ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal29f20 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK112051.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-104-E03, full insert sequence Length = 636 Score = 363 bits (183), Expect = 4e-97 Identities = 246/267 (92%) Strand = Plus / Plus Query: 99 cggcggcggagatgggcggcgaccatggcggccacggcccgagcggcggcgacttccggc 158 ||||||||| ||||||||||||||||||||| ||||||| | |||||||||||||||| Sbjct: 52 cggcggcggcgatgggcggcgaccatggcgggcacggccacggaggcggcgacttccggc 111 Query: 159 agaaggtgtggagcatgacgggcgggccctactgccggcccgtccactggcgccgcaaca 218 ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 112 agaaggtatggagcatgacgggcgggccctactgccggcccgtgcactggcgccgcaaca 171 Query: 219 ccgccatcgccatggtcggcatcttcctcgtctgcatccccatcgccatgaaatccgccg 278 |||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||| Sbjct: 172 ccgccatcgccatgttcggcgtcttcctcgtctgcatccccatcgccatgaagtccgccg 231 Query: 279 agctcgagcaacgcccgcaccacccagtccggccaatcccatcccagctttggtgcaaga 338 |||||||||||||||| || ||||| |||||||| |||||||| || ||||||||||| | Sbjct: 232 agctcgagcaacgcccacatcacccggtccggccgatcccatctcaactttggtgcaaaa 291 Query: 339 actttggcaagaaggaatactgaagga 365 ||||||||||||| || || ||||||| Sbjct: 292 actttggcaagaaagagtattgaagga 318
>dbj|AK099388.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076P14, full insert sequence Length = 473 Score = 363 bits (183), Expect = 4e-97 Identities = 246/267 (92%) Strand = Plus / Plus Query: 99 cggcggcggagatgggcggcgaccatggcggccacggcccgagcggcggcgacttccggc 158 ||||||||| ||||||||||||||||||||| ||||||| | |||||||||||||||| Sbjct: 41 cggcggcggcgatgggcggcgaccatggcgggcacggccacggaggcggcgacttccggc 100 Query: 159 agaaggtgtggagcatgacgggcgggccctactgccggcccgtccactggcgccgcaaca 218 ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 101 agaaggtatggagcatgacgggcgggccctactgccggcccgtgcactggcgccgcaaca 160 Query: 219 ccgccatcgccatggtcggcatcttcctcgtctgcatccccatcgccatgaaatccgccg 278 |||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||| Sbjct: 161 ccgccatcgccatgttcggcgtcttcctcgtctgcatccccatcgccatgaagtccgccg 220 Query: 279 agctcgagcaacgcccgcaccacccagtccggccaatcccatcccagctttggtgcaaga 338 |||||||||||||||| || ||||| |||||||| |||||||| || ||||||||||| | Sbjct: 221 agctcgagcaacgcccacatcacccggtccggccgatcccatctcaactttggtgcaaaa 280 Query: 339 actttggcaagaaggaatactgaagga 365 ||||||||||||| || || ||||||| Sbjct: 281 actttggcaagaaagagtattgaagga 307
>gb|AY104951.1| Zea mays PCO082478 mRNA sequence Length = 673 Score = 303 bits (153), Expect = 3e-79 Identities = 207/225 (92%) Strand = Plus / Plus Query: 142 cggcggcgacttccggcagaaggtgtggagcatgacgggcgggccctactgccggcccgt 201 ||||||||||||||| |||||||| ||||||||||||||||| || |||||||| ||||| Sbjct: 156 cggcggcgacttccgccagaaggtatggagcatgacgggcggcccgtactgccgccccgt 215 Query: 202 ccactggcgccgcaacaccgccatcgccatggtcggcatcttcctcgtctgcatccccat 261 |||||||||||| |||||||||||||||||| ||||| |||||||| ||||||||||||| Sbjct: 216 ccactggcgccgtaacaccgccatcgccatgttcggcgtcttcctcatctgcatccccat 275 Query: 262 cgccatgaaatccgccgagctcgagcaacgcccgcaccacccagtccggccaatcccatc 321 ||| ||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 276 cgctatgaagtccgcagagctcgagcaacgcccgcatcacccagtccggccaatcccatc 335 Query: 322 ccagctttggtgcaagaactttggcaagaaggaatactgaaggac 366 || || |||||||| |||||||| |||||||||||||||||||| Sbjct: 336 tcaactgtggtgcaaaaactttggtaagaaggaatactgaaggac 380
