| Clone Name | baal28p16 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_478909.1| Oryza sativa (japonica cultivar-group), mRNA Length = 826 Score = 303 bits (153), Expect = 3e-79 Identities = 228/253 (90%) Strand = Plus / Plus Query: 248 tgctgttcgtggagtacctcccggggcccaaggtgttcaagtgcaagttctgcagggttg 307 ||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| | Sbjct: 346 tgctgttcgtggagtcgctcccggggccgaaggtgttcaagtgcaagttctgcggggtgg 405 Query: 308 actcggcgtcgccggacgacattgtgtccaaggagttccgtggccgccacggccgcgcct 367 |||||||||||||||||| ||| ||||||||||||||||| |||||||| ||||| |||| Sbjct: 406 actcggcgtcgccggacgccatcgtgtccaaggagttccgcggccgccatggccgggcct 465 Query: 368 acctcttcgatagcgtggtgaatgtgagccttggtcctaatgaggatcgccatctcttga 427 | |||||||| ||||||||||| |||||||||||||| | |||||||||| |||| ||| Sbjct: 466 atctcttcgacagcgtggtgaacgtgagccttggtcccagggaggatcgccttctcatga 525 Query: 428 ctggattgcatacagtgaacgatatctactgtagctgctgccaacgactccttggctgga 487 |||||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 526 ctggattgcacacagtgaatgatatctattgtagctgctgccaacgactccttggttgga 585 Query: 488 aatatgcgaaagc 500 ||| | |||||| Sbjct: 586 gatacgagaaagc 598
>dbj|AK073870.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033072I01, full insert sequence Length = 826 Score = 303 bits (153), Expect = 3e-79 Identities = 228/253 (90%) Strand = Plus / Plus Query: 248 tgctgttcgtggagtacctcccggggcccaaggtgttcaagtgcaagttctgcagggttg 307 ||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| | Sbjct: 346 tgctgttcgtggagtcgctcccggggccgaaggtgttcaagtgcaagttctgcggggtgg 405 Query: 308 actcggcgtcgccggacgacattgtgtccaaggagttccgtggccgccacggccgcgcct 367 |||||||||||||||||| ||| ||||||||||||||||| |||||||| ||||| |||| Sbjct: 406 actcggcgtcgccggacgccatcgtgtccaaggagttccgcggccgccatggccgggcct 465 Query: 368 acctcttcgatagcgtggtgaatgtgagccttggtcctaatgaggatcgccatctcttga 427 | |||||||| ||||||||||| |||||||||||||| | |||||||||| |||| ||| Sbjct: 466 atctcttcgacagcgtggtgaacgtgagccttggtcccagggaggatcgccttctcatga 525 Query: 428 ctggattgcatacagtgaacgatatctactgtagctgctgccaacgactccttggctgga 487 |||||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 526 ctggattgcacacagtgaatgatatctattgtagctgctgccaacgactccttggttgga 585 Query: 488 aatatgcgaaagc 500 ||| | |||||| Sbjct: 586 gatacgagaaagc 598
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 176 bits (89), Expect = 5e-41 Identities = 125/137 (91%) Strand = Plus / Plus Query: 248 tgctgttcgtggagtacctcccggggcccaaggtgttcaagtgcaagttctgcagggttg 307 ||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| | Sbjct: 23619822 tgctgttcgtggagtcgctcccggggccgaaggtgttcaagtgcaagttctgcggggtgg 23619881 Query: 308 actcggcgtcgccggacgacattgtgtccaaggagttccgtggccgccacggccgcgcct 367 |||||||||||||||||| ||| ||||||||||||||||| |||||||| ||||| |||| Sbjct: 23619882 actcggcgtcgccggacgccatcgtgtccaaggagttccgcggccgccatggccgggcct 23619941 Query: 368 acctcttcgatagcgtg 384 | |||||||| |||||| Sbjct: 23619942 atctcttcgacagcgtg 23619958 Score = 127 bits (64), Expect = 4e-26 Identities = 94/104 (90%) Strand = Plus / Plus Query: 384 ggtgaatgtgagccttggtcctaatgaggatcgccatctcttgactggattgcatacagt 443 |||||| |||||||||||||| | |||||||||| |||| ||||||||||||| ||||| Sbjct: 23621080 ggtgaacgtgagccttggtcccagggaggatcgccttctcatgactggattgcacacagt 23621139 Query: 444 gaacgatatctactgtagctgctgccaacgactccttggctgga 487 ||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 23621140 gaatgatatctattgtagctgctgccaacgactccttggttgga 23621183
