ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal29j07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 341 bits (172), Expect = 4e-91 Identities = 172/172 (100%) Strand = Plus / Plus Query: 1 ctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaaca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 515 ctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaaca 574 Query: 61 tcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 575 tcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagt 634 Query: 121 gtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccgg 172 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 635 gtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccgg 686
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 341 bits (172), Expect = 4e-91 Identities = 172/172 (100%) Strand = Plus / Plus Query: 1 ctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaaca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 260 ctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaaca 319 Query: 61 tcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 320 tcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagt 379 Query: 121 gtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccgg 172 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 380 gtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccgg 431
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 309 bits (156), Expect = 1e-81 Identities = 168/172 (97%) Strand = Plus / Plus Query: 1 ctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaaca 60 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 435 ctgctttcatggacaagcttgttgtccatctctccaagaacttcatgaccctgcccaaca 494 Query: 61 tcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 495 tcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatccttccagt 554 Query: 121 gtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccgg 172 |||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct: 555 gtgagcttgtcttcgccaagatgggcatcaacccaatcatgatgagtgccgg 606
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 266 bits (134), Expect = 2e-68 Identities = 161/170 (94%) Strand = Plus / Plus Query: 3 gctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatc 62 ||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||| Sbjct: 448 gctttcatggacaagctcgttgtccacctctccaagaacttcatgaccctgcccaacatc 507 Query: 63 aagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgt 122 |||||||||||||||||||||||||||||||| |||||||| || ||||| ||||||||| Sbjct: 508 aagatcccactcatcttgggtatctggggaggaaagggtcaggggaaatccttccagtgt 567 Query: 123 gagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccgg 172 |||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct: 568 gagcttgtcttcgccaagatgggcatcaacccaatcatgatgagtgccgg 617
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 266 bits (134), Expect = 2e-68 Identities = 161/170 (94%) Strand = Plus / Plus Query: 3 gctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatc 62 ||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||| Sbjct: 458 gctttcatggacaagctcgttgtccacctctccaagaacttcatgaccctgcccaacatc 517 Query: 63 aagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgt 122 |||||||||||||||||||||||||||||||| |||||||| || ||||| ||||||||| Sbjct: 518 aagatcccactcatcttgggtatctggggaggaaagggtcaggggaaatccttccagtgt 577 Query: 123 gagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccgg 172 |||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct: 578 gagcttgtcttcgccaagatgggcatcaacccaatcatgatgagtgccgg 627
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 230 bits (116), Expect = 1e-57 Identities = 158/172 (91%) Strand = Plus / Plus Query: 1 ctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaaca 60 ||||||||||||||||||| || ||||| ||||||| |||||||||||||| ||||||| Sbjct: 403 ctgctttcatggacaagctcgtcgtccacatctccaagaacttcatgaccctccccaaca 462 Query: 61 tcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagt 120 ||||| ||||||||||| ||||||||||||||||||||||||| |||||||| ||||||| Sbjct: 463 tcaaggtcccactcatcctgggtatctggggaggcaagggtcagggaaaatccttccagt 522 Query: 121 gtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccgg 172 ||||||| || |||||||||||||| |||||||||||||||||||| ||||| Sbjct: 523 gtgagctcgtcttcgccaagatggggatcaaccccatcatgatgagcgccgg 574
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 230 bits (116), Expect = 1e-57 Identities = 158/172 (91%) Strand = Plus / Plus Query: 1 ctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaaca 60 ||||||||||||||||||| || ||||| ||||||| |||||||||||||| ||||||| Sbjct: 402 ctgctttcatggacaagctcgtcgtccacatctccaagaacttcatgaccctccccaaca 461 Query: 61 tcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagt 120 ||||| ||||||||||| ||||||||||||||||||||||||| |||||||| ||||||| Sbjct: 462 tcaaggtcccactcatcctgggtatctggggaggcaagggtcagggaaaatccttccagt 521 Query: 121 gtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccgg 172 ||||||| || |||||||||||||| |||||||||||||||||||| ||||| Sbjct: 522 gtgagctcgtcttcgccaagatggggatcaaccccatcatgatgagcgccgg 573
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 230 bits (116), Expect = 1e-57 Identities = 158/172 (91%) Strand = Plus / Plus Query: 1 ctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaaca 60 ||||||||||||||||||| || ||||| ||||||| |||||||||||||| ||||||| Sbjct: 440 ctgctttcatggacaagctcgtcgtccacatctccaagaacttcatgaccctccccaaca 499 Query: 61 tcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagt 120 ||||| ||||||||||| ||||||||||||||||||||||||| |||||||| ||||||| Sbjct: 500 tcaaggtcccactcatcctgggtatctggggaggcaagggtcagggaaaatccttccagt 559 Query: 121 gtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccgg 172 ||||||| || |||||||||||||| |||||||||||||||||||| ||||| Sbjct: 560 gtgagctcgtcttcgccaagatggggatcaaccccatcatgatgagcgccgg 611
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 230 bits (116), Expect = 1e-57 Identities = 158/172 (91%) Strand = Plus / Plus Query: 1 ctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaaca 60 ||||||||||||||||||| || ||||| ||||||| |||||||||||||| ||||||| Sbjct: 439 ctgctttcatggacaagctcgtcgtccacatctccaagaacttcatgaccctccccaaca 498 Query: 61 tcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagt 120 ||||| ||||||||||| ||||||||||||||||||||||||| |||||||| ||||||| Sbjct: 499 tcaaggtcccactcatcctgggtatctggggaggcaagggtcagggaaaatccttccagt 558 Query: 121 gtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccgg 172 ||||||| || |||||||||||||| |||||||||||||||||||| ||||| Sbjct: 559 gtgagctcgtcttcgccaagatggggatcaaccccatcatgatgagcgccgg 610
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 230 bits (116), Expect = 1e-57 Identities = 158/172 (91%) Strand = Plus / Plus Query: 1 ctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaaca 60 ||||||||||||||||||| || ||||| ||||||| |||||||||||||| ||||||| Sbjct: 223 ctgctttcatggacaagctcgtcgtccacatctccaagaacttcatgaccctccccaaca 282 Query: 61 tcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagt 120 ||||| ||||||||||| ||||||||||||||||||||||||| |||||||| ||||||| Sbjct: 283 tcaaggtcccactcatcctgggtatctggggaggcaagggtcagggaaaatccttccagt 342 Query: 121 gtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccgg 172 ||||||| || |||||||||||||| |||||||||||||||||||| ||||| Sbjct: 343 gtgagctcgtcttcgccaagatggggatcaaccccatcatgatgagcgccgg 394
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 230 bits (116), Expect = 1e-57 Identities = 158/172 (91%) Strand = Plus / Plus Query: 1 ctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaaca 60 ||||||||||||||||||| || ||||| ||||||| |||||||||||||| ||||||| Sbjct: 444 ctgctttcatggacaagctcgtcgtccacatctccaagaacttcatgaccctccccaaca 503 Query: 61 tcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagt 120 ||||| ||||||||||| ||||||||||||||||||||||||| |||||||| ||||||| Sbjct: 504 tcaaggtcccactcatcctgggtatctggggaggcaagggtcagggaaaatccttccagt 563 Query: 121 gtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccgg 172 ||||||| || |||||||||||||| |||||||||||||||||||| ||||| Sbjct: 564 gtgagctcgtcttcgccaagatggggatcaaccccatcatgatgagcgccgg 615