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 285 bits (144), Expect = 8e-74 Identities = 177/188 (94%) Strand = Plus / Minus Query: 99 cggcggcggagatgggcggcgaccatggcggccacggcccgagcggcggcgacttccggc 158 ||||||||| ||||||||||||||||||||| ||||||| | |||||||||||||||| Sbjct: 21962929 cggcggcggcgatgggcggcgaccatggcgggcacggccacggaggcggcgacttccggc 21962870 Query: 159 agaaggtgtggagcatgacgggcgggccctactgccggcccgtccactggcgccgcaaca 218 ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 21962869 agaaggtatggagcatgacgggcgggccctactgccggcccgtgcactggcgccgcaaca 21962810 Query: 219 ccgccatcgccatggtcggcatcttcctcgtctgcatccccatcgccatgaaatccgccg 278 |||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||| Sbjct: 21962809 ccgccatcgccatgttcggcgtcttcctcgtctgcatccccatcgccatgaagtccgccg 21962750 Query: 279 agctcgag 286 |||||||| Sbjct: 21962749 agctcgag 21962742 Score = 81.8 bits (41), Expect = 2e-12 Identities = 71/81 (87%) Strand = Plus / Minus Query: 285 agcaacgcccgcaccacccagtccggccaatcccatcccagctttggtgcaagaactttg 344 |||||||||| || ||||| |||||||| |||||||| || ||||||||||| ||||||| Sbjct: 21961212 agcaacgcccacatcacccggtccggccgatcccatctcaactttggtgcaaaaactttg 21961153 Query: 345 gcaagaaggaatactgaagga 365 ||||||| || || ||||||| Sbjct: 21961152 gcaagaaagagtattgaagga 21961132 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 acggcccgagcggcggcgac 151 |||||||||||||||||||| Sbjct: 11786254 acggcccgagcggcggcgac 11786273
>dbj|AP005396.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0635G10 Length = 146728 Score = 285 bits (144), Expect = 8e-74 Identities = 177/188 (94%) Strand = Plus / Minus Query: 99 cggcggcggagatgggcggcgaccatggcggccacggcccgagcggcggcgacttccggc 158 ||||||||| ||||||||||||||||||||| ||||||| | |||||||||||||||| Sbjct: 4993 cggcggcggcgatgggcggcgaccatggcgggcacggccacggaggcggcgacttccggc 4934 Query: 159 agaaggtgtggagcatgacgggcgggccctactgccggcccgtccactggcgccgcaaca 218 ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 4933 agaaggtatggagcatgacgggcgggccctactgccggcccgtgcactggcgccgcaaca 4874 Query: 219 ccgccatcgccatggtcggcatcttcctcgtctgcatccccatcgccatgaaatccgccg 278 |||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||| Sbjct: 4873 ccgccatcgccatgttcggcgtcttcctcgtctgcatccccatcgccatgaagtccgccg 4814 Query: 279 agctcgag 286 |||||||| Sbjct: 4813 agctcgag 4806 Score = 81.8 bits (41), Expect = 2e-12 Identities = 71/81 (87%) Strand = Plus / Minus Query: 285 agcaacgcccgcaccacccagtccggccaatcccatcccagctttggtgcaagaactttg 344 |||||||||| || ||||| |||||||| |||||||| || ||||||||||| ||||||| Sbjct: 3276 agcaacgcccacatcacccggtccggccgatcccatctcaactttggtgcaaaaactttg 3217 Query: 345 gcaagaaggaatactgaagga 365 ||||||| || || ||||||| Sbjct: 3216 gcaagaaagagtattgaagga 3196
>dbj|AP005090.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1065_E04 Length = 115865 Score = 285 bits (144), Expect = 8e-74 Identities = 177/188 (94%) Strand = Plus / Minus Query: 99 cggcggcggagatgggcggcgaccatggcggccacggcccgagcggcggcgacttccggc 158 ||||||||| ||||||||||||||||||||| ||||||| | |||||||||||||||| Sbjct: 93646 cggcggcggcgatgggcggcgaccatggcgggcacggccacggaggcggcgacttccggc 93587 Query: 159 agaaggtgtggagcatgacgggcgggccctactgccggcccgtccactggcgccgcaaca 218 ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 93586 agaaggtatggagcatgacgggcgggccctactgccggcccgtgcactggcgccgcaaca 93527 Query: 219 ccgccatcgccatggtcggcatcttcctcgtctgcatccccatcgccatgaaatccgccg 278 |||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||| Sbjct: 93526 ccgccatcgccatgttcggcgtcttcctcgtctgcatccccatcgccatgaagtccgccg 93467 Query: 279 agctcgag 286 |||||||| Sbjct: 93466 agctcgag 93459 Score = 81.8 bits (41), Expect = 2e-12 Identities = 71/81 (87%) Strand = Plus / Minus Query: 285 agcaacgcccgcaccacccagtccggccaatcccatcccagctttggtgcaagaactttg 344 |||||||||| || ||||| |||||||| |||||||| || ||||||||||| ||||||| Sbjct: 91929 agcaacgcccacatcacccggtccggccgatcccatctcaactttggtgcaaaaactttg 91870 Query: 345 gcaagaaggaatactgaagga 365 ||||||| || || ||||||| Sbjct: 91869 gcaagaaagagtattgaagga 91849
