ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal28p24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LAMC1_HUMAN (P11047) Laminin gamma-1 chain precursor (Laminin B2... 31 0.76
2LAMC1_MOUSE (P02468) Laminin gamma-1 chain precursor (Laminin B2... 31 1.00
3LAMB1_HUMAN (P07942) Laminin beta-1 chain precursor (Laminin B1 ... 30 2.2
4R1AB_CVHSA (P59641) Replicase polyprotein 1ab (pp1ab) (ORF1AB) [... 28 8.4

>LAMC1_HUMAN (P11047) Laminin gamma-1 chain precursor (Laminin B2 chain)|
          Length = 1609

 Score = 31.2 bits (69), Expect = 0.76
 Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 5/57 (8%)
 Frame = +3

Query: 9    EACRPLKCHAMLSLPTNCNSVASLYLYKSAVGS-----DRQNLYLSHWPICYPCSLC 164
            E C+P  CH   SL   C         +  VG+     +    Y   WP C  C  C
Sbjct: 978  EGCKPCDCHPEGSLSLQCKDDGRCECREGFVGNRCDQCEENYFYNRSWPGCQECPAC 1034



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>LAMC1_MOUSE (P02468) Laminin gamma-1 chain precursor (Laminin B2 chain)|
          Length = 1607

 Score = 30.8 bits (68), Expect = 1.00
 Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 5/57 (8%)
 Frame = +3

Query: 9    EACRPLKCHAMLSLPTNCNSVASLYLYKSAVGS-----DRQNLYLSHWPICYPCSLC 164
            E C+P  CH   SL   C         +  VG+     +    Y   WP C  C  C
Sbjct: 976  EGCKPCDCHHEGSLSLQCKDDGRCECREGFVGNRCDQCEENYFYNRSWPGCQECPAC 1032



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>LAMB1_HUMAN (P07942) Laminin beta-1 chain precursor (Laminin B1 chain)|
          Length = 1786

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
 Frame = +3

Query: 15  CRPLKCHAMLSLPTNCNSV-ASLYLYKSAVGSDRQNLYLSHW--PICYPC 155
           C+P +CH   S+   CN V    + ++             HW  P C PC
Sbjct: 818 CKPCECHLQGSVNAFCNPVTGQCHCFQGVYARQCDRCLPGHWGFPSCQPC 867



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>R1AB_CVHSA (P59641) Replicase polyprotein 1ab (pp1ab) (ORF1AB) [Includes:|
            Replicase polyprotein 1a (pp1a) (ORF1A)] [Contains:
            Leader protein; p65 homolog; NSP1 (EC 3.4.22.-)
            (Papain-like proteinase) (PL-PRO); 3C-like proteinase (EC
            3.4.22.-) (3CL-PRO) (3
          Length = 7073

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +3

Query: 51   PTNCNSVASLYLYKSAVGSDRQNLYLSHWPICYPCSLCLS 170
            P+ CN V  LYL  S V +      +      +PCS+CLS
Sbjct: 2237 PSYCNGVRELYLNSSNVTT------MDFCEGSFPCSICLS 2270


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,655,680
Number of Sequences: 219361
Number of extensions: 481560
Number of successful extensions: 1125
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 80,573,946
effective HSP length: 48
effective length of database: 70,044,618
effective search space used: 1681070832
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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