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 230 bits (116), Expect = 1e-57 Identities = 158/172 (91%) Strand = Plus / Plus Query: 1 ctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaaca 60 ||||||||||||||||||| || ||||| ||||||| |||||||||||||| ||||||| Sbjct: 438 ctgctttcatggacaagctcgtcgtccacatctccaagaacttcatgaccctccccaaca 497 Query: 61 tcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagt 120 ||||| ||||||||||| ||||||||||||||||||||||||| |||||||| ||||||| Sbjct: 498 tcaaggtcccactcatcctgggtatctggggaggcaagggtcagggaaaatccttccagt 557 Query: 121 gtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccgg 172 ||||||| || |||||||||||||| |||||||||||||||||||| ||||| Sbjct: 558 gtgagctcgtcttcgccaagatggggatcaaccccatcatgatgagcgccgg 609
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 224 bits (113), Expect = 7e-56 Identities = 155/169 (91%) Strand = Plus / Plus Query: 4 ctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatca 63 |||||||||||||||| || ||||| ||||||| |||||||||||||| |||||||||| Sbjct: 414 ctttcatggacaagctcgtcgtccacatctccaagaacttcatgaccctccccaacatca 473 Query: 64 agatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtg 123 || ||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||| Sbjct: 474 aggtcccactcatcctgggtatctggggaggcaagggtcagggaaaatccttccagtgtg 533 Query: 124 agcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccgg 172 |||| || |||||||||||||| |||||||||||||||||||| ||||| Sbjct: 534 agctcgtcttcgccaagatggggatcaaccccatcatgatgagcgccgg 582
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 222 bits (112), Expect = 3e-55 Identities = 157/172 (91%) Strand = Plus / Plus Query: 1 ctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaaca 60 ||||||||||||||||||| || ||||| ||||||| |||||||||||||| ||||||| Sbjct: 451 ctgctttcatggacaagctcgtcgtccacatctccaagaacttcatgaccctccccaaca 510 Query: 61 tcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagt 120 ||||| ||||||||| | ||||||||||||||||||||||||| |||||||| ||||||| Sbjct: 511 tcaaggtcccactcaccctgggtatctggggaggcaagggtcagggaaaatccttccagt 570 Query: 121 gtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccgg 172 ||||||| || |||||||||||||| |||||||||||||||||||| ||||| Sbjct: 571 gtgagctcgtcttcgccaagatggggatcaaccccatcatgatgagcgccgg 622
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 196 bits (99), Expect = 2e-47 Identities = 138/151 (91%) Strand = Plus / Minus Query: 1 ctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaaca 60 ||||||||||||||||||| || ||||| ||||||| |||||||||||||| ||||||| Sbjct: 109394 ctgctttcatggacaagctcgtcgtccacatctccaagaacttcatgaccctccccaaca 109335 Query: 61 tcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagt 120 ||||| ||||||||||| ||||||||||||||||||||||||| |||||||| ||||||| Sbjct: 109334 tcaaggtcccactcatcctgggtatctggggaggcaagggtcagggaaaatccttccagt 109275 Query: 121 gtgagcttgtgttcgccaagatgggcatcaa 151 ||||||| || |||||||||||||| ||||| Sbjct: 109274 gtgagctcgtcttcgccaagatggggatcaa 109244 Score = 44.1 bits (22), Expect = 0.14 Identities = 34/38 (89%) Strand = Plus / Minus Query: 114 ttccagtgtgagcttgtgttcgccaagatgggcatcaa 151 ||||||||||| || || |||||||||||||| ||||| Sbjct: 112906 ttccagtgtgatctcgtcttcgccaagatggggatcaa 112869
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 196 bits (99), Expect = 2e-47 Identities = 138/151 (91%) Strand = Plus / Minus Query: 1 ctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaaca 60 ||||||||||||||||||| || ||||| ||||||| |||||||||||||| ||||||| Sbjct: 31271 ctgctttcatggacaagctcgtcgtccacatctccaagaacttcatgaccctccccaaca 31212 Query: 61 tcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagt 120 ||||| ||||||||||| ||||||||||||||||||||||||| |||||||| ||||||| Sbjct: 31211 tcaaggtcccactcatcctgggtatctggggaggcaagggtcagggaaaatccttccagt 31152 Query: 121 gtgagcttgtgttcgccaagatgggcatcaa 151 ||||||| || |||||||||||||| ||||| Sbjct: 31151 gtgagctcgtcttcgccaagatggggatcaa 31121 Score = 44.1 bits (22), Expect = 0.14 Identities = 34/38 (89%) Strand = Plus / Minus Query: 114 ttccagtgtgagcttgtgttcgccaagatgggcatcaa 151 ||||||||||| || || |||||||||||||| ||||| Sbjct: 34783 ttccagtgtgatctcgtcttcgccaagatggggatcaa 34746
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 196 bits (99), Expect = 2e-47 Identities = 138/151 (91%) Strand = Plus / Minus Query: 1 ctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaaca 60 ||||||||||||||||||| || ||||| ||||||| |||||||||||||| ||||||| Sbjct: 28304533 ctgctttcatggacaagctcgtcgtccacatctccaagaacttcatgaccctccccaaca 28304474 Query: 61 tcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagt 120 ||||| ||||||||||| ||||||||||||||||||||||||| |||||||| ||||||| Sbjct: 28304473 tcaaggtcccactcatcctgggtatctggggaggcaagggtcagggaaaatccttccagt 28304414 Query: 121 gtgagcttgtgttcgccaagatgggcatcaa 151 ||||||| || |||||||||||||| ||||| Sbjct: 28304413 gtgagctcgtcttcgccaagatggggatcaa 28304383 Score = 44.1 bits (22), Expect = 0.14 Identities = 34/38 (89%) Strand = Plus / Minus Query: 114 ttccagtgtgagcttgtgttcgccaagatgggcatcaa 151 ||||||||||| || || |||||||||||||| ||||| Sbjct: 28308045 ttccagtgtgatctcgtcttcgccaagatggggatcaa 28308008
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 196 bits (99), Expect = 2e-47 Identities = 138/151 (91%) Strand = Plus / Minus Query: 1 ctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaaca 60 ||||||||||||||||||| || ||||| ||||||| |||||||||||||| ||||||| Sbjct: 28286982 ctgctttcatggacaagctcgtcgtccacatctccaagaacttcatgaccctccccaaca 28286923 Query: 61 tcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagt 120 ||||| ||||||||||| ||||||||||||||||||||||||| |||||||| ||||||| Sbjct: 28286922 tcaaggtcccactcatcctgggtatctggggaggcaagggtcagggaaaatccttccagt 28286863 Query: 121 gtgagcttgtgttcgccaagatgggcatcaa 151 ||||||| || |||||||||||||| ||||| Sbjct: 28286862 gtgagctcgtcttcgccaagatggggatcaa 28286832 Score = 44.1 bits (22), Expect = 0.14 Identities = 34/38 (89%) Strand = Plus / Minus Query: 114 ttccagtgtgagcttgtgttcgccaagatgggcatcaa 151 ||||||||||| || || |||||||||||||| ||||| Sbjct: 28290494 ttccagtgtgatctcgtcttcgccaagatggggatcaa 28290457
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 188 bits (95), Expect = 4e-45 Identities = 149/167 (89%) Strand = Plus / Plus Query: 6 ttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaag 65 ||||||||||||||||| || || || |||| |||||||||| | |||||||||||||| Sbjct: 403 ttcatggacaagcttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaag 462 Query: 66 atcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgag 125 || || ||||| |||||||||||||||||||| |||||||| ||||| ||||| ||||| Sbjct: 463 attcctctcattttgggtatctggggaggcaaaggtcaagggaaatccttccaatgtgaa 522 Query: 126 cttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccgg 172 |||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct: 523 cttgtgttcgccaagatgggaatcaaccccatcatgatgagcgccgg 569
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 188 bits (95), Expect = 4e-45 Identities = 149/167 (89%) Strand = Plus / Plus Query: 6 ttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaag 65 ||||||||||||||||| || || || |||| |||||||||| | |||||||||||||| Sbjct: 266 ttcatggacaagcttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaag 325 Query: 66 atcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgag 125 || || ||||| |||||||||||||||||||| |||||||| ||||| ||||| ||||| Sbjct: 326 attcctctcattttgggtatctggggaggcaaaggtcaagggaaatccttccaatgtgaa 385 Query: 126 cttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccgg 172 |||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct: 386 cttgtgttcgccaagatgggaatcaaccccatcatgatgagcgccgg 432
