminus) (MAJN)
          Length = 2054

 Score = 37.4 bits (85), Expect = 0.025
 Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 6/55 (10%)
 Frame = +1

Query: 340  DADTWFERQQQEEEMKRLQTEQNAAMKEAERLHREKV------AAEKNGETDEAD 486
            DA+T  ER + E+EMK LQT+ +A  K+ E +  E +      AAE NGE D+ D
Sbjct: 1313 DAET-AERLRAEKEMKELQTQYDALKKQMEVMEMEVMEARLIRAAEINGEVDDDD 1366

---

>DAZ2_HUMAN (Q13117) Deleted in azoospermia protein 2|
          Length = 558

 Score = 37.4 bits (85), Expect = 0.025
 Identities = 18/50 (36%), Positives = 31/50 (62%)
 Frame = +1

Query: 52  NTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFL 201
           NT++VGG+   +DE  + + F  +G VK+VK  +   T   + +GFV+F+
Sbjct: 40  NTVFVGGIDARMDETEIGSCFGRYGSVKEVKI-ITNRTGVSKGYGFVSFV 88

---

>IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 subunit 4|
           (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit)
           (eIF3 p42) (Eif3p42) (eIF3g)
          Length = 320

 Score = 37.4 bits (85), Expect = 0.025
 Identities = 21/78 (26%), Positives = 33/78 (42%)
 Frame = +1

Query: 55  TLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXX 234
           T+ V  L+E+  E  L   F PFG +  +    D+ T + + F F++F  RE        
Sbjct: 240 TIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAG 299

Query: 235 XXXXELFGRVLTVNYAFP 288
                    +L V +A P
Sbjct: 300 VSGFGYDHLILNVEWAKP 317

---

>IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 subunit 4|
           (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit)
           (eIF3 p42) (eIF3g)
          Length = 320

 Score = 37.4 bits (85), Expect = 0.025
 Identities = 21/78 (26%), Positives = 33/78 (42%)
 Frame = +1

Query: 55  TLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXX 234
           T+ V  L+E+  E  L   F PFG +  +    D+ T + + F F++F  RE        
Sbjct: 240 TIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAG 299

Query: 235 XXXXELFGRVLTVNYAFP 288
                    +L V +A P
Sbjct: 300 VSGFGYDHLILNVEWAKP 317

---

>RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interacting protein 1|
           (Single-stranded DNA-binding protein MSSP-1) (Suppressor
           of CDC2 with RNA-binding motif 2)
          Length = 406

 Score = 37.0 bits (84), Expect = 0.033
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +1

Query: 43  VQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           + K  LY+ GL     ++ L     P+G++   K  LD+ T K + +GFV F
Sbjct: 59  LSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDF 110

---

>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein|
           19)
          Length = 960

 Score = 37.0 bits (84), Expect = 0.033
 Identities = 36/156 (23%), Positives = 58/156 (37%)
 Frame = +1

Query: 46  QKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXX 225
           +   L+V  L     E+ L   F  +G + ++  P+D  T+K + F F+TF+  E     
Sbjct: 400 ESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKA 459

Query: 226 XXXXXXXELFGRVLTVNYAFPEKIKGGEQGWAAQPVWADADTWFERQQQEEEMKRLQTEQ 405
                     GR+L   +  P  IK                     ++  E+   L +  
Sbjct: 460 YSEVDGQVFQGRML---HVLPSTIK---------------------KEASEDASALGSSS 495

Query: 406 NAAMKEAERLHREKVAAEKNGETDEADPMAVAEAQA 513
               KEA+   +   A+  N  T    P AVA+A A
Sbjct: 496 YKKKKEAQ--DKANSASSHNWNTLFMGPNAVADAIA 529



 Score = 35.4 bits (80), Expect = 0.095
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = +1

Query: 58   LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQA-TQKHRSFGFVTFL-EREXXXXXXX 231
            + V  +  +   + +   F  FGE+K V+ P     T  HR FGFV FL +++       
Sbjct: 834  ILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNA 893

Query: 232  XXXXXELFGRVLTVNYAFPE 291
                  L+GR L + +A  E
Sbjct: 894  LCHSTHLYGRRLVLEWADSE 913

---

>GAR2_SCHPO (P41891) Protein gar2|
          Length = 500

 Score = 37.0 bits (84), Expect = 0.033
 Identities = 16/49 (32%), Positives = 29/49 (59%)
 Frame = +1

Query: 52  NTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           +T++VG L+    E  L  AF   G+++ ++ P D  + + + FG+VTF
Sbjct: 366 DTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTF 414



 Score = 37.0 bits (84), Expect = 0.033
 Identities = 18/78 (23%), Positives = 38/78 (48%)
 Frame = +1

Query: 55  TLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXX 234
           T++VG L+  VD++ L   F  +G +   +  +D  + + + +G+V F   E        
Sbjct: 264 TVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAA 323

Query: 235 XXXXELFGRVLTVNYAFP 288
               E+ GR++ ++ + P
Sbjct: 324 NGTKEIDGRMVNLDLSNP 341

---

>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)|
          Length = 305

 Score = 36.6 bits (83), Expect = 0.042
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           L++GGL  +  E  L   F  FG + D    ++  T++ R FGFVT+
Sbjct: 9   LFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTY 55



 Score = 35.4 bits (80), Expect = 0.095
 Identities = 20/47 (42%), Positives = 26/47 (55%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           L+VGGL  +V E  L   F  FG V+  +   D+ + K R FGFV F
Sbjct: 100 LFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYF 146

---

>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)|
          Length = 282

 Score = 36.6 bits (83), Expect = 0.042
 Identities = 24/85 (28%), Positives = 35/85 (41%)
 Frame = +1

Query: 40  PVQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXX 219
           P     L V GL+    E+ L   F  +G +  V    DQ T + R F FV F   +   
Sbjct: 115 PDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSK 174

Query: 220 XXXXXXXXXELFGRVLTVNYAFPEK 294
                    EL GR + V+Y+  ++
Sbjct: 175 EAMERANGMELDGRRIRVDYSITKR 199

---

>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)|
          Length = 281

 Score = 36.6 bits (83), Expect = 0.042
 Identities = 24/85 (28%), Positives = 35/85 (41%)
 Frame = +1

Query: 40  PVQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXX 219
           P     L V GL+    E+ L   F  +G +  V    DQ T + R F FV F   +   
Sbjct: 113 PDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSK 172

Query: 220 XXXXXXXXXELFGRVLTVNYAFPEK 294
                    EL GR + V+Y+  ++
Sbjct: 173 EAMERANGMELDGRRIRVDYSITKR 197

---

>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 428

 Score = 36.6 bits (83), Expect = 0.042
 Identities = 36/143 (25%), Positives = 58/143 (40%), Gaps = 1/143 (0%)
 Frame = +1

Query: 49  KNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXX 228
           K +++VG L   VDE  L   F+  G +  V+   +  T   R FG+V F E        
Sbjct: 284 KRSVFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLF-ENTDAVHLA 342

Query: 229 XXXXXXELFGRVLTVNYAF-PEKIKGGEQGWAAQPVWADADTWFERQQQEEEMKRLQTEQ 405
                 EL GR L V  +   EK+K      + +   + +        +E +       +
Sbjct: 343 LKLNNSELMGRKLRVMRSVNKEKLKQQNSNPSVKKDGSKSKQRLNFTSKEGK----SHSK 398

Query: 406 NAAMKEAERLHREKVAAEKNGET 474
           NA + E   L ++K   +K G+T
Sbjct: 399 NAFIGEKAVLMKKKKGQKKKGQT 421

---

>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2|
          Length = 326

 Score = 36.2 bits (82), Expect = 0.055
 Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           ++VGGL  E+ E  +   F  +GE+ ++    D+ T K + F F+ + ++          
Sbjct: 38  IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97

Query: 238 XXXELFGRVLTV----NYAFPEK 294
              ++ GR + V    NY  P++
Sbjct: 98  NGIKIKGRTIRVDHVSNYRAPQE 120

---

>DAZL_BRARE (Q9YGW7) Deleted in azoospermia-like (DAZ-like protein) (zDazl)|
          Length = 229

 Score = 36.2 bits (82), Expect = 0.055
 Identities = 20/51 (39%), Positives = 29/51 (56%)
 Frame = +1

Query: 52  NTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLE 204
           NTL+VGG+  +VDE  +   F  +G VK+VK  +       + +GFV F E
Sbjct: 47  NTLFVGGIDMKVDENEIREFFAKYGSVKEVKI-ITYRGGICKGYGFVYFSE 96

---

>HSH49_YEAST (Q99181) Protein HSH49|
          Length = 213

 Score = 35.8 bits (81), Expect = 0.072
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +1