>gb|AY104915.1| Zea mays PCO082477 mRNA sequence Length = 1855 Score = 117 bits (59), Expect = 4e-23 Identities = 77/83 (92%) Strand = Plus / Plus Query: 284 gagcaacgcccgcaccacccagtccggccaatcccatcccagctttggtgcaagaacttt 343 |||||||||||||| ||||||||||||||||||||||| || || |||||||| |||||| Sbjct: 1616 gagcaacgcccgcatcacccagtccggccaatcccatctcaactgtggtgcaaaaacttt 1675 Query: 344 ggcaagaaggaatactgaaggac 366 || |||||||||||||||||||| Sbjct: 1676 ggtaagaaggaatactgaaggac 1698
>ref|NM_116283.2| Arabidopsis thaliana unknown protein AT4G00585 mRNA, complete cds Length = 558 Score = 50.1 bits (25), Expect = 0.008 Identities = 52/61 (85%) Strand = Plus / Plus Query: 206 tggcgccgcaacaccgccatcgccatggtcggcatcttcctcgtctgcatccccatcgcc 265 ||||| || ||||||||||| || ||| ||||| | ||||| || ||||||||||||||| Sbjct: 186 tggcgtcggaacaccgccattgctatgttcggcgttttccttgtgtgcatccccatcgcc 245 Query: 266 a 266 | Sbjct: 246 a 246
>gb|AY091239.1| Arabidopsis thaliana unknown protein (At4g00585) mRNA, complete cds Length = 298 Score = 50.1 bits (25), Expect = 0.008 Identities = 52/61 (85%) Strand = Plus / Plus Query: 206 tggcgccgcaacaccgccatcgccatggtcggcatcttcctcgtctgcatccccatcgcc 265 ||||| || ||||||||||| || ||| ||||| | ||||| || ||||||||||||||| Sbjct: 97 tggcgtcggaacaccgccattgctatgttcggcgttttccttgtgtgcatccccatcgcc 156 Query: 266 a 266 | Sbjct: 157 a 157
>gb|AY063842.1| Arabidopsis thaliana unknown protein (At4g00585) mRNA, complete cds Length = 565 Score = 50.1 bits (25), Expect = 0.008 Identities = 52/61 (85%) Strand = Plus / Plus Query: 206 tggcgccgcaacaccgccatcgccatggtcggcatcttcctcgtctgcatccccatcgcc 265 ||||| || ||||||||||| || ||| ||||| | ||||| || ||||||||||||||| Sbjct: 184 tggcgtcggaacaccgccattgctatgttcggcgttttccttgtgtgcatccccatcgcc 243 Query: 266 a 266 | Sbjct: 244 a 244
>emb|AL161472.2|ATCHRIV2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 2 Length = 197975 Score = 50.1 bits (25), Expect = 0.008 Identities = 52/61 (85%) Strand = Plus / Minus Query: 206 tggcgccgcaacaccgccatcgccatggtcggcatcttcctcgtctgcatccccatcgcc 265 ||||| || ||||||||||| || ||| ||||| | ||||| || ||||||||||||||| Sbjct: 58875 tggcgtcggaacaccgccattgctatgttcggcgttttccttgtgtgcatccccatcgcc 58816 Query: 266 a 266 | Sbjct: 58815 a 58815
>emb|BX828090.1|CNS0A3SJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH51ZB10 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1370 Score = 50.1 bits (25), Expect = 0.008 Identities = 52/61 (85%) Strand = Plus / Plus Query: 206 tggcgccgcaacaccgccatcgccatggtcggcatcttcctcgtctgcatccccatcgcc 265 ||||| || ||||||||||| || ||| ||||| | ||||| || ||||||||||||||| Sbjct: 189 tggcgtcggaacaccgccattgctatgttcggcgttttccttgtgtgcatccccatcgcc 248 Query: 266 a 266 | Sbjct: 249 a 249
>emb|BX827289.1|CNS0A3P8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS34ZC07 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1365 Score = 50.1 bits (25), Expect = 0.008 Identities = 52/61 (85%) Strand = Plus / Plus Query: 206 tggcgccgcaacaccgccatcgccatggtcggcatcttcctcgtctgcatccccatcgcc 265 ||||| || ||||||||||| || ||| ||||| | ||||| || ||||||||||||||| Sbjct: 173 tggcgtcggaacaccgccattgctatgttcggcgttttccttgtgtgcatccccatcgcc 232 Query: 266 a 266 | Sbjct: 233 a 233