>gb|AF047352.1|AF047352 Datisca glomerata rubisco activase precursor, mRNA, complete cds Length = 1634 Score = 186 bits (94), Expect = 1e-44 Identities = 151/170 (88%) Strand = Plus / Plus Query: 3 gctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatc 62 |||||||||||||||||||| || || || |||||||||||||||| || |||||||| Sbjct: 491 gctttcatggacaagcttgtcgttcacatcaccaaaaacttcatgactctccccaacata 550 Query: 63 aagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgt 122 ||| | || ||||| ||||||||||||||||| || |||||||| ||||| ||||||||| Sbjct: 551 aaggttcctctcattttgggtatctggggaggtaaaggtcaaggtaaatctttccagtgt 610 Query: 123 gagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccgg 172 |||||||| || ||||||||||| |||||||||||||||||||||||||| Sbjct: 611 gagcttgtctttgccaagatgggaatcaaccccatcatgatgagtgccgg 660
>gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase alpha 2 mRNA, complete cds Length = 1433 Score = 182 bits (92), Expect = 2e-43 Identities = 152/172 (88%) Strand = Plus / Plus Query: 1 ctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaaca 60 |||| |||||||||||||||||||| || || |||| ||||||||| |||| || |||| Sbjct: 287 ctgcattcatggacaagcttgttgttcacatcaccaagaacttcatgtccctccctaaca 346 Query: 61 tcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagt 120 | ||| | || || ||||||||||| ||||||||||| |||||||||||||| ||||| | Sbjct: 347 ttaaggttcctctaatcttgggtatttggggaggcaaaggtcaaggaaaatctttccaat 406 Query: 121 gtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccgg 172 ||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 407 gtgagcttgtgtttgccaagatgggtatcaaccccatcatgatgagtgccgg 458
>gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds Length = 1832 Score = 182 bits (92), Expect = 2e-43 Identities = 146/164 (89%) Strand = Plus / Plus Query: 9 atggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatc 68 ||||||||||||||||| || || |||| |||||| ||| | |||||||||||||||| Sbjct: 650 atggacaagcttgttgttcacatcaccaagaacttcttgaacttgcccaacatcaagata 709 Query: 69 ccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagctt 128 ||||||||||||||| | |||||||||||||||||||| ||||| ||||| ||||||||| Sbjct: 710 ccactcatcttgggtgtttggggaggcaagggtcaaggtaaatccttccaatgtgagctt 769 Query: 129 gtgttcgccaagatgggcatcaaccccatcatgatgagtgccgg 172 |||||||||||| | || || ||||||||||||||||||||||| Sbjct: 770 gtgttcgccaagttaggaataaaccccatcatgatgagtgccgg 813
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor, mRNA, partial cds Length = 1336 Score = 180 bits (91), Expect = 9e-43 Identities = 148/167 (88%) Strand = Plus / Plus Query: 6 ttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaag 65 |||||||||||||| || ||||| |||||||| ||||||||||||||||| ||||||||| Sbjct: 22 ttcatggacaagctcgtcgtccacctctccaagaacttcatgaccctgccaaacatcaag 81 Query: 66 atcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgag 125 | || |||||| ||||||||||||||||||| || || |||||||| ||||| || ||| Sbjct: 82 gttcccctcatcctgggtatctggggaggcaaaggccagggaaaatcgttccaatgcgag 141 Query: 126 cttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccgg 172 || || ||||||||||||||||||| ||||||||||||||| ||||| Sbjct: 142 ctggtcttcgccaagatgggcatcacccccatcatgatgagcgccgg 188
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 180 bits (91), Expect = 9e-43 Identities = 148/167 (88%) Strand = Plus / Plus Query: 6 ttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaag 65 |||||||||||||| || ||||| |||||||| ||||||||||||||||| ||||||||| Sbjct: 417 ttcatggacaagctcgtcgtccacctctccaagaacttcatgaccctgccaaacatcaag 476 Query: 66 atcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgag 125 | || |||||| ||||||||||||||||||| || || |||||||| ||||| || ||| Sbjct: 477 gttcccctcatcctgggtatctggggaggcaaaggccagggaaaatcgttccaatgcgag 536 Query: 126 cttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccgg 172 || || ||||||||||||||||||| ||||||||||||||| ||||| Sbjct: 537 ctggtcttcgccaagatgggcatcacccccatcatgatgagcgccgg 583
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 180 bits (91), Expect = 9e-43 Identities = 148/167 (88%) Strand = Plus / Plus Query: 6 ttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaag 65 ||||||||||||||||| || || || |||| |||||||||| | |||||||||||||| Sbjct: 102 ttcatggacaagcttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaag 161 Query: 66 atcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgag 125 || || ||||| |||||||||||||||||||| ||||| || ||||| ||||| ||||| Sbjct: 162 attcctctcattttgggtatctggggaggcaaaggtcaggggaaatccttccaatgtgaa 221 Query: 126 cttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccgg 172 |||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct: 222 cttgtgttcgccaagatgggaatcaaccccatcatgatgagcgccgg 268
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 180 bits (91), Expect = 9e-43 Identities = 148/167 (88%) Strand = Plus / Plus Query: 6 ttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaag 65 ||||||||||||||||| || || || |||| |||||||||| | |||||||||||||| Sbjct: 296 ttcatggacaagcttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaag 355 Query: 66 atcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgag 125 || || ||||| |||||||||||||||||||| ||||| || ||||| ||||| ||||| Sbjct: 356 attcctctcattttgggtatctggggaggcaaaggtcaggggaaatccttccaatgtgaa 415 Query: 126 cttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccgg 172 |||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct: 416 cttgtgttcgccaagatgggaatcaaccccatcatgatgagcgccgg 462
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 180 bits (91), Expect = 9e-43 Identities = 148/167 (88%) Strand = Plus / Plus Query: 6 ttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaag 65 |||||||||||||| | ||||| ||| |||| ||||||||||| || |||||||||||| Sbjct: 3138 ttcatggacaagctcatcgtccacctcgccaagaacttcatgacactccccaacatcaag 3197 Query: 66 atcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgag 125 | || |||||| |||||||||||||||||||||| || || || || |||||||||||| Sbjct: 3198 gttcctctcatcctgggtatctggggaggcaagggacagggcaagtcgttccagtgtgag 3257 Query: 126 cttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccgg 172 || |||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 3258 ctggtgttcgccaagatgggcatcaaccccatcatgatgagcgccgg 3304 Score = 174 bits (88), Expect = 6e-41 Identities = 88/88 (100%) Strand = Plus / Plus Query: 64 agatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtg 123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6070 agatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtg 6129 Query: 124 agcttgtgttcgccaagatgggcatcaa 151 |||||||||||||||||||||||||||| Sbjct: 6130 agcttgtgttcgccaagatgggcatcaa 6157 Score = 129 bits (65), Expect = 3e-27 Identities = 65/65 (100%) Strand = Plus / Plus Query: 1 ctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaaca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5856 ctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaaca 5915 Query: 61 tcaag 65 ||||| Sbjct: 5916 tcaag 5920 Score = 42.1 bits (21), Expect = 0.54 Identities = 21/21 (100%) Strand = Plus / Plus Query: 152 ccccatcatgatgagtgccgg 172 ||||||||||||||||||||| Sbjct: 6408 ccccatcatgatgagtgccgg 6428
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 180 bits (91), Expect = 9e-43 Identities = 148/167 (88%) Strand = Plus / Plus Query: 6 ttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaag 65 |||||||||||||| | ||||| ||| |||| ||||||||||| || |||||||||||| Sbjct: 416 ttcatggacaagctcatcgtccacctcgccaagaacttcatgacactccccaacatcaag 475 Query: 66 atcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgag 125 |||| |||||| |||||||||||||||||||||| || || || || |||||||| ||| Sbjct: 476 gtccctctcatcctgggtatctggggaggcaagggacagggcaagtcgttccagtgcgag 535 Query: 126 cttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccgg 172 || |||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 536 ctggtgttcgccaagatgggcatcaaccccatcatgatgagcgccgg 582