Query: 52  NTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           NT+YVG +   + ++ L+  F+    V  +K P D+  Q ++ + F+ F
Sbjct: 9   NTVYVGNIDPRITKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIEF 57

---

>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear|
           (Poly(A)-binding protein) (PABP) (ARS consensus-binding
           protein ACBP-67) (Polyadenylate tail-binding protein)
          Length = 576

 Score = 35.8 bits (81), Expect = 0.072
 Identities = 19/76 (25%), Positives = 32/76 (42%)
 Frame = +1

Query: 55  TLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXX 234
           +LYVG L   V E  L+  F P G V  ++   D  T+    + +V F + E        
Sbjct: 38  SLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQ 97

Query: 235 XXXXELFGRVLTVNYA 282
                + GR+  + ++
Sbjct: 98  LNYTPIKGRLCRIMWS 113



 Score = 32.0 bits (71), Expect = 1.0
 Identities = 21/75 (28%), Positives = 31/75 (41%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           L+V  L + VD++ L   F P+G +   K  +     K + FGFV F   E         
Sbjct: 323 LFVKNLDDSVDDEKLEEEFAPYGTITSAKV-MRTENGKSKGFGFVCFSTPEEATKAITEK 381

Query: 238 XXXELFGRVLTVNYA 282
               + G+ L V  A
Sbjct: 382 NQQIVAGKPLYVAIA 396

---

>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PABP 2)
          Length = 629

 Score = 35.4 bits (80), Expect = 0.095
 Identities = 21/76 (27%), Positives = 33/76 (43%)
 Frame = +1

Query: 55  TLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXX 234
           +LYVG L   V +  L  AF   G V  V+   D  T++   +G+V F   +        
Sbjct: 37  SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96

Query: 235 XXXXELFGRVLTVNYA 282
                L+G+ + V Y+
Sbjct: 97  LNYIPLYGKPIRVMYS 112

---

>NAM8_YEAST (Q00539) Protein NAM8|
          Length = 523

 Score = 35.4 bits (80), Expect = 0.095
 Identities = 19/51 (37%), Positives = 29/51 (56%)
 Frame = +1

Query: 55  TLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLER 207
           T+++GGL+  V E  L A F PFG +  VK P+ +        GFV +++R
Sbjct: 314 TVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCC------GFVQYVDR 358

---

>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 430

 Score = 35.4 bits (80), Expect = 0.095
 Identities = 22/75 (29%), Positives = 34/75 (45%)
 Frame = +1

Query: 49  KNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXX 228
           K +++VG L  +V+E  +   F+  G +  V+   D+ T   + FG+V F E        
Sbjct: 286 KRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLF-ENTDSVHLA 344

Query: 229 XXXXXXELFGRVLTV 273
                 EL GR L V
Sbjct: 345 LKLNNSELMGRKLRV 359

---

>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein|
           3) (PABP 3) (Testis-specific poly(A)-binding protein)
          Length = 631

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 19/51 (37%), Positives = 26/51 (50%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLERE 210
           LYV  L + +D++ L  AF PFG +   K  ++    K   FGFV F   E
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPE 344

---

>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1|
          Length = 833

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 18/72 (25%), Positives = 32/72 (44%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           L++  L     E  L + F PFG+++ V  P+D+ T   + F ++ F + +         
Sbjct: 325 LFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLEL 384

Query: 238 XXXELFGRVLTV 273
                 GR+L V
Sbjct: 385 DAKPFQGRLLHV 396

---

>RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-rich 1|
           (RNA-binding protein srp-5) (CeSRp75)
          Length = 312

 Score = 34.7 bits (78), Expect = 0.16
 Identities = 23/86 (26%), Positives = 39/86 (45%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           +Y+G L   V EK +   F  +G+++DV             FGFV F ++          
Sbjct: 5   IYIGRLTSRVSEKDIEHFFRGYGQIRDVLL--------KNGFGFVEFDDKRDAEDAVHDL 56

Query: 238 XXXELFGRVLTVNYAFPEKIKGGEQG 315
              EL G  + ++Y+ P +  GG++G
Sbjct: 57  NGKELGGERVILDYSKP-RGGGGDRG 81

---

>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)|
           (PABP)
          Length = 634

 Score = 34.7 bits (78), Expect = 0.16
 Identities = 22/70 (31%), Positives = 31/70 (44%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           LYV  L + +D+  L  AF P+G +   K   D+   + + FGFV F             
Sbjct: 289 LYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDE-EGRSKGFGFVCF-----NAASEATC 342

Query: 238 XXXELFGRVL 267
              EL GRV+
Sbjct: 343 AVTELNGRVV 352



 Score = 31.6 bits (70), Expect = 1.4
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           +YV    E+ D++ L   F P+G++   K  + +   K + FGFV F
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKV-MSKEDGKSKGFGFVAF 230

---

>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3|
           subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding
           subunit) (eIF3g)
          Length = 256

 Score = 34.7 bits (78), Expect = 0.16
 Identities = 22/80 (27%), Positives = 33/80 (41%)
 Frame = +1

Query: 49  KNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXX 228
           +NT  V  L +E++E  L   F   G V  +    D+ T   + F FVTF  R+      
Sbjct: 175 ENTCRVTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAI 234

Query: 229 XXXXXXELFGRVLTVNYAFP 288
                  ++  VL V +  P
Sbjct: 235 AELNDIRMYHMVLKVEWTRP 254

---

>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)|
           (RNA-binding protein BRUNOL-2) (Deadenylation factor
           CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein
           F41)
          Length = 486

 Score = 34.7 bits (78), Expect = 0.16
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           L++  L +E  ++ L   F+PFG V   K  +D+ T   + FGFV++
Sbjct: 403 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSY 449

---

>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)|
           (RNA-binding protein BRUNOL-2) (Deadenylation factor
           CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding
           protein) (EDEN-BP)
          Length = 486

 Score = 34.7 bits (78), Expect = 0.16
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           L++  L +E  ++ L   F+PFG V   K  +D+ T   + FGFV++
Sbjct: 403 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSY 449

---

>TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)|
          Length = 414

 Score = 34.7 bits (78), Expect = 0.16
 Identities = 18/57 (31%), Positives = 31/57 (54%)
 Frame = +1

Query: 34  NQPVQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLE 204
           ++P++   ++VG   E++ E  L   F  +G+V DV  P     +  R+F FVTF +
Sbjct: 185 DEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIP-----KPFRAFAFVTFAD 236



 Score = 34.3 bits (77), Expect = 0.21
 Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +1

Query: 31  MNQPVQKNT-LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLER 207
           + + VQK + L V GL  +  E+ L   F  FGEV  V+   D  T   + FGFV F E 
Sbjct: 96  VKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEY 155

Query: 208 E 210
           E
Sbjct: 156 E 156

---

>G3B2_MOUSE (P97379) Ras-GTPase-activating protein-binding protein 2 (GAP|
           SH3-domain-binding protein 2) (G3BP-2)
          Length = 482

 Score = 34.7 bits (78), Expect = 0.16
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLERE 210
           L+VG L  ++DE  L   F+ FG V +++        K  +FGFV F + E
Sbjct: 333 LFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSE 383

---

>G3B2_HUMAN (Q9UN86) Ras-GTPase-activating protein-binding protein 2 (GAP|
           SH3-domain-binding protein 2) (G3BP-2)
          Length = 482

 Score = 34.7 bits (78), Expect = 0.16
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLERE 210
           L+VG L  ++DE  L   F+ FG V +++        K  +FGFV F + E
Sbjct: 333 LFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSE 383

---

>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome|
           II
          Length = 473

 Score = 34.3 bits (77), Expect = 0.21
 Identities = 20/53 (37%), Positives = 30/53 (56%)
 Frame = +1

Query: 52  NTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLERE 210
           +T++VGGL++ V E+ L   F  FGE+  VK P        +  GFV F+ R+
Sbjct: 303 STVFVGGLSKFVSEEELKYLFQNFGEIVYVKIP------PGKGCGFVQFVNRQ 349

---

>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 34.3 bits (77), Expect = 0.21
 Identities = 20/75 (26%), Positives = 35/75 (46%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           ++V  + +++D++ L   F  +G  + VK   D A+ K + FGFV +   E         
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDL 259

Query: 238 XXXELFGRVLTVNYA 282
               + G+VL V  A
Sbjct: 260 HGKSIDGKVLYVGRA 274

---

>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 34.3 bits (77), Expect = 0.21
 Identities = 20/75 (26%), Positives = 35/75 (46%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           ++V  + +++D++ L   F  +G  + VK   D A+ K + FGFV +   E         
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDL 259