>gb|AY085811.1| Arabidopsis thaliana clone 18459 mRNA, complete sequence Length = 550 Score = 50.1 bits (25), Expect = 0.008 Identities = 52/61 (85%) Strand = Plus / Plus Query: 206 tggcgccgcaacaccgccatcgccatggtcggcatcttcctcgtctgcatccccatcgcc 265 ||||| || ||||||||||| || ||| ||||| | ||||| || ||||||||||||||| Sbjct: 184 tggcgtcggaacaccgccattgctatgttcggcgttttccttgtgtgcatccccatcgcc 243 Query: 266 a 266 | Sbjct: 244 a 244
>dbj|AK118700.1| Arabidopsis thaliana mRNA for unknown protein, complete cds, clone: RAFL19-96-J18 Length = 552 Score = 50.1 bits (25), Expect = 0.008 Identities = 52/61 (85%) Strand = Plus / Plus Query: 206 tggcgccgcaacaccgccatcgccatggtcggcatcttcctcgtctgcatccccatcgcc 265 ||||| || ||||||||||| || ||| ||||| | ||||| || ||||||||||||||| Sbjct: 186 tggcgtcggaacaccgccattgctatgttcggcgttttccttgtgtgcatccccatcgcc 245 Query: 266 a 266 | Sbjct: 246 a 246
>gb|AF058919.2|F6N23 Arabidopsis thaliana BAC F6N23 Length = 91849 Score = 50.1 bits (25), Expect = 0.008 Identities = 52/61 (85%) Strand = Plus / Minus Query: 206 tggcgccgcaacaccgccatcgccatggtcggcatcttcctcgtctgcatccccatcgcc 265 ||||| || ||||||||||| || ||| ||||| | ||||| || ||||||||||||||| Sbjct: 40001 tggcgtcggaacaccgccattgctatgttcggcgttttccttgtgtgcatccccatcgcc 39942 Query: 266 a 266 | Sbjct: 39941 a 39941
>gb|AC148817.3| Medicago truncatula chromosome 7 BAC clone mth2-22c10, complete sequence Length = 123020 Score = 46.1 bits (23), Expect = 0.12 Identities = 44/51 (86%) Strand = Plus / Minus Query: 212 cgcaacaccgccatcgccatggtcggcatcttcctcgtctgcatccccatc 262 ||||||||||||||||| ||| |||| ||| ||||||| || || |||||| Sbjct: 50191 cgcaacaccgccatcgctatgttcggtatcgtcctcgtttgtattcccatc 50141 Score = 42.1 bits (21), Expect = 1.9 Identities = 51/61 (83%) Strand = Plus / Minus Query: 285 agcaacgcccgcaccacccagtccggccaatcccatcccagctttggtgcaagaactttg 344 ||||||| || || ||||| || || |||||||| ||||| | |||||||||||||||| Sbjct: 46621 agcaacgaccacatcacccggttcgtccaatcccttcccaaatgtggtgcaagaactttg 46562 Query: 345 g 345 | Sbjct: 46561 g 46561
>gb|AC102680.10| Mus musculus chromosome 8, clone RP24-88L18, complete sequence Length = 201260 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 378 ttcacaaagaaaatcctgttttt 400 ||||||||||||||||||||||| Sbjct: 89603 ttcacaaagaaaatcctgttttt 89625
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 221 gccatcgccatggtcggcatc 241 ||||||||||||||||||||| Sbjct: 1169646 gccatcgccatggtcggcatc 1169626
>gb|AC104012.11| Homo sapiens chromosome 8, clone RP11-281N10, complete sequence Length = 170668 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 373 agactttcacaaagaaaatcc 393 ||||||||||||||||||||| Sbjct: 95610 agactttcacaaagaaaatcc 95590
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 97 accggcggcggagatgggcggcgac 121 ||||||||||||||| ||||||||| Sbjct: 1951624 accggcggcggagatcggcggcgac 1951648
>gb|AF165147.1|AF165147 Homo sapiens chromosome 21q22.1, PAC I2280, complete sequence Length = 146735 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 380 cacaaagaaaatcctgttttt 400 ||||||||||||||||||||| Sbjct: 46044 cacaaagaaaatcctgttttt 46064
>dbj|BS000165.1| Pan troglodytes chromosome 22 clone:PTB-057B23, map 22, complete sequences Length = 142215 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 380 cacaaagaaaatcctgttttt 400 ||||||||||||||||||||| Sbjct: 97301 cacaaagaaaatcctgttttt 97321
>emb|AL163247.2|HS21C047 Homo sapiens chromosome 21 segment HS21C047 Length = 340000 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 380 cacaaagaaaatcctgttttt 400 ||||||||||||||||||||| Sbjct: 164522 cacaaagaaaatcctgttttt 164542