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 180 bits (91), Expect = 9e-43 Identities = 148/167 (88%) Strand = Plus / Plus Query: 6 ttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaag 65 |||||||||||||| | ||||| ||| |||| ||||||||||| || |||||||||||| Sbjct: 569 ttcatggacaagctcatcgtccacctcgccaagaacttcatgacactccccaacatcaag 628 Query: 66 atcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgag 125 | || |||||| |||||||||||||||||||||| || || || || |||||||||||| Sbjct: 629 gttcctctcatcctgggtatctggggaggcaagggacagggcaagtcgttccagtgtgag 688 Query: 126 cttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccgg 172 || |||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 689 ctggtgttcgccaagatgggcatcaaccccatcatgatgagcgccgg 735
>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1 mRNA, complete cds Length = 1559 Score = 170 bits (86), Expect = 9e-40 Identities = 149/170 (87%) Strand = Plus / Plus Query: 3 gctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatc 62 ||||||||||||||||||||||| || || |||| |||| ||||||||| || ||||| Sbjct: 475 gctttcatggacaagcttgttgttcacatcaccaagaactacatgacccttcctaacatt 534 Query: 63 aagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgt 122 ||| | || || ||||||||||| ||||||||||| |||||||||||||| ||||| ||| Sbjct: 535 aaggttcctcttatcttgggtatttggggaggcaaaggtcaaggaaaatctttccaatgt 594 Query: 123 gagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccgg 172 |||||||| || ||||||||||| ||||||||||| |||||||||||||| Sbjct: 595 gagcttgtctttgccaagatgggaatcaaccccattatgatgagtgccgg 644
>ref|NM_179989.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.2 mRNA, complete cds Length = 1815 Score = 168 bits (85), Expect = 3e-39 Identities = 148/169 (87%) Strand = Plus / Plus Query: 1 ctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaaca 60 ||||||||||||||||||||||||| || || |||| |||||| |||| ||||| |||| Sbjct: 578 ctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgactctgcctaaca 637 Query: 61 tcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagt 120 ||||| | ||||| || |||||||| ||||||||||| |||||||| ||||| ||||||| Sbjct: 638 tcaaggttccacttattttgggtatatggggaggcaaaggtcaaggtaaatccttccagt 697 Query: 121 gtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgc 169 |||||||||| | ||||||||||| |||||||| |||||||||||||| Sbjct: 698 gtgagcttgtcatggccaagatgggtatcaacccaatcatgatgagtgc 746
>ref|NM_179990.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.3 mRNA, complete cds Length = 1928 Score = 168 bits (85), Expect = 3e-39 Identities = 148/169 (87%) Strand = Plus / Plus Query: 1 ctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaaca 60 ||||||||||||||||||||||||| || || |||| |||||| |||| ||||| |||| Sbjct: 578 ctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgactctgcctaaca 637 Query: 61 tcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagt 120 ||||| | ||||| || |||||||| ||||||||||| |||||||| ||||| ||||||| Sbjct: 638 tcaaggttccacttattttgggtatatggggaggcaaaggtcaaggtaaatccttccagt 697 Query: 121 gtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgc 169 |||||||||| | ||||||||||| |||||||| |||||||||||||| Sbjct: 698 gtgagcttgtcatggccaagatgggtatcaacccaatcatgatgagtgc 746
>ref|NM_129531.2| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.1 mRNA, complete cds Length = 1833 Score = 168 bits (85), Expect = 3e-39 Identities = 148/169 (87%) Strand = Plus / Plus Query: 1 ctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaaca 60 ||||||||||||||||||||||||| || || |||| |||||| |||| ||||| |||| Sbjct: 607 ctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgactctgcctaaca 666 Query: 61 tcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagt 120 ||||| | ||||| || |||||||| ||||||||||| |||||||| ||||| ||||||| Sbjct: 667 tcaaggttccacttattttgggtatatggggaggcaaaggtcaaggtaaatccttccagt 726 Query: 121 gtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgc 169 |||||||||| | ||||||||||| |||||||| |||||||||||||| Sbjct: 727 gtgagcttgtcatggccaagatgggtatcaacccaatcatgatgagtgc 775
>gb|BT000710.1| Arabidopsis thaliana clone RAFL09-90-K08 (R19890) unknown protein (At2g39730) mRNA, complete cds Length = 1697 Score = 168 bits (85), Expect = 3e-39 Identities = 148/169 (87%) Strand = Plus / Plus Query: 1 ctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaaca 60 ||||||||||||||||||||||||| || || |||| |||||| |||| ||||| |||| Sbjct: 489 ctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgactctgcctaaca 548 Query: 61 tcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagt 120 ||||| | ||||| || |||||||| ||||||||||| |||||||| ||||| ||||||| Sbjct: 549 tcaaggttccacttattttgggtatatggggaggcaaaggtcaaggtaaatccttccagt 608 Query: 121 gtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgc 169 |||||||||| | ||||||||||| |||||||| |||||||||||||| Sbjct: 609 gtgagcttgtcatggccaagatgggtatcaacccaatcatgatgagtgc 657
>gb|BT000613.1| Arabidopsis thaliana Rubsico activase (At2g39730/T5I7.3) mRNA, complete cds Length = 1425 Score = 168 bits (85), Expect = 3e-39 Identities = 148/169 (87%) Strand = Plus / Plus Query: 1 ctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaaca 60 ||||||||||||||||||||||||| || || |||| |||||| |||| ||||| |||| Sbjct: 404 ctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgactctgcctaaca 463 Query: 61 tcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagt 120 ||||| | ||||| || |||||||| ||||||||||| |||||||| ||||| ||||||| Sbjct: 464 tcaaggttccacttattttgggtatatggggaggcaaaggtcaaggtaaatccttccagt 523 Query: 121 gtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgc 169 |||||||||| | ||||||||||| |||||||| |||||||||||||| Sbjct: 524 gtgagcttgtcatggccaagatgggtatcaacccaatcatgatgagtgc 572
>gb|AY056108.1| Arabidopsis thaliana At2g39730/T5I7.3_ mRNA, complete cds Length = 1674 Score = 168 bits (85), Expect = 3e-39 Identities = 148/169 (87%) Strand = Plus / Plus Query: 1 ctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaaca 60 ||||||||||||||||||||||||| || || |||| |||||| |||| ||||| |||| Sbjct: 492 ctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgactctgcctaaca 551 Query: 61 tcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagt 120 ||||| | ||||| || |||||||| ||||||||||| |||||||| ||||| ||||||| Sbjct: 552 tcaaggttccacttattttgggtatatggggaggcaaaggtcaaggtaaatccttccagt 611 Query: 121 gtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgc 169 |||||||||| | ||||||||||| |||||||| |||||||||||||| Sbjct: 612 gtgagcttgtcatggccaagatgggtatcaacccaatcatgatgagtgc 660
>gb|AY052703.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1693 Score = 168 bits (85), Expect = 3e-39 Identities = 148/169 (87%) Strand = Plus / Plus Query: 1 ctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaaca 60 ||||||||||||||||||||||||| || || |||| |||||| |||| ||||| |||| Sbjct: 481 ctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgactctgcctaaca 540 Query: 61 tcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagt 120 ||||| | ||||| || |||||||| ||||||||||| |||||||| ||||| ||||||| Sbjct: 541 tcaaggttccacttattttgggtatatggggaggcaaaggtcaaggtaaatccttccagt 600 Query: 121 gtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgc 169 |||||||||| | ||||||||||| |||||||| |||||||||||||| Sbjct: 601 gtgagcttgtcatggccaagatgggtatcaacccaatcatgatgagtgc 649