Query: 238 XXXELFGRVLTVNYA 282
               + G+VL V  A
Sbjct: 260 HGKSIDGKVLYVGRA 274

---

>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 34.3 bits (77), Expect = 0.21
 Identities = 20/75 (26%), Positives = 35/75 (46%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           ++V  + +++D++ L   F  +G  + VK   D A+ K + FGFV +   E         
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDL 259

Query: 238 XXXELFGRVLTVNYA 282
               + G+VL V  A
Sbjct: 260 HGKSIDGKVLYVGRA 274

---

>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 34.3 bits (77), Expect = 0.21
 Identities = 20/75 (26%), Positives = 35/75 (46%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           ++V  + +++D++ L   F  +G  + VK   D A+ K + FGFV +   E         
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDL 259

Query: 238 XXXELFGRVLTVNYA 282
               + G+VL V  A
Sbjct: 260 HGKSIDGKVLYVGRA 274

---

>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 34.3 bits (77), Expect = 0.21
 Identities = 20/75 (26%), Positives = 35/75 (46%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           ++V  + +++D++ L   F  +G  + VK   D A+ K + FGFV +   E         
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDL 259

Query: 238 XXXELFGRVLTVNYA 282
               + G+VL V  A
Sbjct: 260 HGKSIDGKVLYVGRA 274

---

>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 34.3 bits (77), Expect = 0.21
 Identities = 20/75 (26%), Positives = 35/75 (46%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           ++V  + +++D++ L   F  +G  + VK   D A+ K + FGFV +   E         
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDL 259

Query: 238 XXXELFGRVLTVNYA 282
               + G+VL V  A
Sbjct: 260 HGKSIDGKVLYVGRA 274

---

>TADBP_MOUSE (Q921F2) TAR DNA-binding protein 43 (TDP-43)|
          Length = 414

 Score = 34.3 bits (77), Expect = 0.21
 Identities = 18/57 (31%), Positives = 31/57 (54%)
 Frame = +1

Query: 34  NQPVQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLE 204
           ++P++   ++VG   E++  + L   F  +GEV DV  P     +  R+F FVTF +
Sbjct: 185 DEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIP-----KPFRAFAFVTFAD 236



 Score = 33.9 bits (76), Expect = 0.28
 Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +1

Query: 31  MNQPVQKNT-LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLER 207
           + + VQK + L V GL  +  E+ L   F  FGEV  V+   D  T   + FGFV F E 
Sbjct: 96  VKRAVQKTSDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEY 155

Query: 208 E 210
           E
Sbjct: 156 E 156

---

>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein|
           1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B)
           (PABP 1-B) (xPABP1-B)
          Length = 633

 Score = 34.3 bits (77), Expect = 0.21
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLERE 210
           LYV  L + +D++ L   F PFG +   K  ++    K   FGFV F   E
Sbjct: 296 LYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEGGRSK--GFGFVCFSSPE 344

---

>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein|
           1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A)
           (PABP 1-A) (xPABP1-A)
          Length = 633

 Score = 34.3 bits (77), Expect = 0.21
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLERE 210
           LYV  L + +D++ L   F+PFG +   K  ++    K   FGFV F   E
Sbjct: 296 LYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGGRSK--GFGFVCFSSPE 344

---

>NCBP2_XENLA (P52299) Nuclear cap binding protein subunit 2 (20 kDa nuclear cap|
           binding protein) (NCBP 20 kDa subunit) (CBP20)
           (Fragment)
          Length = 148

 Score = 34.3 bits (77), Expect = 0.21
 Identities = 21/78 (26%), Positives = 33/78 (42%)
 Frame = +1

Query: 46  QKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXX 225
           Q  TLYVG L+    E+ +H  F   G+VK +   LD+  +    F FV +  R      
Sbjct: 30  QSCTLYVGNLSFYTTEEQIHELFSKSGDVKRIVMGLDKVKKTACGFCFVEYYTRADAGTA 89

Query: 226 XXXXXXXELFGRVLTVNY 279
                   L  R++  ++
Sbjct: 90  MRFINGTRLDDRIVRTDW 107

---

>IF2_RHIME (Q92SW4) Translation initiation factor IF-2|
          Length = 889

 Score = 34.3 bits (77), Expect = 0.21
 Identities = 20/51 (39%), Positives = 29/51 (56%)
 Frame = +1

Query: 361 RQQQEEEMKRLQTEQNAAMKEAERLHREKVAAEKNGETDEADPMAVAEAQA 513
           R+++EEE +  + ++ AA + AE   R  V AEK  E  EA   AV E +A
Sbjct: 143 RRRREEEERLAREKEEAARRAAEEAARPPVEAEKTEEKVEAASPAVGERRA 193

---

>NONA_DROME (Q04047) Protein no-on-transient A (Puff-specific protein Bj6)|
          Length = 700

 Score = 33.9 bits (76), Expect = 0.28
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +1

Query: 49  KNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQ 159
           +N LYVG L  ++ +  L   F P+GE+ ++ + LD+
Sbjct: 301 RNRLYVGNLTNDITDDELREMFKPYGEISEIFSNLDK 337

---

>YHH5_YEAST (P38760) Hypothetical 75.9 kDa protein in SPO13-ARG4 intergenic|
           region
          Length = 659

 Score = 33.5 bits (75), Expect = 0.36
 Identities = 16/74 (21%), Positives = 32/74 (43%)
 Frame = +1

Query: 52  NTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXX 231
           N+L++G L   V E++L   F  +   +  K   D  T+K   +G++ F ++        
Sbjct: 111 NSLFIGNLKSTVTEEMLRKIFKRYQSFESAKVCRDFLTKKSLGYGYLNFKDKNDAESARK 170

Query: 232 XXXXXELFGRVLTV 273
                  FG+ + +
Sbjct: 171 EFNYTVFFGQEVKI 184

---

>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1|
          Length = 858

 Score = 33.5 bits (75), Expect = 0.36
 Identities = 20/79 (25%), Positives = 33/79 (41%)
 Frame = +1

Query: 31  MNQPVQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLERE 210
           ++Q ++   L++  L        + A F  FG VK V  PLD+ T+  +   FV+F +  
Sbjct: 307 VDQIMESGRLFIRNLPFAASGDEILAFFESFGTVKQVHIPLDKQTKASKGLAFVSFSDPA 366

Query: 211 XXXXXXXXXXXXELFGRVL 267
                          GR+L
Sbjct: 367 HALAAYRAKDGSTFQGRLL 385

---

>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like|
           (Nucleolar phosphoprotein NOPP34-like protein)
          Length = 269

 Score = 33.5 bits (75), Expect = 0.36
 Identities = 33/145 (22%), Positives = 62/145 (42%), Gaps = 4/145 (2%)
 Frame = +1

Query: 37  QPVQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXX 216
           Q +    LYVG L   + E  L + F  FG+V  ++    + T   + +GFV F   E  
Sbjct: 40  QTLSPGVLYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFECDEVA 99

Query: 217 XXXXXXXXXXELFGRVLTVNYAFPEKIKG----GEQGWAAQPVWADADTWFERQQQEEEM 384
                      +  R++  +   PEK+      G      +P +  A T + +   E+++
Sbjct: 100 KIVAETMNNYLMGERIIKCHVIPPEKVHEKLFVGSIAGFKKPKY-PAVTRYNKTHTEDDV 158

Query: 385 KRLQTEQNAAMKEAERLHREKVAAE 459
           K++ T+    +   E   R+++AA+
Sbjct: 159 KKVGTK----LLSKESKLRKRLAAK 179

---

>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 375

 Score = 33.1 bits (74), Expect = 0.47
 Identities = 21/75 (28%), Positives = 33/75 (44%)
 Frame = +1

Query: 49  KNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXX 228
           K +++VG L  ++++  L   F+  G +  V+   +  T   R FG+V F E        
Sbjct: 290 KRSVFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLF-ENTDAVHLA 348

Query: 229 XXXXXXELFGRVLTV 273
                 EL GR L V
Sbjct: 349 LKLNNSELMGRKLRV 363

---

>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 33.1 bits (74), Expect = 0.47
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLERE 210
           LYV  L + +D++ L   F PFG +   K  ++    K   FGFV F   E
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPE 344

---

>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 33.1 bits (74), Expect = 0.47
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLERE 210
           LYV  L + +D++ L   F PFG +   K  ++    K   FGFV F   E
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPE 344

---

>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 33.1 bits (74), Expect = 0.47
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLERE 210
           LYV  L + +D++ L   F PFG +   K  ++    K   FGFV F   E
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPE 344

---

>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 33.1 bits (74), Expect = 0.47
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLERE 210
           LYV  L + +D++ L   F PFG +   K  ++    K   FGFV F   E
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSK--GFGFVCFSSPE 344