>emb|BX957275.7| Zebrafish DNA sequence from clone DKEY-220E22 in linkage group 20, complete sequence Length = 57535 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 375 actttcacaaagaaaatcctgtttt 399 ||||||||||| ||||||||||||| Sbjct: 50876 actttcacaaaaaaaatcctgtttt 50852
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 282 tcgagcaacgcccgcaccacc 302 ||||||||||||||||||||| Sbjct: 1505347 tcgagcaacgcccgcaccacc 1505327
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 114 gcggcgaccatggcggccacggccc 138 ||||||||||||||||| ||||||| Sbjct: 4010629 gcggcgaccatggcggcgacggccc 4010605 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 cagcagcggcgcggcccgcc 29 |||||||||||||||||||| Sbjct: 196015 cagcagcggcgcggcccgcc 195996
>emb|AL663011.2|OSJN00215 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0080H08, complete sequence Length = 138127 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 97 accggcggcggagatgggcggcgac 121 ||||||||||||||| ||||||||| Sbjct: 94861 accggcggcggagatcggcggcgac 94885
>ref|NM_193237.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1071 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 gggcggcgaccatggcggcc 131 |||||||||||||||||||| Sbjct: 316 gggcggcgaccatggcggcc 297
>gb|BT019290.1| Zea mays clone Contig963.F mRNA sequence Length = 760 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 314 atcccatcccagctttggtgcaag 337 ||||||||||| |||||||||||| Sbjct: 187 atcccatcccatctttggtgcaag 164
>gb|AC149783.2| Bos taurus BAC CH240-3K17 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 205084 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 408 tgccttcttttgtcataacc 427 |||||||||||||||||||| Sbjct: 24505 tgccttcttttgtcataacc 24486
>gb|AC161005.4| Pan troglodytes BAC clone CH251-668M6 from chromosome 7, complete sequence Length = 217746 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 386 gaaaatcctgtttttacctttgtg 409 |||||||||||||||| ||||||| Sbjct: 120963 gaaaatcctgtttttatctttgtg 120986
>gb|AY813451.1| Schistosoma japonicum SJCHGC08298 protein mRNA, complete cds Length = 844 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 379 tcacaaagaaaatcctgttt 398 |||||||||||||||||||| Sbjct: 119 tcacaaagaaaatcctgttt 138
>gb|AC159321.3| Mus musculus BAC clone RP23-18G14 from chromosome 6, complete sequence Length = 202584 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 382 caaagaaaatcctgtttttacctt 405 |||||||||||||||| ||||||| Sbjct: 150985 caaagaaaatcctgttcttacctt 150962
>gb|AC103934.10| Mus musculus chromosome 6, clone RP23-287O14, complete sequence Length = 208817 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 382 caaagaaaatcctgtttttacctt 405 |||||||||||||||| ||||||| Sbjct: 73953 caaagaaaatcctgttcttacctt 73976
>gb|AF457781.1| Schizothorax progastus haplotype SPR332-5f2 mitochondrial control region, partial sequence Length = 583 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 tttattatcacatacaagga 510 |||||||||||||||||||| Sbjct: 199 tttattatcacatacaagga 180
>gb|AF457780.1| Schizothorax progastus haplotype SPR332-3f2 mitochondrial control region, partial sequence Length = 585 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 tttattatcacatacaagga 510 |||||||||||||||||||| Sbjct: 199 tttattatcacatacaagga 180
>gb|AF457779.1| Schizothorax progastus haplotype SPR332-2f2 mitochondrial control region, partial sequence Length = 584 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 tttattatcacatacaagga 510 |||||||||||||||||||| Sbjct: 200 tttattatcacatacaagga 181