>gb|AY052290.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1655 Score = 168 bits (85), Expect = 3e-39 Identities = 148/169 (87%) Strand = Plus / Plus Query: 1 ctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaaca 60 ||||||||||||||||||||||||| || || |||| |||||| |||| ||||| |||| Sbjct: 489 ctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgactctgcctaaca 548 Query: 61 tcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagt 120 ||||| | ||||| || |||||||| ||||||||||| |||||||| ||||| ||||||| Sbjct: 549 tcaaggttccacttattttgggtatatggggaggcaaaggtcaaggtaaatccttccagt 608 Query: 121 gtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgc 169 |||||||||| | ||||||||||| |||||||| |||||||||||||| Sbjct: 609 gtgagcttgtcatggccaagatgggtatcaacccaatcatgatgagtgc 657
>gb|AF325049.2|AF325049 Arabidopsis thaliana At2g39730 (At2g39730/T5I7.3) mRNA, complete cds Length = 1674 Score = 168 bits (85), Expect = 3e-39 Identities = 148/169 (87%) Strand = Plus / Plus Query: 1 ctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaaca 60 ||||||||||||||||||||||||| || || |||| |||||| |||| ||||| |||| Sbjct: 492 ctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgactctgcctaaca 551 Query: 61 tcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagt 120 ||||| | ||||| || |||||||| ||||||||||| |||||||| ||||| ||||||| Sbjct: 552 tcaaggttccacttattttgggtatatggggaggcaaaggtcaaggtaaatccttccagt 611 Query: 121 gtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgc 169 |||||||||| | ||||||||||| |||||||| |||||||||||||| Sbjct: 612 gtgagcttgtcatggccaagatgggtatcaacccaatcatgatgagtgc 660
>gb|AY088487.1| Arabidopsis thaliana clone 7114 mRNA, complete sequence Length = 1787 Score = 168 bits (85), Expect = 3e-39 Identities = 148/169 (87%) Strand = Plus / Plus Query: 1 ctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaaca 60 ||||||||||||||||||||||||| || || |||| |||||| |||| ||||| |||| Sbjct: 607 ctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgactctgcctaaca 666 Query: 61 tcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagt 120 ||||| | ||||| || |||||||| ||||||||||| |||||||| ||||| ||||||| Sbjct: 667 tcaaggttccacttattttgggtatatggggaggcaaaggtcaaggtaaatccttccagt 726 Query: 121 gtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgc 169 |||||||||| | ||||||||||| |||||||| |||||||||||||| Sbjct: 727 gtgagcttgtcatggccaagatgggtatcaacccaatcatgatgagtgc 775
>gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA, complete cds; nuclear gene for chloroplast product Length = 1671 Score = 168 bits (85), Expect = 3e-39 Identities = 148/169 (87%) Strand = Plus / Plus Query: 1 ctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaaca 60 ||||||| |||||||||||||||| || || |||| |||||||||||| ||||||||| Sbjct: 482 ctgcttttctggacaagcttgttgttcacatcaccaagaacttcatgaccttgcccaaca 541 Query: 61 tcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagt 120 ||||| | || ||||| | |||||||||||||||||||| |||||||| || ||||| | Sbjct: 542 tcaaggttcctctcattcttggtatctggggaggcaagggacaaggaaagtctttccaat 601 Query: 121 gtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgc 169 |||||||||| || ||||||||||| ||||||||||||||||||||||| Sbjct: 602 gtgagcttgtctttgccaagatgggaatcaaccccatcatgatgagtgc 650
>gb|U35111.1|NTU35111 Nicotiana tabacum rubisco activase precursor (Rca) mRNA, complete cds Length = 1674 Score = 168 bits (85), Expect = 3e-39 Identities = 148/169 (87%) Strand = Plus / Plus Query: 1 ctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaaca 60 ||||||||||||||||||||||||| || || |||| |||||| ||| ||||||||| Sbjct: 469 ctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgaaattgcccaaca 528 Query: 61 tcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagt 120 ||||| | ||||| ||||||||||||||||||||||| |||||||| ||||||||||||| Sbjct: 529 tcaaggttccacttatcttgggtatctggggaggcaaaggtcaaggcaaatcattccagt 588 Query: 121 gtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgc 169 |||| ||||| ||| |||||||| ||||||||||| ||||||||||| Sbjct: 589 gtgaacttgtcttcagaaagatgggaatcaaccccattatgatgagtgc 637
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1694 Score = 167 bits (84), Expect = 1e-38 Identities = 144/164 (87%) Strand = Plus / Plus Query: 6 ttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaag 65 ||||||||||||||||| ||||| || |||| |||||| ||| || || ||||||||| Sbjct: 478 ttcatggacaagcttgtcgtccacatcaccaagaacttcttgagtctccctaacatcaag 537 Query: 66 atcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgag 125 || || || ||||||||||||||||||||||| |||||||||||||| ||||| ||||| Sbjct: 538 attcctctgatcttgggtatctggggaggcaaaggtcaaggaaaatctttccaatgtgaa 597 Query: 126 cttgtgttcgccaagatgggcatcaaccccatcatgatgagtgc 169 ||||| || ||||||||||| ||||||||||||||||||||||| Sbjct: 598 cttgtttttgccaagatgggaatcaaccccatcatgatgagtgc 641
>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1724 Score = 167 bits (84), Expect = 1e-38 Identities = 144/164 (87%) Strand = Plus / Plus Query: 6 ttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaag 65 ||||||||||||||||| ||||| || |||| |||||| ||| || || ||||||||| Sbjct: 478 ttcatggacaagcttgtcgtccacatcaccaagaacttcttgagtctccctaacatcaag 537 Query: 66 atcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgag 125 || || || ||||||||||||||||||||||| |||||||||||||| ||||| ||||| Sbjct: 538 attcctctgatcttgggtatctggggaggcaaaggtcaaggaaaatctttccaatgtgaa 597 Query: 126 cttgtgttcgccaagatgggcatcaaccccatcatgatgagtgc 169 ||||| || ||||||||||| ||||||||||||||||||||||| Sbjct: 598 cttgtttttgccaagatgggaatcaaccccatcatgatgagtgc 641
>gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2 mRNA, partial cds Length = 1462 Score = 167 bits (84), Expect = 1e-38 Identities = 150/172 (87%) Strand = Plus / Plus Query: 1 ctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaaca 60 |||| |||||||||||||||||||| || || ||| ||||||||| |||| || |||| Sbjct: 288 ctgcattcatggacaagcttgttgttcacatcagcaagaacttcatgtccctccctaaca 347 Query: 61 tcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagt 120 | ||| | || || ||| ||||||| ||||||||||| |||||||||||||| ||||| | Sbjct: 348 ttaaggttcctctaatcctgggtatttggggaggcaaaggtcaaggaaaatctttccaat 407 Query: 121 gtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccgg 172 ||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 408 gtgagcttgtgtttgccaagatgggtatcaaccccatcatgatgagtgccgg 459
>gb|AF041068.1|AF041068 Phaseolus vulgaris rubisco activase (Rca1) mRNA, complete cds Length = 1627 Score = 167 bits (84), Expect = 1e-38 Identities = 141/160 (88%) Strand = Plus / Plus Query: 10 tggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcc 69 |||||||||||||||| || || |||| |||||||||||| |||||||||||||| | | Sbjct: 487 tggacaagcttgttgttcacatcgccaagaacttcatgaccttgcccaacatcaaggttc 546 Query: 70 cactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttg 129 | ||||| | ||| |||||||||||||||| ||||||||||| ||||| |||||||||| Sbjct: 547 ctctcattcttggtgtctggggaggcaagggacaaggaaaatctttccaatgtgagcttg 606 Query: 130 tgttcgccaagatgggcatcaaccccatcatgatgagtgc 169 | || ||||||||||| ||||||||||||||||||||||| Sbjct: 607 tctttgccaagatgggaatcaaccccatcatgatgagtgc 646
>gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, complete cds Length = 1809 Score = 163 bits (82), Expect = 2e-37 Identities = 145/166 (87%) Strand = Plus / Plus Query: 4 ctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatca 63 |||||||||||||| ||||||| || || |||| |||| | ||| | |||| ||||||| Sbjct: 531 ctttcatggacaagattgttgttcacatcaccaagaactacttgaacttgcctaacatca 590 Query: 64 agatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtg 123 || | || || ||||||||||| ||||||||||| |||||||| ||||| ||||| |||| Sbjct: 591 aggttcccctgatcttgggtatttggggaggcaaaggtcaaggtaaatccttccaatgtg 650 Query: 124 agcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgc 169 |||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 651 agcttgtgttcgccaagatgggaatcaaccccatcatgatgagtgc 696