---

>NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA-binding|
           protein RBP1)
          Length = 672

 Score = 33.1 bits (74), Expect = 0.47
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = +1

Query: 34  NQPVQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLER 207
           N      T++VGGL  +  E  L + F PFG + +V+ P        ++ GFV F +R
Sbjct: 354 NTDPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIP------NGKNCGFVKFEKR 405

---

>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Glycine-and tyrosine-rich
           RNA-binding protein) (GRY-RBP) (NS1-associated protein
           1) (pp68)
          Length = 623

 Score = 32.7 bits (73), Expect = 0.61
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +1

Query: 37  QPVQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLERE 210
           QP     ++VG +  ++ E  L   F   G + D++  +D  T  +R + FVTF  +E
Sbjct: 157 QPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKE 214

---

>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Glycine-and tyrosine-rich
           RNA-binding protein) (GRY-RBP) (NS1-associated protein
           1)
          Length = 623

 Score = 32.7 bits (73), Expect = 0.61
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +1

Query: 37  QPVQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLERE 210
           QP     ++VG +  ++ E  L   F   G + D++  +D  T  +R + FVTF  +E
Sbjct: 157 QPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKE 214

---

>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Liver regeneration-related
           protein LRRG077)
          Length = 533

 Score = 32.7 bits (73), Expect = 0.61
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +1

Query: 37  QPVQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLERE 210
           QP     ++VG +  ++ E  L   F   G + D++  +D  T  +R + FVTF  +E
Sbjct: 67  QPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKE 124

---

>TNNI_CHLNI (Q7M3Y3) Troponin I (TnI)|
          Length = 292

 Score = 32.7 bits (73), Expect = 0.61
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +1

Query: 361 RQQQEEEMKRLQTEQNAAMKEAERLHREKVAAEKNGE 471
           RQ+QEEE +R + EQ    +E ERL  E+   E+  E
Sbjct: 89  RQRQEEERQRREEEQRRQQEEEERLRLEREEQEREEE 125



 Score = 32.0 bits (71), Expect = 1.0
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +1

Query: 361 RQQQEEEMKRLQTEQNAAMKEAERLHREKVAAEKNG 468
           RQQ+EEE  RL+ E+    +EA R+  E+   +K G
Sbjct: 105 RQQEEEERLRLEREEQEREEEARRMAEEQKKKKKKG 140



 Score = 28.9 bits (63), Expect = 8.9
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 358 ERQQQEEEMKRLQTEQNAAMKEAERLHREKVA 453
           ERQ++EEE +R Q E+     E E   RE+ A
Sbjct: 95  ERQRREEEQRRQQEEEERLRLEREEQEREEEA 126

---

>IF4G_SCHPO (Q10475) Eukaryotic translation initiation factor 4 gamma|
           (eIF-4-gamma) (eIF-4G)
          Length = 1403

 Score = 32.7 bits (73), Expect = 0.61
 Identities = 20/49 (40%), Positives = 31/49 (63%)
 Frame = +1

Query: 361 RQQQEEEMKRLQTEQNAAMKEAERLHREKVAAEKNGETDEADPMAVAEA 507
           +++ EE++KR +TE+NA  K  E   RE   A+KN E   + P+A +EA
Sbjct: 682 KREAEEKVKR-ETEENAKRKAEEEGKRE---ADKNPEIKSSAPLASSEA 726

---

>NONA_DROLR (Q9GRX4) Protein no-on-transient A|
          Length = 698

 Score = 32.3 bits (72), Expect = 0.80
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = +1

Query: 49  KNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQ 159
           +N LYVG L  ++ ++ L   F P+GE+ ++ + L++
Sbjct: 280 RNRLYVGNLTNDITDEELREMFKPYGEIGEIFSNLEK 316

---

>PDE9A_HUMAN (O76083) High-affinity cGMP-specific 3',5'-cyclic phosphodiesterase|
           9A (EC 3.1.4.35)
          Length = 593

 Score = 32.3 bits (72), Expect = 0.80
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +1

Query: 325 QPVWADADTWFERQQQEEEMKRLQTEQNAAMKEAERLHREKVAAEKNGETD 477
           QP+W   D + E ++ ++ MK LQ + ++    A    RE+    KN E D
Sbjct: 541 QPLWESRDRYEELKRIDDAMKELQKKTDSLTSGATEKSRERSRDVKNSEGD 591

---

>NONA_DROVI (Q9GRW7) Protein no-on-transient A|
          Length = 697

 Score = 32.3 bits (72), Expect = 0.80
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = +1

Query: 49  KNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQ 159
           +N LYVG L  ++ ++ L   F P+GE+ ++ + L++
Sbjct: 284 RNRLYVGNLTNDITDEELREMFKPYGEIGEIFSNLEK 320

---

>GLE1_DROME (Q9V4W1) Nucleoporin GLE1|
          Length = 677

 Score = 32.3 bits (72), Expect = 0.80
 Identities = 19/53 (35%), Positives = 32/53 (60%)
 Frame = +1

Query: 361 RQQQEEEMKRLQTEQNAAMKEAERLHREKVAAEKNGETDEADPMAVAEAQAVN 519
           +QQQEEE ++L+ +Q   ++E E+L +EK  +    +  EA+    A+A A N
Sbjct: 298 QQQQEEERQKLEEQQK--LEEQEKLRKEKEESAAKEKQQEAE---TAKADAAN 345

---

>MK67I_HUMAN (Q9BYG3) MKI67 FHA domain-interacting nucleolar phosphoprotein|
           (Nucleolar protein interacting with the FHA domain of
           pKI-67) (hNIFK) (Nucleolar phosphoprotein Nopp34)
          Length = 293

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 5/137 (3%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           +YV  L   +DE  + + F  FG V   +    + T   + + FV F E E         
Sbjct: 47  VYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEF-ESEDVAKIVAET 105

Query: 238 XXXELFG-RVLTVNYAFPEKI-KGGEQGW---AAQPVWADADTWFERQQQEEEMKRLQTE 402
               LFG R+L  ++  PEK+ K   + W     QP +     +   +   ++++     
Sbjct: 106 MNNYLFGERLLECHFMPPEKVHKELFKDWNIPFKQPSYPSVKRYNRNRTLTQKLR----- 160

Query: 403 QNAAMKEAERLHREKVA 453
                K+ ERL R+K+A
Sbjct: 161 MEERFKKKERLLRKKLA 177

---

>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 668

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 22/75 (29%), Positives = 31/75 (41%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           +YV  L +E+ +  L   F  +G++       DQ+    RSFGFV F+  E         
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNS-RSFGFVNFVSPEAAAVAVEKM 285

Query: 238 XXXELFGRVLTVNYA 282
               L   VL V  A
Sbjct: 286 NGISLGEDVLYVGRA 300

---

>TOLA_PSEAE (P50600) Protein tolA|
          Length = 347

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 19/62 (30%), Positives = 34/62 (54%)
 Frame = +1

Query: 325 QPVWADADTWFERQQQEEEMKRLQTEQNAAMKEAERLHREKVAAEKNGETDEADPMAVAE 504
           Q +  +A     +Q + E++++ + EQ     E ++L +++VAA K  E  +AD    AE
Sbjct: 67  QKIAGEAKKTASKQYEVEQLEQKKLEQQKL--EQQKLEQQQVAAAKAAEQKKADEARKAE 124

Query: 505 AQ 510
           AQ
Sbjct: 125 AQ 126

---

>LNT_BORBU (O51253) Apolipoprotein N-acyltransferase (EC 2.3.1.-) (ALP|
           N-acyltransferase)
          Length = 521

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = -2

Query: 182 KERCFCVAWSSGVLTSLTSPN 120
           K RCFC+A  SG+LT+L  PN
Sbjct: 2   KTRCFCLAAFSGILTTLAIPN 22

---

>SAFB2_HUMAN (Q14151) Scaffold attachment factor B2|
          Length = 953

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 30/143 (20%), Positives = 55/143 (38%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           L+V GL+       L   F  +G+V   K   +  +   R +GFVT    +         
Sbjct: 409 LWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKCISHL 468

Query: 238 XXXELFGRVLTVNYAFPEKIKGGEQGWAAQPVWADADTWFERQQQEEEMKRLQTEQNAAM 417
              EL GR+++V     EK K        +P         E + ++E++  +    +  +
Sbjct: 469 HRTELHGRMISV-----EKAKN-------EPAGKKLSDRKECEVKKEKLSSVDRHHSVEI 516

Query: 418 KEAERLHREKVAAEKNGETDEAD 486
           K  + + +++   EK  E    D
Sbjct: 517 KIEKTVIKKEEKIEKKEEKKPED 539

---

>POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein; Protease (EC|
            3.4.23.-); Reverse transcriptase (EC 2.7.7.49);
            Ribonuclease H (EC 3.1.26.4)]
          Length = 1886