>gb|AF457778.1| Schizothorax progastus haplotype SPR332-1f2 mitochondrial control region, partial sequence Length = 580 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 tttattatcacatacaagga 510 |||||||||||||||||||| Sbjct: 200 tttattatcacatacaagga 181
>gb|AF457777.1| Schizothorax richardsonii haplotype SRI330-2f2 mitochondrial control region, partial sequence Length = 586 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 tttattatcacatacaagga 510 |||||||||||||||||||| Sbjct: 200 tttattatcacatacaagga 181
>gb|AF457776.1| Schizothorax richardsonii haplotype SRI330-1f2 mitochondrial control region, partial sequence Length = 586 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 tttattatcacatacaagga 510 |||||||||||||||||||| Sbjct: 200 tttattatcacatacaagga 181
>gb|AF457775.1| Schizothorax richardsonii haplotype SRI324-3f2 mitochondrial control region, partial sequence Length = 584 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 tttattatcacatacaagga 510 |||||||||||||||||||| Sbjct: 200 tttattatcacatacaagga 181
>gb|AF457774.1| Schizothorax richardsonii haplotype SRI324-2f2 mitochondrial control region, partial sequence Length = 584 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 tttattatcacatacaagga 510 |||||||||||||||||||| Sbjct: 200 tttattatcacatacaagga 181
>gb|AF457772.1| Schizothorax macrophthalmus haplotype SMA326-9f2 mitochondrial control region, partial sequence Length = 584 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 tttattatcacatacaagga 510 |||||||||||||||||||| Sbjct: 200 tttattatcacatacaagga 181
>gb|AF457771.1| Schizothorax macrophthalmus haplotype SMA326-8f2 mitochondrial control region, partial sequence Length = 586 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 tttattatcacatacaagga 510 |||||||||||||||||||| Sbjct: 200 tttattatcacatacaagga 181
>gb|AF457770.1| Schizothorax macrophthalmus haplotype SMA326-7f2 mitochondrial control region, partial sequence Length = 584 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 tttattatcacatacaagga 510 |||||||||||||||||||| Sbjct: 200 tttattatcacatacaagga 181
>gb|AF457769.1| Schizothorax macrophthalmus haplotype SMA326-5f2 mitochondrial control region, partial sequence Length = 580 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 tttattatcacatacaagga 510 |||||||||||||||||||| Sbjct: 200 tttattatcacatacaagga 181
>gb|AF457768.1| Schizothorax nepalensis haplotype SNE327-9f2 mitochondrial control region, partial sequence Length = 584 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 tttattatcacatacaagga 510 |||||||||||||||||||| Sbjct: 200 tttattatcacatacaagga 181
>gb|AF457767.1| Schizothorax nepalensis haplotype SNE327-8f2 mitochondrial control region, partial sequence Length = 584 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 tttattatcacatacaagga 510 |||||||||||||||||||| Sbjct: 200 tttattatcacatacaagga 181
>gb|AF457766.1| Schizothorax nepalensis haplotype SNE327-7f2 mitochondrial control region, partial sequence Length = 584 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 tttattatcacatacaagga 510 |||||||||||||||||||| Sbjct: 200 tttattatcacatacaagga 181
>gb|AF457765.1| Schizothorax nepalensis haplotype SNE327-6f2 mitochondrial control region, partial sequence Length = 584 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 tttattatcacatacaagga 510 |||||||||||||||||||| Sbjct: 200 tttattatcacatacaagga 181
>gb|AF457764.1| Schizothorax nepalensis haplotype SNE327-5f2 mitochondrial control region, partial sequence Length = 586 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 tttattatcacatacaagga 510 |||||||||||||||||||| Sbjct: 200 tttattatcacatacaagga 181