>gb|AF037361.1|AF037361 Lycopersicon pennellii rubisco activase mRNA, complete cds Length = 1656 Score = 161 bits (81), Expect = 8e-37 Identities = 147/169 (86%) Strand = Plus / Plus Query: 1 ctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaaca 60 |||||||||||||||| |||||||| || || |||| |||||| |||| ||||||||| Sbjct: 450 ctgctttcatggacaaacttgttgttcacatcaccaagaacttcttgacattgcccaaca 509 Query: 61 tcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagt 120 ||||| | ||||||||||||||| | ||||||||||| |||||||| ||||||||||| | Sbjct: 510 tcaaggttccactcatcttgggtgtatggggaggcaaaggtcaaggtaaatcattccaat 569 Query: 121 gtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgc 169 |||||||||| ||| |||||||| ||||||||||| ||||||||||| Sbjct: 570 gtgagcttgtcttcagaaagatgggaatcaaccccattatgatgagtgc 618
>emb|Z14980.1|NTRCAJQ4 N.tabacum Rca gene for ribulose bisphosphate carboxylase activase (pJQ4) Length = 1655 Score = 153 bits (77), Expect = 2e-34 Identities = 146/169 (86%) Strand = Plus / Plus Query: 4 ctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatca 63 |||||||||||||||||||||| || || |||| |||||| ||| |||||||||||| Sbjct: 442 ctttcatggacaagcttgttgttcacatcaccaagaacttcttgaaattgcccaacatca 501 Query: 64 agatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtg 123 || | |||||||| |||||| ||||||||||||| |||||||| ||||| |||||||||| Sbjct: 502 aggttccactcattttgggtgtctggggaggcaaaggtcaaggtaaatctttccagtgtg 561 Query: 124 agcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccgg 172 ||||||| ||| |||||||| |||||||| || |||||||||||||| Sbjct: 562 agcttgtcttcagaaagatgggaatcaaccctattatgatgagtgccgg 610
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 143 bits (72), Expect = 2e-31 Identities = 142/167 (85%) Strand = Plus / Plus Query: 6 ttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaag 65 |||||||||||||| || ||||| |||||||| ||||||||||||||||| ||||||||| Sbjct: 417 ttcatggacaagctcgtcgtccacctctccaagaacttcatgaccctgccaaacatcaag 476 Query: 66 atcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgag 125 | || |||||| |||||||| ||||||||| || || |||||||| ||||| || ||| Sbjct: 477 gttcccctcatcctgggtatcgtgggaggcaaaggccagggaaaatcgttccaatgcgag 536 Query: 126 cttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccgg 172 || || ||||||||||||||||||| ||||||||||| ||||| Sbjct: 537 ctggtcttcgccaagatgggcatcannnnnatcatgatgagcgccgg 583
>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase mRNA Length = 1853 Score = 139 bits (70), Expect = 3e-30 Identities = 145/170 (85%) Strand = Plus / Plus Query: 3 gctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatc 62 ||||| ||||||||||||||||| || || |||| |||||||||||||| || ||||| Sbjct: 491 gcttttatggacaagcttgttgttcacatcaccaagaacttcatgacccttcctaacatg 550 Query: 63 aagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgt 122 ||| | || |||||||||||||| ||||||||||| ||||| || || || |||||||| Sbjct: 551 aaggttcctctcatcttgggtatttggggaggcaaaggtcagggcaagtctttccagtgc 610 Query: 123 gagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccgg 172 |||||||| || ||||||||| | |||| ||| ||||||||||||||||| Sbjct: 611 gagcttgtctttgccaagatgagaatcagccctatcatgatgagtgccgg 660
>emb|X14212.1|ATRCA Arabidopsis thaliana mRNA for rubisco activase Length = 1652 Score = 139 bits (70), Expect = 3e-30 Identities = 147/170 (86%), Gaps = 2/170 (1%) Strand = Plus / Plus Query: 1 ctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaaca 60 ||||||||||||||||||||||||| || || |||| |||||| |||| ||||| |||| Sbjct: 473 ctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgactctgcctaaca 532 Query: 61 tcaagatcccactcatcttgggtatct-ggggaggcaagggtcaaggaaaatcattccag 119 ||||| | ||||| || ||||| ||| |||||||||| |||||||| ||||| |||||| Sbjct: 533 tcaaggttccacttattttgggc-tctcggggaggcaaaggtcaaggtaaatccttccag 591 Query: 120 tgtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgc 169 ||||||||||| | ||||||||||| |||||||| |||||||||||||| Sbjct: 592 tgtgagcttgtcatggccaagatgggtatcaacccaatcatgatgagtgc 641
>emb|AJ271896.1|PHA271896 Pinus halepensis partial mRNA for rubisco activase (rca gene) Length = 678 Score = 135 bits (68), Expect = 5e-29 Identities = 146/172 (84%) Strand = Plus / Plus Query: 1 ctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaaca 60 ||||||| ||||||||||||||||| || |||| ||||||||||||| | |||| |||| Sbjct: 167 ctgcttttatggacaagcttgttgttcacatctcgaaaaacttcatgaacttgcctaaca 226 Query: 61 tcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagt 120 ||||| | || ||||| | ||||| ||||||||||||||||||||||| || ||||| | Sbjct: 227 tcaaggttcctctcattcttggtatttggggaggcaagggtcaaggaaagtccttccaat 286 Query: 121 gtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgccgg 172 |||||||||| || || || |||| |||||||| || |||||||||||||| Sbjct: 287 gtgagcttgtatttgcaaaattgggaatcaacccaattatgatgagtgccgg 338
>gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence Length = 1519 Score = 129 bits (65), Expect = 3e-27 Identities = 143/169 (84%) Strand = Plus / Plus Query: 1 ctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaaca 60 ||||||||||||||||||||||||| || || |||| |||||| | || ||||||||| Sbjct: 486 ctgctttcatggacaagcttgttgttcacatcaccaagaacttcttaacgttgcccaaca 545 Query: 61 tcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagt 120 ||||| | ||||| || |||||| | |||||||| || |||||||| ||||||||||| | Sbjct: 546 tcaaggttccacttattttgggtgtttggggaggaaaaggtcaaggtaaatcattccaat 605 Query: 121 gtgagcttgtgttcgccaagatgggcatcaaccccatcatgatgagtgc 169 |||||||||| ||| |||||||| |||||||| || ||||||||||| Sbjct: 606 gtgagcttgtcttcagaaagatgggaatcaacccaattatgatgagtgc 654
>gb|S45033.1| rubisco activase, ribulosebisphosphate carboxylase/oxygenase activase {alternatively spliced} [spinach, Genomic, 3691 nt] Length = 3691 Score = 105 bits (53), Expect = 4e-20 Identities = 71/77 (92%) Strand = Plus / Plus Query: 64 agatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtg 123 |||| ||||||||||||||| | |||||||||||||||||||| ||||| ||||| |||| Sbjct: 2238 agataccactcatcttgggtgtttggggaggcaagggtcaaggtaaatccttccaatgtg 2297 Query: 124 agcttgtgttcgccaag 140 ||||||||||||||||| Sbjct: 2298 agcttgtgttcgccaag 2314 Score = 50.1 bits (25), Expect = 0.002 Identities = 49/57 (85%) Strand = Plus / Plus Query: 9 atggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaag 65 ||||||||||||||||| || || |||| |||||| ||| | |||||||||||||| Sbjct: 2089 atggacaagcttgttgttcacatcaccaagaacttcttgaacttgcccaacatcaag 2145 Score = 42.1 bits (21), Expect = 0.54 Identities = 21/21 (100%) Strand = Plus / Plus Query: 152 ccccatcatgatgagtgccgg 172 ||||||||||||||||||||| Sbjct: 2421 ccccatcatgatgagtgccgg 2441
>gb|AF052424.1|AF052424 Datisca glomerata rubisco activase precursor, gene, partial cds Length = 1216 Score = 95.6 bits (48), Expect = 4e-17 Identities = 72/80 (90%) Strand = Plus / Plus Query: 72 ctcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtg 131 ||||| ||||||||||||||||| || |||||||| ||||| ||||||||||||||||| Sbjct: 186 ctcattttgggtatctggggaggtaaaggtcaaggtaaatctttccagtgtgagcttgtc 245 Query: 132 ttcgccaagatgggcatcaa 151 || ||||||||||| ||||| Sbjct: 246 tttgccaagatgggaatcaa 265 Score = 54.0 bits (27), Expect = 1e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 3 gctttcatggacaagcttgttgtccatctctccaaaaacttcatgac 49 |||||||||||||||||||| || || || |||||||||||||||| Sbjct: 21 gctttcatggacaagcttgtcgttcacatcaccaaaaacttcatgac 67 Score = 42.1 bits (21), Expect = 0.54 Identities = 21/21 (100%) Strand = Plus / Plus Query: 152 ccccatcatgatgagtgccgg 172 ||||||||||||||||||||| Sbjct: 467 ccccatcatgatgagtgccgg 487
>gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map CIC10A06, complete sequence Length = 92624 Score = 85.7 bits (43), Expect = 4e-14 Identities = 73/83 (87%) Strand = Plus / Minus Query: 69 ccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagctt 128 ||||| || |||||||| ||||||||||| |||||||| ||||| ||||||||||||||| Sbjct: 14733 ccacttattttgggtatatggggaggcaaaggtcaaggtaaatccttccagtgtgagctt 14674 Query: 129 gtgttcgccaagatgggcatcaa 151 || | ||||||||||| ||||| Sbjct: 14673 gtcatggccaagatgggtatcaa 14651 Score = 65.9 bits (33), Expect = 4e-08 Identities = 57/65 (87%) Strand = Plus / Minus Query: 1 ctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaaca 60 ||||||||||||||||||||||||| || || |||| |||||| |||| ||||| |||| Sbjct: 14900 ctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgactctgcctaaca 14841 Query: 61 tcaag 65 ||||| Sbjct: 14840 tcaag 14836