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 21/71 (29%), Positives = 38/71 (53%)
 Frame = +1

Query: 259  RVLTVNYAFPEKIKGGEQGWAAQPVWADADTWFERQQQEEEMKRLQTEQNAAMKEAERLH 438
            ++L+ +Y+F  +   G++G A      + +  F   Q ++E +RLQ +     +E  +LH
Sbjct: 1053 KILSKDYSFSAR---GKKGKAVIIEEDEIEGEFLISQLQQENQRLQKQVERLQEELMKLH 1109

Query: 439  REKVAAEKNGE 471
            REK  A K+ E
Sbjct: 1110 REKDEALKHSE 1120

---

>SAFB2_MOUSE (Q80YR5) Scaffold attachment factor B2|
          Length = 991

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 34/156 (21%), Positives = 58/156 (37%), Gaps = 5/156 (3%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           L+V GL+       L + F   G+V   K   +  +   R +GFVT    +         
Sbjct: 453 LWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSDEATKCISHL 512

Query: 238 XXXELFGRVLTVNYA--FPEKIKGGEQGWAAQPVWADADTWFERQQQEEEMKRLQTEQNA 411
              EL GR+++V  A   P + K  ++    Q                    +++TE+  
Sbjct: 513 HRTELHGRMISVEKAKNEPSEKKSSDRRACDQKEKVPG-------PDRPHPVKIKTEKTV 565

Query: 412 AMKEAERLHREKVAAE---KNGETDEADPMAVAEAQ 510
             KE +   +E+   E   K  + DE  P A   ++
Sbjct: 566 IKKEEKLERKEEKGPEDIKKEKDQDELTPGAAGHSR 601

---

>IF2P_HUMAN (O60841) Eukaryotic translation initiation factor 5B (eIF-5B)|
           (Translation initiation factor IF-2)
          Length = 1220

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
 Frame = +1

Query: 289 EKIKGGEQGW--AAQPVWADADTWFERQQQEEE--MKRLQTEQNAAMKEAERLHREKVAA 456
           EK KG  +    A Q   A      ERQ++EEE  +KRL+ E  A  KE ERL +EK   
Sbjct: 331 EKKKGPSKATVKAMQEALAKLKEEEERQKREEEERIKRLE-ELEAKRKEEERLEQEKRER 389

Query: 457 EKNGETDEAD 486
           +K  E +  +
Sbjct: 390 KKQKEKERKE 399

---

>HRP65_CHITE (Q9U1N0) Hrp65 protein (Ct-Hrp65)|
          Length = 535

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 49  KNTLYVGGLAEEVDEKILHAAFVPFGEVKD 138
           +N LY+G L  +V E+ L   F P+GE+ +
Sbjct: 112 RNRLYIGNLTSDVTEEELKELFSPYGEISE 141

---

>IE68_SHV21 (Q01042) Immediate-early protein|
          Length = 407

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
 Frame = +1

Query: 298 KGGEQGWAAQPVWADADTWFERQQQEEEMKRLQTEQNAAMKEAERLH-REKVAAEKNGET 474
           +GGE+G   +   A+ +   E++ +EEE +  + E+ A  +EAE     E+ A E+  E 
Sbjct: 85  EGGEEGEGREE--AEEEEAEEKEAEEEEAE--EAEEEAEEEEAEEAEAEEEEAEEEEAEE 140

Query: 475 DEADPMAVAEAQ 510
           +EA+     EA+
Sbjct: 141 EEAEEAEEEEAE 152



 Score = 30.8 bits (68), Expect = 2.3
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = +1

Query: 322 AQPVWADADTWFERQQQEEEMKRLQTEQ-NAAMKEAERLHREKVAAEKNGETDEADPMAV 498
           A+   A+ +   E + +EEE +  + E+   A +EAE    E+ A E+  E +EA+  A 
Sbjct: 123 AEEAEAEEEEAEEEEAEEEEAEEAEEEEAEEAEEEAEEEEAEEEAEEEAEEAEEAEEEAE 182

Query: 499 AEAQ 510
            EA+
Sbjct: 183 EEAE 186



 Score = 28.9 bits (63), Expect = 8.9
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +1

Query: 340 DADTWFERQQQEEEMKRLQTEQNAAMKEAERLHREKVAAEKNGETDEAD 486
           +A+   E ++ EEE +  + E   A +EAE     + A E   E +EA+
Sbjct: 187 EAEEAEEAEEAEEEAEEAEEEAEEAEEEAEEAEEAEEAEEAEEEAEEAE 235

---

>DAZ1_CAEEL (Q20870) DAZ protein 1|
          Length = 499

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +1

Query: 52  NTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           N ++VGG      E  L   F  F  VKDVK  +     + + +GF+TF
Sbjct: 67  NRIFVGGFPTSTTETELREHFEKFFAVKDVKM-VKSLDGQSKGYGFITF 114

---

>RADI_MOUSE (P26043) Radixin (ESP10)|
          Length = 583

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +1

Query: 358 ERQQQEEEMKRLQTEQNAAMKEAERLHREKVAAEK 462
           E ++Q  +   L+ E+  A +EAERL RE+ AAE+
Sbjct: 364 ELEEQTRKALELEQERQRAKEEAERLDRERRAAEE 398

---

>IF2_BURS3 (Q39H30) Translation initiation factor IF-2|
          Length = 972

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
 Frame = +1

Query: 298 KGGEQGWAAQPVWADADTWFERQQQEEEMKR----LQTEQNAAMKEAERLHREKVAAEKN 465
           +G EQG A     A+AD   E +++EEE +R    L+ +     +  ERL RE+      
Sbjct: 104 EGAEQGQAQV---AEADDDAELKRREEEARREADLLEKQAQELRERQERLEREEAERRAR 160

Query: 466 GETDEADPMAVAEAQA 513
            E  EA+     E  A
Sbjct: 161 EEAAEAERRRAEEEAA 176

---

>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein|
           3) (PABP 3)
          Length = 660

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +1

Query: 34  NQPVQKNT-LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           N P  + T +YV  L +E+ E  L   F  FG +       DQ+    R FGFV F
Sbjct: 222 NTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNS-RCFGFVNF 276

---

>DEC11_DROME (P18169) Defective chorion-1 protein, FC125 isoform precursor|
          Length = 1208

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 17/73 (23%), Positives = 35/73 (47%)
 Frame = +1

Query: 292 KIKGGEQGWAAQPVWADADTWFERQQQEEEMKRLQTEQNAAMKEAERLHREKVAAEKNGE 471
           KI+  +Q     P+      W E Q + ++ ++ Q +QN  M +  +   E+   ++N +
Sbjct: 535 KIQQNQQQIQQNPMMMQQRQWSEEQAKIQQNQQ-QIQQNPMMMQQRQWSEEQAKIQQNQQ 593

Query: 472 TDEADPMAVAEAQ 510
             + +PM V + Q
Sbjct: 594 QIQQNPMMVQQRQ 606



 Score = 29.3 bits (64), Expect = 6.8
 Identities = 16/73 (21%), Positives = 35/73 (47%)
 Frame = +1

Query: 292 KIKGGEQGWAAQPVWADADTWFERQQQEEEMKRLQTEQNAAMKEAERLHREKVAAEKNGE 471
           KI+  +Q     P+      W E Q + ++ ++ Q +QN  M +  +   E+   ++N +
Sbjct: 509 KIQQNQQQIQQNPMMMQQRQWSEEQAKIQQNQQ-QIQQNPMMMQQRQWSEEQAKIQQNQQ 567

Query: 472 TDEADPMAVAEAQ 510
             + +PM + + Q
Sbjct: 568 QIQQNPMMMQQRQ 580



 Score = 28.9 bits (63), Expect = 8.9
 Identities = 16/73 (21%), Positives = 35/73 (47%)
 Frame = +1

Query: 292 KIKGGEQGWAAQPVWADADTWFERQQQEEEMKRLQTEQNAAMKEAERLHREKVAAEKNGE 471
           KI+  +Q     P+      W E Q + ++ ++ Q +QN  M +  +   E+   ++N +
Sbjct: 561 KIQQNQQQIQQNPMMMQQRQWSEEQAKIQQNQQ-QIQQNPMMVQQRQWSEEQAKIQQNQQ 619

Query: 472 TDEADPMAVAEAQ 510
             + +PM + + Q
Sbjct: 620 QIQQNPMMMQQRQ 632

---

>DEC13_DROME (P18171) Defective chorion-1 protein, FC177 isoform precursor|
          Length = 1590