>gb|AF457763.1| Schizothorax nepalensis haplotype SNE327-4f2 mitochondrial control region, partial sequence Length = 584 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 tttattatcacatacaagga 510 |||||||||||||||||||| Sbjct: 200 tttattatcacatacaagga 181
>gb|AF457762.1| Schizothorax nepalensis haplotype SNE327-3f2 mitochondrial control region, partial sequence Length = 586 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 tttattatcacatacaagga 510 |||||||||||||||||||| Sbjct: 200 tttattatcacatacaagga 181
>gb|AF457761.1| Schizothorax nepalensis haplotype SNE327-1f2 mitochondrial control region, partial sequence Length = 584 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 tttattatcacatacaagga 510 |||||||||||||||||||| Sbjct: 200 tttattatcacatacaagga 181
>gb|AF457760.1| Schizothorax raraensis haplotype SrA325-8f2 mitochondrial control region, partial sequence Length = 584 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 tttattatcacatacaagga 510 |||||||||||||||||||| Sbjct: 200 tttattatcacatacaagga 181
>gb|AF457759.1| Schizothorax raraensis haplotype SRA325-7f2 mitochondrial control region, partial sequence Length = 582 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 tttattatcacatacaagga 510 |||||||||||||||||||| Sbjct: 200 tttattatcacatacaagga 181
>gb|AF457757.1| Schizothorax raraensis haplotype SRA325-4f2 mitochondrial control region, partial sequence Length = 584 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 tttattatcacatacaagga 510 |||||||||||||||||||| Sbjct: 200 tttattatcacatacaagga 181
>gb|AF457756.1| Schizothorax raraensis haplotype SRA325-3f2 mitochondrial control region, partial sequence Length = 584 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 tttattatcacatacaagga 510 |||||||||||||||||||| Sbjct: 200 tttattatcacatacaagga 181
>gb|AF457754.1| Schizothorax raraensis haplotype SRA326-13f2 mitochondrial control region, partial sequence Length = 582 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 tttattatcacatacaagga 510 |||||||||||||||||||| Sbjct: 200 tttattatcacatacaagga 181
>gb|AF457753.1| Schizothorax raraensis haplotype SRA326-12f2 mitochondrial control region, partial sequence Length = 584 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 tttattatcacatacaagga 510 |||||||||||||||||||| Sbjct: 200 tttattatcacatacaagga 181
>emb|CR450787.6| Zebrafish DNA sequence from clone CH211-222O17 in linkage group 12, complete sequence Length = 212974 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 384 aagaaaatcctgtttttacctttg 407 ||||||||| |||||||||||||| Sbjct: 113029 aagaaaatcttgtttttacctttg 113052
>gb|AC002382.1| Homo sapiens BAC clone CTB-22J17 from 7, complete sequence Length = 125590 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 gaaaatcctgtttttacctttgtg 409 |||||||||||||||| ||||||| Sbjct: 29814 gaaaatcctgtttttatctttgtg 29791
>emb|BX294138.1| Pirellula sp. strain 1 complete genome; segment 6/24 Length = 321950 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 cagtccggccaatcccatcc 322 |||||||||||||||||||| Sbjct: 33863 cagtccggccaatcccatcc 33882
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 cggccacggcccgagcggcg 146 |||||||||||||||||||| Sbjct: 1553144 cggccacggcccgagcggcg 1553163
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 508 ggagtgcctgtttgtttgcgattc 531 ||||||||||||||| |||||||| Sbjct: 1795696 ggagtgcctgtttgtctgcgattc 1795673
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 tcgccatggtcggcatcttc 244 |||||||||||||||||||| Sbjct: 2428516 tcgccatggtcggcatcttc 2428497