>emb|X67674.1|CSRUBAC C.sativus mRNA for rubisco activase Length = 2031 Score = 85.7 bits (43), Expect = 4e-14 Identities = 109/131 (83%) Strand = Plus / Plus Query: 39 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 98 |||||| ||||||| || ||||| ||| | || ||||| ||||| | |||||||| || Sbjct: 522 aacttcttgaccctcccgaacattaaggttcctctcattctgggtgtttggggaggtaaa 581 Query: 99 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaaccccatc 158 ||||||||||| || ||||||||||| ||||| || || |||||||| |||||||| || Sbjct: 582 ggtcaaggaaagtctttccagtgtgaacttgtatttgctaagatgggaatcaaccctatt 641 Query: 159 atgatgagtgc 169 ||||||||||| Sbjct: 642 atgatgagtgc 652
>gb|M86720.1|ATHRBCOALP Arabidopisis thaliana ribulose bisphosphate carboxylase/oxygenase activase (rca) gene, complete cds Length = 3974 Score = 85.7 bits (43), Expect = 4e-14 Identities = 73/83 (87%) Strand = Plus / Plus Query: 69 ccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagctt 128 ||||| || |||||||| ||||||||||| |||||||| ||||| ||||||||||||||| Sbjct: 2550 ccacttattttgggtatatggggaggcaaaggtcaaggtaaatccttccagtgtgagctt 2609 Query: 129 gtgttcgccaagatgggcatcaa 151 || | ||||||||||| ||||| Sbjct: 2610 gtcatggccaagatgggtatcaa 2632 Score = 65.9 bits (33), Expect = 4e-08 Identities = 57/65 (87%) Strand = Plus / Plus Query: 1 ctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaaca 60 ||||||||||||||||||||||||| || || |||| |||||| |||| ||||| |||| Sbjct: 2383 ctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgactctgcctaaca 2442 Query: 61 tcaag 65 ||||| Sbjct: 2443 tcaag 2447
>gb|AY130300.1| Medicago sativa rubisco activase (Rca) mRNA, partial cds Length = 1063 Score = 81.8 bits (41), Expect = 6e-13 Identities = 65/73 (89%) Strand = Plus / Plus Query: 97 agggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaacccca 156 |||| ||||||||||| ||||| ||||||||| || ||||||||||| |||||||||| Sbjct: 7 agggacaaggaaaatctttccaagctgagcttgtctttgccaagatgggaatcaacccca 66 Query: 157 tcatgatgagtgc 169 ||||||||||||| Sbjct: 67 tcatgatgagtgc 79
>gb|AF114155.1|AF114155 Artemisia annua ribulose-1,5-bisphosphate carboxylase/oxygenase activase pseudogene, partial sequence Length = 472 Score = 81.8 bits (41), Expect = 6e-13 Identities = 68/77 (88%) Strand = Plus / Plus Query: 96 aagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaacccc 155 ||||||||||||||||| ||||| ||||| ||||| || ||||||||||| |||| || Sbjct: 1 aagggtcaaggaaaatctttccaatgtgaacttgtttttgccaagatgggaatcactcct 60 Query: 156 atcatgatgagtgccgg 172 ||||||||||||||||| Sbjct: 61 atcatgatgagtgccgg 77
>gb|AC135233.19| Medicago truncatula clone mth2-14c14, complete sequence Length = 108028 Score = 79.8 bits (40), Expect = 2e-12 Identities = 76/88 (86%) Strand = Plus / Minus Query: 63 aagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgt 122 ||||| || ||||| ||||| || ||||||||||| ||||||||||| ||||| || ||| Sbjct: 7541 aagattcctctcatattgggcatttggggaggcaaaggtcaaggaaagtcatttcaatgt 7482 Query: 123 gagcttgtgttcgccaagatgggcatca 150 |||||||| || ||||||||||| |||| Sbjct: 7481 gagcttgtatttgccaagatgggaatca 7454
>gb|AC130652.27| Medicago truncatula clone mth1-1k12, complete sequence Length = 105218 Score = 77.8 bits (39), Expect = 1e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 81 ggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaag 140 |||||||||||||| || |||||||||||||| ||||| ||||||||| || |||||| Sbjct: 104933 ggtatctggggaggtaaaggtcaaggaaaatctttccaagctgagcttgtctttgccaag 104874 Query: 141 atgggcatcaa 151 ||||||||||| Sbjct: 104873 atgggcatcaa 104863
>gb|AC129090.22| Medicago truncatula clone mth2-14i8, complete sequence Length = 163160 Score = 77.8 bits (39), Expect = 1e-11 Identities = 63/71 (88%) Strand = Plus / Minus Query: 81 ggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaag 140 |||||||||||||| || |||||||||||||| ||||| ||||||||| || |||||| Sbjct: 83958 ggtatctggggaggtaaaggtcaaggaaaatctttccaagctgagcttgtctttgccaag 83899 Query: 141 atgggcatcaa 151 ||||||||||| Sbjct: 83898 atgggcatcaa 83888 Score = 42.1 bits (21), Expect = 0.54 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1 ctgctttcatggacaagcttgttgt 25 ||||||| ||||||||||||||||| Sbjct: 84264 ctgcttttatggacaagcttgttgt 84240
>emb|Y10657.1|CLRCAGENE C.littorale rca gene Length = 2513 Score = 63.9 bits (32), Expect = 1e-07 Identities = 65/76 (85%) Strand = Plus / Plus Query: 34 ccaaaaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggag 93 |||| ||||||||| ||||||||| |||||| | || |||||| ||||||||||||| | Sbjct: 1177 ccaagaacttcatggacctgcccaagatcaaggttcccctcatcctgggtatctggggtg 1236 Query: 94 gcaagggtcaaggaaa 109 ||||||| || ||||| Sbjct: 1237 gcaagggccagggaaa 1252
>gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate carboxylase/oxygenase activase mRNA, complete cds Length = 1693 Score = 54.0 bits (27), Expect = 1e-04 Identities = 57/67 (85%) Strand = Plus / Plus Query: 34 ccaaaaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggag 93 |||| ||||||||| ||||||||| |||||| | || ||||| ||||||||||||| | Sbjct: 406 ccaagaacttcatggacctgcccaagatcaaggtgcccctcattctgggtatctggggtg 465 Query: 94 gcaaggg 100 ||||||| Sbjct: 466 gcaaggg 472
>gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) gene, complete cds Length = 4500 Score = 46.1 bits (23), Expect = 0.034 Identities = 44/51 (86%) Strand = Plus / Plus Query: 50 cctgcccaacatcaagatcccactcatcttgggtatctggggaggcaaggg 100 ||||||||| |||||| | || ||||| ||||||||||||| |||||||| Sbjct: 1634 cctgcccaagatcaaggtgcccctcattctgggtatctggggtggcaaggg 1684
>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence Length = 2107794 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 ccctgcccaacatcaagatc 68 |||||||||||||||||||| Sbjct: 1130357 ccctgcccaacatcaagatc 1130376
>gb|AC009991.5|ATAC009991 Arabidopsis thaliana chromosome III BAC F9F8 genomic sequence, complete sequence Length = 101284 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 ttccagtgtgagcttgtgtt 133 |||||||||||||||||||| Sbjct: 97287 ttccagtgtgagcttgtgtt 97268
>gb|AC108471.3| Homo sapiens BAC clone RP11-539G18 from 4, complete sequence Length = 141442 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 gtccatctctccaaaaactt 43 |||||||||||||||||||| Sbjct: 63248 gtccatctctccaaaaactt 63229
>gb|AE009524.1| Brucella melitensis 16M chromosome I, section 81 of 195 of the complete sequence Length = 10900 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 ccctgcccaacatcaagatc 68 |||||||||||||||||||| Sbjct: 7760 ccctgcccaacatcaagatc 7741
>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence Length = 2124241 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 ccctgcccaacatcaagatc 68 |||||||||||||||||||| Sbjct: 1147720 ccctgcccaacatcaagatc 1147739
>ref|XM_312558.2| Anopheles gambiae str. PEST ENSANGP00000014302 (ENSANGG00000011813), partial mRNA Length = 1773 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 tcgccaagatgggcatcaac 152 |||||||||||||||||||| Sbjct: 641 tcgccaagatgggcatcaac 660
>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain 2308 Length = 2121359 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 ccctgcccaacatcaagatc 68 |||||||||||||||||||| Sbjct: 1144872 ccctgcccaacatcaagatc 1144891
>gb|U51683.1|BAU51683 Brucella abortus phosphatidate cytidyltransferase (cdsA), group 1 outer membrane protein (omp1), LpxD (lpxD), FabZ (fabZ), and LpxA (lpxA) genes, complete cds Length = 8895 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 ccctgcccaacatcaagatc 68 |||||||||||||||||||| Sbjct: 8238 ccctgcccaacatcaagatc 8219