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 17/73 (23%), Positives = 35/73 (47%)
 Frame = +1

Query: 292 KIKGGEQGWAAQPVWADADTWFERQQQEEEMKRLQTEQNAAMKEAERLHREKVAAEKNGE 471
           KI+  +Q     P+      W E Q + ++ ++ Q +QN  M +  +   E+   ++N +
Sbjct: 535 KIQQNQQQIQQNPMMMQQRQWSEEQAKIQQNQQ-QIQQNPMMMQQRQWSEEQAKIQQNQQ 593

Query: 472 TDEADPMAVAEAQ 510
             + +PM V + Q
Sbjct: 594 QIQQNPMMVQQRQ 606



 Score = 29.3 bits (64), Expect = 6.8
 Identities = 16/73 (21%), Positives = 35/73 (47%)
 Frame = +1

Query: 292 KIKGGEQGWAAQPVWADADTWFERQQQEEEMKRLQTEQNAAMKEAERLHREKVAAEKNGE 471
           KI+  +Q     P+      W E Q + ++ ++ Q +QN  M +  +   E+   ++N +
Sbjct: 509 KIQQNQQQIQQNPMMMQQRQWSEEQAKIQQNQQ-QIQQNPMMMQQRQWSEEQAKIQQNQQ 567

Query: 472 TDEADPMAVAEAQ 510
             + +PM + + Q
Sbjct: 568 QIQQNPMMMQQRQ 580



 Score = 28.9 bits (63), Expect = 8.9
 Identities = 16/73 (21%), Positives = 35/73 (47%)
 Frame = +1

Query: 292 KIKGGEQGWAAQPVWADADTWFERQQQEEEMKRLQTEQNAAMKEAERLHREKVAAEKNGE 471
           KI+  +Q     P+      W E Q + ++ ++ Q +QN  M +  +   E+   ++N +
Sbjct: 561 KIQQNQQQIQQNPMMMQQRQWSEEQAKIQQNQQ-QIQQNPMMVQQRQWSEEQAKIQQNQQ 619

Query: 472 TDEADPMAVAEAQ 510
             + +PM + + Q
Sbjct: 620 QIQQNPMMMQQRQ 632

---

>IF2_IDILO (Q5QTY8) Translation initiation factor IF-2|
          Length = 896

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = +1

Query: 307 EQGWAAQPVWADADTWFERQQQEEEMKRLQTEQNAAMKEAERLHRE 444
           E+  AA    ADA+   +RQQ+EE  K+ + E  A  +EA +L  E
Sbjct: 182 EEREAADKAKADAEK-LKRQQEEEARKKAEKEAEAQAEEARKLAEE 226

---

>IF3A_TOBAC (Q40554) Eukaryotic translation initiation factor 3 subunit 10|
           (eIF-3 theta) (Eukaryotic translation initiation factor
           3 large subunit) (eIF3a) (PNLA-35)
          Length = 958

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +1

Query: 355 FERQQQEEEMKRLQTEQNAAMKEAERLHREKVAAEKNGETDE 480
           F  + +EE  KRLQ E+ A  +E E   R+K  AE+  + DE
Sbjct: 794 FFLRSEEERQKRLQEEEEARKRE-EAERRKKEEAERQAKLDE 834

---

>DEC12_DROME (P18170) Defective chorion-1 protein, FC106 isoform precursor|
           [Contains: Defective chorion-1 protein, FC106 isoform;
           FC106 S80; FC106 S60]
          Length = 950

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 17/73 (23%), Positives = 35/73 (47%)
 Frame = +1

Query: 292 KIKGGEQGWAAQPVWADADTWFERQQQEEEMKRLQTEQNAAMKEAERLHREKVAAEKNGE 471
           KI+  +Q     P+      W E Q + ++ ++ Q +QN  M +  +   E+   ++N +
Sbjct: 535 KIQQNQQQIQQNPMMMQQRQWSEEQAKIQQNQQ-QIQQNPMMMQQRQWSEEQAKIQQNQQ 593

Query: 472 TDEADPMAVAEAQ 510
             + +PM V + Q
Sbjct: 594 QIQQNPMMVQQRQ 606



 Score = 29.3 bits (64), Expect = 6.8
 Identities = 16/73 (21%), Positives = 35/73 (47%)
 Frame = +1

Query: 292 KIKGGEQGWAAQPVWADADTWFERQQQEEEMKRLQTEQNAAMKEAERLHREKVAAEKNGE 471
           KI+  +Q     P+      W E Q + ++ ++ Q +QN  M +  +   E+   ++N +
Sbjct: 509 KIQQNQQQIQQNPMMMQQRQWSEEQAKIQQNQQ-QIQQNPMMMQQRQWSEEQAKIQQNQQ 567

Query: 472 TDEADPMAVAEAQ 510
             + +PM + + Q
Sbjct: 568 QIQQNPMMMQQRQ 580



 Score = 28.9 bits (63), Expect = 8.9
 Identities = 16/73 (21%), Positives = 35/73 (47%)
 Frame = +1

Query: 292 KIKGGEQGWAAQPVWADADTWFERQQQEEEMKRLQTEQNAAMKEAERLHREKVAAEKNGE 471
           KI+  +Q     P+      W E Q + ++ ++ Q +QN  M +  +   E+   ++N +
Sbjct: 561 KIQQNQQQIQQNPMMMQQRQWSEEQAKIQQNQQ-QIQQNPMMVQQRQWSEEQAKIQQNQQ 619

Query: 472 TDEADPMAVAEAQ 510
             + +PM + + Q
Sbjct: 620 QIQQNPMMMQQRQ 632

---

>RU2B_SCHPO (Q7LL14) Probable U2 small nuclear ribonucleoprotein B"|
          Length = 111

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
 Frame = +1

Query: 43  VQKNTLYVGGLAEEVDEKILHAA----FVPFGEVKDVKTPLDQATQKHRSFGFVTFLERE 210
           + +NTLYV  L +++++  L  A    F  +G V D+   +   T K R    V F +  
Sbjct: 1   MNQNTLYVNNLNDKINKNDLRTALYMLFSTYGTVVDI---VALKTPKMRGQAHVVFFDPS 57

Query: 211 XXXXXXXXXXXXELFGRVLTVNYA 282
                         FG+ + + YA
Sbjct: 58  AAAIAMKALKNFIFFGKEMKIQYA 81

---

>TCF8_HUMAN (P37275) Transcription factor 8 (NIL-2-A zinc finger protein)|
            (Negative regulator of IL2)
          Length = 1124

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 21/79 (26%), Positives = 33/79 (41%)
 Frame = +1

Query: 280  AFPEKIKGGEQGWAAQPVWADADTWFERQQQEEEMKRLQTEQNAAMKEAERLHREKVAAE 459
            A PE +     G  A P   D+D      ++E+E    + E+    KE E L  EK   +
Sbjct: 1001 AGPEILSNEHVGARASPSQGDSDERESLTREEDEDSEKEEEEED--KEMEELQEEKECEK 1058

Query: 460  KNGETDEADPMAVAEAQAV 516
              G+ +E +     E + V
Sbjct: 1059 PQGDEEEEEEEEEVEEEEV 1077

---

>SWC3_ASHGO (Q758T8) SWR1-complex protein 3|
          Length = 688

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +1

Query: 358 ERQQQEEEMKRLQT-EQNAAMKEAERLHREKVAAEKNGETD 477
           E++++ EE KRLQ  ++   +KE E   +EK+  ++  +T+
Sbjct: 188 EKERRREERKRLQQLKKERKLKEVEHTKKEKIERKRENDTE 228

---

>NOP12_YARLI (Q6C2Q7) Nucleolar protein 12|
          Length = 509

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +1

Query: 49  KNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           K  ++VG L  E  E+ L  AF   G+V+ V+   D  T   + F +V F
Sbjct: 273 KRCVFVGALDFEEQEESLWEAFSSCGDVEYVRIVRDPKTNVGKGFAYVQF 322

---

>IF3A_SCHPO (O74760) Probable eukaryotic translation initiation factor 3 110|
           kDa subunit (eIF3 p110) (Translation initiation factor
           eIF3, p110 subunit) (eIF3a)
          Length = 932

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 361 RQQQEEEMKRLQTEQNAAMKEAERLHREKVAAEKNGETDEADPMAVAEAQAVN 519
           +Q+QE E + L+ ++    + AER+ REK A   N     A+ +       VN
Sbjct: 592 KQKQESEAESLRVQEEINKRNAERIRREKEAIRINEAKKLAEELKAKGGLEVN 644

---

>CCD96_MACFA (Q95LS7) Coiled-coil domain-containing protein 96|
          Length = 560