>gb|AF087022.1|AF087022 Streptomyces venezuelae cytochrome P450 monooxygenase (picK) gene, complete cds Length = 1470 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 cccgcccaggcccagaccgc 43 |||||||||||||||||||| Sbjct: 671 cccgcccaggcccagaccgc 690
>gb|AC161386.4| Pan troglodytes BAC clone CH251-497P4 from chromosome 7, complete sequence Length = 193048 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 386 gaaaatcctgtttttacctttgtg 409 |||||||||||||||| ||||||| Sbjct: 187992 gaaaatcctgtttttatctttgtg 188015
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 109 gatgggcggcgaccatggcggcca 132 ||||||||||||||| |||||||| Sbjct: 3664609 gatgggcggcgaccagggcggcca 3664632
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 gggcggcgaccatggcggcc 131 |||||||||||||||||||| Sbjct: 19434487 gggcggcgaccatggcggcc 19434506
>dbj|AP003449.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0086A10 Length = 151071 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 gggcggcgaccatggcggcc 131 |||||||||||||||||||| Sbjct: 43303 gggcggcgaccatggcggcc 43322
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 gcggcggcgacttccggcag 160 |||||||||||||||||||| Sbjct: 350878 gcggcggcgacttccggcag 350897
>gb|AC128714.15| Homo sapiens 3 BAC RP11-433C9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 109972 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 396 tttttacctttgtgccttcttttg 419 |||||||||||||||||| ||||| Sbjct: 47521 tttttacctttgtgcctttttttg 47544
>dbj|AP005572.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1506_A04 Length = 114998 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 acggcccgagcggcggcgac 151 |||||||||||||||||||| Sbjct: 29072 acggcccgagcggcggcgac 29091
>gb|AY110731.1| Zea mays CL6588_1 mRNA sequence Length = 874 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 314 atcccatcccagctttggtgcaag 337 ||||||||||| |||||||||||| Sbjct: 252 atcccatcccatctttggtgcaag 229
>emb|AL136298.5|CNS01DW2 Human chromosome 14 DNA sequence BAC R-134E15 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 181532 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 398 tttacctttgtgccttcttttgtcataa 425 |||||||| ||||||||||||| ||||| Sbjct: 115196 tttaccttggtgccttcttttgccataa 115169
>gb|AE015927.1| Clostridium tetani E88, complete genome Length = 2799251 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 aactttggcaagaaggaata 357 |||||||||||||||||||| Sbjct: 1517226 aactttggcaagaaggaata 1517245
>gb|AF079139.1|AF079139 Streptomyces venezuelae pikCD operon, complete sequence Length = 4342 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 cccgcccaggcccagaccgc 43 |||||||||||||||||||| Sbjct: 671 cccgcccaggcccagaccgc 690
>dbj|AP003972.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-861E23, complete sequence Length = 181946 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 gtctgcatccccatcgccat 267 |||||||||||||||||||| Sbjct: 62029 gtctgcatccccatcgccat 62048 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,320,718 Number of Sequences: 3902068 Number of extensions: 4320718 Number of successful extensions: 93622 Number of sequences better than 10.0: 80 Number of HSP's better than 10.0 without gapping: 81 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 92463 Number of HSP's gapped (non-prelim): 1159 length of query: 558 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 535 effective length of database: 17,143,297,704 effective search space: 9171664271640 effective search space used: 9171664271640 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