>gb|AC168315.2| Mus musculus BAC clone RP23-318O7 from chromosome 10, complete sequence Length = 189627 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 89 gggaggcaagggtcaagga 107 ||||||||||||||||||| Sbjct: 77587 gggaggcaagggtcaagga 77605
>gb|AC167129.5| Mus musculus chromosome 5, clone RP23-397D16, complete sequence Length = 197551 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 63 aagatcccactcatcttgg 81 ||||||||||||||||||| Sbjct: 191653 aagatcccactcatcttgg 191671
>gb|AC159425.1| Trypanosoma brucei chromosome 3 clone RPCI93-27F10, complete sequence Length = 135196 Score = 38.2 bits (19), Expect = 8.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 34 ccaaaaacttcatgaccctgccc 56 ||||||| ||||||||||||||| Sbjct: 22283 ccaaaaaattcatgaccctgccc 22305
>gb|AC103360.9| Mus musculus chromosome 8, clone RP24-414A22, complete sequence Length = 172618 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 109 aatcattccagtgtgagct 127 ||||||||||||||||||| Sbjct: 35534 aatcattccagtgtgagct 35516
>gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence Length = 1653225 Score = 38.2 bits (19), Expect = 8.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 34 ccaaaaacttcatgaccctgccc 56 ||||||| ||||||||||||||| Sbjct: 262594 ccaaaaaattcatgaccctgccc 262572
>gb|AC166816.2| Mus musculus chromosome 5, clone RP24-321O22, complete sequence Length = 156357 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 63 aagatcccactcatcttgg 81 ||||||||||||||||||| Sbjct: 125425 aagatcccactcatcttgg 125407
>gb|AC114819.4| Mus musculus BAC clone RP23-52J20 from chromosome 8, complete sequence Length = 204239 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 109 aatcattccagtgtgagct 127 ||||||||||||||||||| Sbjct: 156544 aatcattccagtgtgagct 156526
>gb|AC124607.4| Mus musculus BAC clone RP23-84H10 from chromosome 12, complete sequence Length = 168842 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 98 gggtcaaggaaaatcattc 116 ||||||||||||||||||| Sbjct: 72360 gggtcaaggaaaatcattc 72342
>gb|AC146608.2| Mus musculus BAC clone RP23-159D24 from chromosome 12, complete sequence Length = 173569 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 98 gggtcaaggaaaatcattc 116 ||||||||||||||||||| Sbjct: 157370 gggtcaaggaaaatcattc 157388
>gb|AC135253.2| Homo sapiens 3 BAC RP11-324L7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 154492 Score = 38.2 bits (19), Expect = 8.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 27 catctctccaaaaacttcatgac 49 |||||| |||||||||||||||| Sbjct: 147596 catctcaccaaaaacttcatgac 147574
>gb|AC125473.12| Medicago truncatula clone mth2-8j13, complete sequence Length = 103966 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 22 ttgtccatctctccaaaaa 40 ||||||||||||||||||| Sbjct: 69212 ttgtccatctctccaaaaa 69230
>gb|AC126014.6| Medicago truncatula clone mth2-18j5, complete sequence Length = 113200 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 22 ttgtccatctctccaaaaa 40 ||||||||||||||||||| Sbjct: 30426 ttgtccatctctccaaaaa 30408
>emb|AL138834.28| Human DNA sequence from clone RP11-113A10 on chromosome 9 Contains three seven transmembrane helix receptor pseudogenes, a pseudogene similar to part of a seven transmembrane helix receptor, the RECK gene for reversion-inducing-cysteine-rich protein with kazal motifs (ST15, hRECK) and a CpG island, complete sequence Length = 123413 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 39 aacttcatgaccctgccca 57 ||||||||||||||||||| Sbjct: 27323 aacttcatgaccctgccca 27305
>gb|AC131068.11| Mus musculus chromosome 15, clone RP23-383I12, complete sequence Length = 183651 Score = 38.2 bits (19), Expect = 8.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 108 aaatcattccagtgtgagcttgt 130 |||||||| |||||||||||||| Sbjct: 126919 aaatcattgcagtgtgagcttgt 126897
>gb|AC114497.1| Homo sapiens chromosome 1 clone RP11-568G23, complete sequence Length = 127715 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 25 tccatctctccaaaaactt 43 ||||||||||||||||||| Sbjct: 33847 tccatctctccaaaaactt 33829
>gb|CP000134.1| Rhizobium etli CFN 42 plasmid p42a, complete sequence Length = 194229 Score = 38.2 bits (19), Expect = 8.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 94 gcaagggtcaaggaaaatcattc 116 ||||||| ||||||||||||||| Sbjct: 140671 gcaaggggcaaggaaaatcattc 140649
>gb|AC097526.3| Homo sapiens BAC clone RP11-627H22 from 4, complete sequence Length = 144324 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 90 ggaggcaagggtcaaggaa 108 ||||||||||||||||||| Sbjct: 79706 ggaggcaagggtcaaggaa 79688
>gb|AC107208.6| Homo sapiens BAC clone RP13-487K5 from 4, complete sequence Length = 81763 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 90 ggaggcaagggtcaaggaa 108 ||||||||||||||||||| Sbjct: 13100 ggaggcaagggtcaaggaa 13082
>gb|AC116565.4| Homo sapiens BAC clone RP11-1263C18 from 4, complete sequence Length = 97217 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 27 catctctccaaaaacttca 45 ||||||||||||||||||| Sbjct: 26779 catctctccaaaaacttca 26797
>dbj|AK195458.1| Mus musculus cDNA, clone:Y1G0118I21, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000018441, based on BLAT search Length = 352 Score = 38.2 bits (19), Expect = 8.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 52 tgcccaacatcaagatcccactc 74 |||||| |||||||||||||||| Sbjct: 244 tgcccaccatcaagatcccactc 266
>gb|AC007228.1|AC007228 Homo sapiens chromosome 19, BAC 37295 (CIT-B-21A4), complete sequence Length = 130067 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 36 aaaaacttcatgaccctgc 54 ||||||||||||||||||| Sbjct: 125636 aaaaacttcatgaccctgc 125654
>dbj|AP000999.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-667I23, complete sequence Length = 189892 Score = 38.2 bits (19), Expect = 8.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 103 aaggaaaatcattccagtgtgag 125 ||||| ||||||||||||||||| Sbjct: 162617 aaggacaatcattccagtgtgag 162595
>dbj|AP002853.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-46K15, complete sequence Length = 177463 Score = 38.2 bits (19), Expect = 8.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 103 aaggaaaatcattccagtgtgag 125 ||||| ||||||||||||||||| Sbjct: 80180 aaggacaatcattccagtgtgag 80158
>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome Length = 5411809 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 28 atctctccaaaaacttcat 46 ||||||||||||||||||| Sbjct: 2545973 atctctccaaaaacttcat 2545955
>emb|AL162084.1|HSM802622 Homo sapiens mRNA; cDNA DKFZp434M1131 (from clone DKFZp434M1131) Length = 1430 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 27 catctctccaaaaacttca 45 ||||||||||||||||||| Sbjct: 1192 catctctccaaaaacttca 1210
>dbj|AB065490.1| Homo sapiens gene for seven transmembrane helix receptor, complete cds, isolate:CBRC7TM_53 Length = 12932 Score = 38.2 bits (19), Expect = 8.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 39 aacttcatgaccctgccca 57 ||||||||||||||||||| Sbjct: 1561 aacttcatgaccctgccca 1579 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,709,739 Number of Sequences: 3902068 Number of extensions: 1709739 Number of successful extensions: 113701 Number of sequences better than 10.0: 102 Number of HSP's better than 10.0 without gapping: 102 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 113400 Number of HSP's gapped (non-prelim): 300 length of query: 172 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 150 effective length of database: 17,147,199,772 effective search space: 2572079965800 effective search space used: 2572079965800 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