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = +1

Query: 280 AFPEKIKGGEQGWAAQPVWADADTWFERQQQEEEMKRLQTEQNA-AMKEAERLHREKVAA 456
           A P KIK    G    P   + ++  E +++EEE +  +  Q   A  E  ++ +E  AA
Sbjct: 23  ARPSKIKASS-GPPTPPEPGELESEPEEEEEEEEEEEEEASQGGTAADEQAKVPKELTAA 81

Query: 457 EKNGETDEADPMAVAEAQ 510
           E  GE    +P   A+ Q
Sbjct: 82  EAAGEEGPGEPGRPAKPQ 99

---

>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich|
           (Polypyrimidine tract-binding protein-associated
           splicing factor) (PTB-associated splicing factor) (PSF)
           (DNA-binding p52/p100 complex, 100 kDa subunit)
          Length = 699

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 20/79 (25%), Positives = 30/79 (37%)
 Frame = +1

Query: 46  QKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXX 225
           Q+  L+VG L  ++ E      F  +GE      P +    K + FGF+    R      
Sbjct: 287 QRCRLFVGNLPADITEDEFKRLFAKYGE------PGEVFINKGKGFGFIKLESRALAEIA 340

Query: 226 XXXXXXXELFGRVLTVNYA 282
                   + GR L V +A
Sbjct: 341 KAELDDTPMRGRQLRVRFA 359

---

>UPPS_METKA (Q8TXA7) Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) (UPP|
           synthetase) (Di-trans,poly-cis-decaprenylcistransferase)
           (Undecaprenyl diphosphate synthase) (UDS)
          Length = 271

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = +1

Query: 373 EEEMKRL---QTEQNAAMKEAERLHREKVAAEKNG 468
           +EE+KRL     E+  A+ E+ER+HR KVA    G
Sbjct: 103 KEELKRLFDLMEERFKALAESERIHRRKVAVRAVG 137

---

>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)|
          Length = 758

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 55  TLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           TL+VG L      + L   F   G VK      ++ ++  R FG+VTF
Sbjct: 4   TLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTF 51

---

>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich|
           (Polypyrimidine tract-binding protein-associated
           splicing factor) (PTB-associated splicing factor) (PSF)
           (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa
           DNA-pairing protein) (hPOMp
          Length = 707

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 20/79 (25%), Positives = 30/79 (37%)
 Frame = +1

Query: 46  QKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXX 225
           Q+  L+VG L  ++ E      F  +GE      P +    K + FGF+    R      
Sbjct: 295 QRCRLFVGNLPADITEDEFKRLFAKYGE------PGEVFINKGKGFGFIKLESRALAEIA 348

Query: 226 XXXXXXXELFGRVLTVNYA 282
                   + GR L V +A
Sbjct: 349 KAELDDTPMRGRQLRVRFA 367

---

>MNN4_YEAST (P36044) Protein MNN4|
          Length = 1178

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 13/41 (31%), Positives = 26/41 (63%)
 Frame = +1

Query: 358  ERQQQEEEMKRLQTEQNAAMKEAERLHREKVAAEKNGETDE 480
            E+++ EEE K+ Q E+N   ++ E+  +E+   +KN E ++
Sbjct: 1129 EKKKNEEEEKKKQEEKNKKNEDEEKKKQEEEEKKKNEEEEK 1169



 Score = 28.9 bits (63), Expect = 8.9
 Identities = 11/41 (26%), Positives = 25/41 (60%)
 Frame = +1

Query: 358  ERQQQEEEMKRLQTEQNAAMKEAERLHREKVAAEKNGETDE 480
            +++Q+EEE K+ + E+    +E E++  E    +KN + ++
Sbjct: 1090 KKKQEEEEKKKKEEEEKKKQEEGEKMKNEDEENKKNEDEEK 1130

---

>G3BP_MOUSE (P97855) Ras-GTPase-activating protein-binding protein 1 (EC|
           3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP
           SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII)
          Length = 465

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLERE 210
           L++G L  EVD+  L   F  FG V +++     +  K  +FGFV F + E
Sbjct: 340 LFIGNLPHEVDKSELKDFFQNFGNVVELRI---NSGGKLPNFGFVVFDDSE 387

---

>CP306_DROME (Q9VWR5) Cytochrome P450 306a1 (EC 1.14.-.-) (CYPCCCVIA1) (Phantom|
           protein) (Dmphm)
          Length = 574

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 358 ERQQQEEEMKRLQTEQNAAMKEAERLHREKVAAEKNGETDEAD 486
           E Q+Q+   ++L+ EQ    KEA+    +  A E + E+DE D
Sbjct: 291 ELQEQKRLQRQLEKEQLRQSKEADPSQEQSEADEDDEESDEED 333

---

>NOP12_CANGA (Q6FUS6) Nucleolar protein 12|
          Length = 396

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +1

Query: 46  QKNTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLE 204
           ++ +++VG L  E DE+ L   F   G ++ V+   D  T   + F +V F E
Sbjct: 226 KQRSVFVGNLDFEEDEESLWKHFGACGSIEYVRIVRDPKTNMGKGFAYVQFNE 278

---

>IF2_VIBCH (Q9KU80) Translation initiation factor IF-2|
          Length = 898

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +1

Query: 364 QQQEEEMKRLQTEQNAAMKEAE---RLHREKVAAEKNGETDEADPMAVAEAQ 510
           +++ E +KR Q E+     E E   +L + +  AEKNGE   AD   V + Q
Sbjct: 183 RKEAEALKRRQEEEARRKAEEESRRQLEKVRELAEKNGERWSADKETVGDMQ 234

---

>CALD1_CHICK (P12957) Caldesmon (CDM)|
          Length = 771

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 20/74 (27%), Positives = 35/74 (47%)
 Frame = +1

Query: 289 EKIKGGEQGWAAQPVWADADTWFERQQQEEEMKRLQTEQNAAMKEAERLHREKVAAEKNG 468
           E++K  E+  AA+          E+Q+ EEE K  +  + A  +E +R   E+  A+   
Sbjct: 261 ERLKAEEEKKAAE----------EKQKAEEEKKAAEERERAKAEEEKRAAEERERAKAEE 310

Query: 469 ETDEADPMAVAEAQ 510
           E   A+    A+A+
Sbjct: 311 ERKAAEERERAKAE 324

---

>GCP60_MOUSE (Q8BMP6) Golgi resident protein GCP60 (Acyl-CoA-binding|
           domain-containing protein 3) (Golgi phosphoprotein 1)
           (GOLPH1) (Golgi complex-associated protein 1) (GOCAP1)
           (PBR- and PKA-associated protein 7) (Peripherial
           benzodiazepine receptor-asso
          Length = 524

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +1

Query: 361 RQQQEEEMKRLQTEQNAAMKEAE-RLHREK 447
           RQ++EEE +RLQ E+    +E E RL RE+
Sbjct: 193 RQREEEERERLQKEEEKRKREKEDRLRREE 222

---

>RNP4F_DROME (Q9W4D2) RNA-binding protein 4F|
          Length = 941

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +1

Query: 52  NTLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           N ++V  L     ++ LH  F PFG +KDV+  + +  ++ +   +V F
Sbjct: 724 NKIFVRNLHPACSKEELHELFSPFGTIKDVRL-VHKLNKQFKGIAYVEF 771

---

>RADI_PIG (P26044) Radixin (Moesin-B)|
          Length = 583

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +1

Query: 358 ERQQQEEEMKRLQTEQNAAMKEAERLHREKVAAEK 462
           E ++Q  +   L  E+  A +EAERL +E+ AAE+
Sbjct: 364 ELEEQTRKALELDQERKRAKEEAERLEKERRAAEE 398

---

>RADI_HUMAN (P35241) Radixin|
          Length = 583

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +1

Query: 358 ERQQQEEEMKRLQTEQNAAMKEAERLHREKVAAEK 462
           E ++Q  +   L  E+  A +EAERL +E+ AAE+
Sbjct: 364 ELEEQTRKALELDQERKRAKEEAERLEKERRAAEE 398

---

>PO5FM_HUMAN (Q9BZV7) POU domain, class 5, transcription factor 1-like protein 2|
          Length = 359

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 265 LTVNYAF-PEKIKGGEQGWAAQPVWADADTWFERQ 366
           L  ++AF P    GG+  W A+P W D  TW   Q
Sbjct: 5   LASDFAFSPPPGGGGDGPWGAEPGWVDPLTWLSFQ 39

---

>PO5FL_HUMAN (Q06416) POU domain, class 5, transcription factor 1-like protein 1|
           (Octamer-binding protein 3-like)
          Length = 359