>dbj|AP003747.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1127_E01 Length = 123787 Score = 176 bits (89), Expect = 5e-41 Identities = 125/137 (91%) Strand = Plus / Plus Query: 248 tgctgttcgtggagtacctcccggggcccaaggtgttcaagtgcaagttctgcagggttg 307 ||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| | Sbjct: 72263 tgctgttcgtggagtcgctcccggggccgaaggtgttcaagtgcaagttctgcggggtgg 72322 Query: 308 actcggcgtcgccggacgacattgtgtccaaggagttccgtggccgccacggccgcgcct 367 |||||||||||||||||| ||| ||||||||||||||||| |||||||| ||||| |||| Sbjct: 72323 actcggcgtcgccggacgccatcgtgtccaaggagttccgcggccgccatggccgggcct 72382 Query: 368 acctcttcgatagcgtg 384 | |||||||| |||||| Sbjct: 72383 atctcttcgacagcgtg 72399 Score = 127 bits (64), Expect = 4e-26 Identities = 94/104 (90%) Strand = Plus / Plus Query: 384 ggtgaatgtgagccttggtcctaatgaggatcgccatctcttgactggattgcatacagt 443 |||||| |||||||||||||| | |||||||||| |||| ||||||||||||| ||||| Sbjct: 73521 ggtgaacgtgagccttggtcccagggaggatcgccttctcatgactggattgcacacagt 73580 Query: 444 gaacgatatctactgtagctgctgccaacgactccttggctgga 487 ||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 73581 gaatgatatctattgtagctgctgccaacgactccttggttgga 73624
>dbj|AK068081.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013131A19, full insert sequence Length = 2159 Score = 127 bits (64), Expect = 4e-26 Identities = 94/104 (90%) Strand = Plus / Plus Query: 384 ggtgaatgtgagccttggtcctaatgaggatcgccatctcttgactggattgcatacagt 443 |||||| |||||||||||||| | |||||||||| |||| ||||||||||||| ||||| Sbjct: 1798 ggtgaacgtgagccttggtcccagggaggatcgccttctcatgactggattgcacacagt 1857 Query: 444 gaacgatatctactgtagctgctgccaacgactccttggctgga 487 ||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 1858 gaatgatatctattgtagctgctgccaacgactccttggttgga 1901
>ref|NM_196100.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OJ1003C07.11), mRNA Length = 360 Score = 81.8 bits (41), Expect = 2e-12 Identities = 121/145 (83%), Gaps = 2/145 (1%) Strand = Plus / Plus Query: 357 cggccgcgcctacctcttcgatagcgtggtgaatgtgagcctt-ggtcctaatgaggatc 415 ||||||||||||||||||||| |||||||||| | | |||| || ||||||||||||| Sbjct: 141 cggccgcgcctacctcttcgaccacgtggtgaatat-atccttagggcctaatgaggatc 199 Query: 416 gccatctcttgactggattgcatacagtgaacgatatctactgtagctgctgccaacgac 475 | |||| |||| ||| ||||||| ||||| ||||||||||||||||| ||||| | | Sbjct: 200 ggtatctgatgaccggactgcatacggtgaaagatatctactgtagctgttgccagcaaa 259 Query: 476 tccttggctggaaatatgcgaaagc 500 | || ||||||| ||||| |||||| Sbjct: 260 ttctcggctggagatatgagaaagc 284