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 265 LTVNYAF-PEKIKGGEQGWAAQPVWADADTWFERQ 366
           L  ++AF P    GG+  W A+P W D  TW   Q
Sbjct: 5   LASDFAFSPPPGGGGDGPWGAEPGWVDPLTWLSFQ 39

---

>GCP60_RAT (Q7TNY6) Golgi resident protein GCP60 (Acyl-CoA-binding|
           domain-containing protein 3) (Golgi phosphoprotein 1)
           (GOLPH1) (Golgi complex-associated protein 1) (GOCAP1)
           (DMT1-associated protein) (DAP)
          Length = 525

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +1

Query: 361 RQQQEEEMKRLQTEQNAAMKEAE-RLHREK 447
           RQ++EEE +RLQ E+    +E E RL RE+
Sbjct: 193 RQREEEERERLQKEEEKRKREEEDRLRREE 222

---

>RNP24_SCHPO (Q09100) RNA-binding protein rnp24|
          Length = 369

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           L+VG L  E  +  L   F   G+++ V+    + T K + FGFV F
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276

---

>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)|
          Length = 749

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +1

Query: 55  TLYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTF 198
           TL+VG L        L   F   G VK      ++ ++  R FG+VTF
Sbjct: 4   TLFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTF 51

---

>SYDC_YEAST (P04802) Aspartyl-tRNA synthetase, cytoplasmic (EC 6.1.1.12)|
           (Aspartate--tRNA ligase) (AspRS)
          Length = 556

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 15/50 (30%), Positives = 29/50 (58%)
 Frame = +1

Query: 361 RQQQEEEMKRLQTEQNAAMKEAERLHREKVAAEKNGETDEADPMAVAEAQ 510
           ++ Q+E+ K+ + E+ A   EAER  REK AA ++   D    + + +++
Sbjct: 34  KKLQKEQEKQRKKEERALQLEAEREAREKKAAAEDTAKDNYGKLPLIQSR 83

---

>BAT2_HUMAN (P48634) Large proline-rich protein BAT2 (HLA-B-associated|
           transcript 2)
          Length = 2157

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +1

Query: 361 RQQQEEEMKRLQTEQNAAMKE-AERLHREKVAAEKNGETDEADPMAVAEAQA 513
           R+++EEE +R+Q E+ AA  E  +RL  +  A +K  + + A P A     A
Sbjct: 468 RRRREEEERRMQEERRAACAEKLKRLDEKFGAPDKRLKAEPAAPPAAPSTPA 519

---

>NCTR1_RAT (Q9Z0H5) Natural cytotoxicity triggering receptor 1 precursor|
           (Natural killer cell p46-related protein) (NKp46)
           (NK-p46) (Rat-activating receptor 1) (rAR-1) (Lymphocyte
           antigen 94 homolog) (NK receptor KILR-1) (NKACTR)
          Length = 325

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 331 VWADADTWFERQQQEEEMKRLQTEQNAAMKEAERLHREK 447
           VW  A+ W  R++  E++ RL + +    +   R H E+
Sbjct: 270 VWLLAEDWLSRRKDHEKLNRLTSWECRGRRRMHRYHEEE 308

---

>BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-associated|
           transcript 2)
          Length = 2158

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +1

Query: 361 RQQQEEEMKRLQTEQNAAMKE-AERLHREKVAAEKNGETDEADPMAVAEAQAV 516
           R+++EEE +R+Q E+ AA  E  +RL  +  A +K  + + A P     A A+
Sbjct: 466 RRRREEEERRMQEERRAACAEKLKRLDEKFGAPDKRLKAEPAAPPVTPAAPAL 518

---

>SEB1_SCHPO (Q9UTE3) Rpb7-binding protein seb1|
          Length = 620

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 43  VQKNTLYVGGLAEEVDEKILHAAFVPFGEVKDV 141
           V   TL++GG+   V E +L + F  FG V+ +
Sbjct: 403 VYSRTLFLGGITRSVREPVLRSMFERFGSVQSL 435

---

>ZN318_MOUSE (Q99PP2) Zinc finger protein 318 (Testicular zinc finger protein)|
          Length = 2025

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 13/53 (24%)
 Frame = +1

Query: 358 ERQQQEEEMKRLQTEQNAAMK-------EAERLHRE------KVAAEKNGETD 477
           ++Q+  EE ++L+TEQ A  K       E ERLH++      K   EK+G  D
Sbjct: 698 QKQKVIEEREKLKTEQEARQKKMFYLTTELERLHKQQGEMLRKKRREKDGHKD 750

---

>YCF2_OENPI (P31568) Protein ycf2 (Fragment)|
          Length = 721

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 358 ERQQQEEEMKRLQTEQNAAMKEAERLHREKVAAEKNGETDEADPM 492
           E ++ +EE   L  E+    +E + LH E+   E+  E +E D +
Sbjct: 542 EDEELDEEEDELDEEEEEPKEEEDELHEEEEEEEEEEEEEEEDEL 586

---

>TOLA_HAEIN (P44678) Protein tolA|
          Length = 372

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 367 QQEEEMKRLQTEQNAAMKEAERLHREKVAAEKNGETDEADPMAVAEA 507
           Q++EE+KR Q +Q     + ++    + A EK  + +EA     AEA
Sbjct: 103 QRQEELKRQQEQQRQQEIKKQQEQARQEALEKQKQAEEAKAKQAAEA 149

---

>TRHY_SHEEP (P22793) Trichohyalin|
          Length = 1549

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 10/29 (34%), Positives = 22/29 (75%)
 Frame = +1

Query: 361  RQQQEEEMKRLQTEQNAAMKEAERLHREK 447
            ++++EEE +R+Q +    +++ E+LHRE+
Sbjct: 1403 QREREEEKRRVQEQDRKFLEQEEQLHREE 1431

---

>CEP35_HUMAN (Q5VT06) Centrosome-associated protein 350 (Centrosome-associated|
            protein of 350 kDa)
          Length = 3117

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +1

Query: 364  QQQEEEMKRLQTEQNAAMKEAERLHREKVAAEKNGET 474
            QQ++ E+KRLQ    AA KE + + +++   EK  +T
Sbjct: 1751 QQEKAEIKRLQEANKAARKERQLILKQQEEIEKIRQT 1787

---

>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated|
           transcript 2)
          Length = 2161

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +1

Query: 361 RQQQEEEMKRLQTEQNAAMKE-AERLHREKVAAEKNGETDEADPMAVAEAQAV 516
           R+++EEE +R+Q E+ AA  E  +RL  +  A +K  + + A P     A A+
Sbjct: 467 RRRREEEERRMQEERRAACAEKLKRLDEKFGAPDKRLKAEPAAPPVTPPAPAL 519

---

>RADI_CHICK (Q9PU45) Radixin|
          Length = 583

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 358 ERQQQEEEMKRLQTEQNAAMKEAERLHREKVAAEK 462
           E ++Q      L  E+  A +EAERL +E+ AAE+
Sbjct: 364 ELEEQTRRALELDQERKRAKEEAERLEKERRAAEE 398

---

>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1|
          Length = 828

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 18/79 (22%), Positives = 33/79 (41%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLEREXXXXXXXXX 237
           L++  L     E+     F  +GE+++V  P++  T + + F  V F + E         
Sbjct: 303 LFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPENAIAAYEAQ 362

Query: 238 XXXELFGRVLTVNYAFPEK 294
                 GR+L +    P+K
Sbjct: 363 DGKIFQGRLLHILPGKPKK 381

---

>G3BP_HUMAN (Q13283) Ras-GTPase-activating protein-binding protein 1 (EC|
           3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP
           SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII)
          Length = 466

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +1

Query: 58  LYVGGLAEEVDEKILHAAFVPFGEVKDVKTPLDQATQKHRSFGFVTFLERE 210
           L++G L  EVD+  L   F  +G V +++     +  K  +FGFV F + E
Sbjct: 342 LFIGNLPHEVDKSELKDFFQSYGNVVELRI---NSGGKLPNFGFVVFDDSE 389

---

>BAT2_MACMU (Q5TM26) Large proline-rich protein BAT2 (HLA-B-associated|
           transcript 2)
          Length = 2160

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +1

Query: 361 RQQQEEEMKRLQTEQNAAMKE-AERLHREKVAAEKNGETDEADPMAVAEAQA 513
           R+++EEE +R+Q E+ AA  E  +RL  +  A +K  + + A P A     A
Sbjct: 468 RRRREEEERRMQEERRAACAEKLKRLDEKFGAPDKRLKAEPAAPPAAPSTPA 519


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.313    0.129    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,799,474
Number of Sequences: 219361
Number of extensions: 758595
Number of successful extensions: 3920
Number of sequences better than 10.0: 247
Number of HSP's better than 10.0 without gapping: 3433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3879
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3927707336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)

---