>gb|AY111231.1| Zea mays CL19652_1 mRNA sequence Length = 619 Score = 71.9 bits (36), Expect = 2e-09 Identities = 120/148 (81%) Strand = Plus / Minus Query: 357 cggccgcgcctacctcttcgatagcgtggtgaatgtgagccttggtcctaatgaggatcg 416 ||||||||||||||||||||| ||| ||||| | |||| || |||||||||||||| Sbjct: 463 cggccgcgcctacctcttcgaccacgttgtgaacatatgcctaggccctaatgaggatcg 404 Query: 417 ccatctcttgactggattgcatacagtgaacgatatctactgtagctgctgccaacgact 476 |||| | || || | ||||| ||||| || |||||||||||||||||||||| | Sbjct: 403 atatcttgtaaccgggctccatactgtgaatgacatctactgtagctgctgccaacagat 344 Query: 477 ccttggctggaaatatgcgaaagcctac 504 |||||||||| ||||| |||||||||| Sbjct: 343 tcttggctggagatatgagaaagcctac 316
>gb|AC113335.1| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OJ1003C07, from chromosome 10, complete sequence Length = 115188 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 403 cctaatgaggatcgccatctcttgactggattgcatacagtgaacgatatctactgtagc 462 |||||||||||||| |||| |||| ||| ||||||| ||||| ||||||||||||||| Sbjct: 76111 cctaatgaggatcggtatctgatgaccggactgcatacggtgaaagatatctactgtagc 76170 Query: 463 tgctgcca 470 || ||||| Sbjct: 76171 tgttgcca 76178 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 357 cggccgcgcctacctcttcga 377 ||||||||||||||||||||| Sbjct: 75166 cggccgcgcctacctcttcga 75186
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 403 cctaatgaggatcgccatctcttgactggattgcatacagtgaacgatatctactgtagc 462 |||||||||||||| |||| |||| ||| ||||||| ||||| ||||||||||||||| Sbjct: 11082946 cctaatgaggatcggtatctgatgaccggactgcatacggtgaaagatatctactgtagc 11082887 Query: 463 tgctgcca 470 || ||||| Sbjct: 11082886 tgttgcca 11082879 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 357 cggccgcgcctacctcttcga 377 ||||||||||||||||||||| Sbjct: 11083891 cggccgcgcctacctcttcga 11083871
>dbj|AK071370.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023094J07, full insert sequence Length = 3310 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 403 cctaatgaggatcgccatctcttgactggattgcatacagtgaacgatatctactgtagc 462 |||||||||||||| |||| |||| ||| ||||||| ||||| ||||||||||||||| Sbjct: 1204 cctaatgaggatcggtatctgatgaccggactgcatacggtgaaagatatctactgtagc 1263 Query: 463 tgctgcca 470 || ||||| Sbjct: 1264 tgttgcca 1271 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 357 cggccgcgcctacctcttcga 377 ||||||||||||||||||||| Sbjct: 259 cggccgcgcctacctcttcga 279
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 403 cctaatgaggatcgccatctcttgactggattgcatacagtgaacgatatctactgtagc 462 |||||||||||||| |||| |||| ||| ||||||| ||||| ||||||||||||||| Sbjct: 11089386 cctaatgaggatcggtatctgatgaccggactgcatacggtgaaagatatctactgtagc 11089327 Query: 463 tgctgcca 470 || ||||| Sbjct: 11089326 tgttgcca 11089319 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 357 cggccgcgcctacctcttcga 377 ||||||||||||||||||||| Sbjct: 11090331 cggccgcgcctacctcttcga 11090311
>gb|AC150751.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNOa0279P04, complete sequence Length = 32479 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 427 actggattgcatacagtgaacgatatctactgtagctgctgccaac 472 |||||| |||| || ||||| || |||||||||||||||||||||| Sbjct: 21452 actggactgcacacggtgaatgacatctactgtagctgctgccaac 21497 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 334 tccaaggagttccgtggccgccacggccgcgcctacctcttcgat 378 ||||||||||||| ||| || |||||||||||||||||||||| Sbjct: 20617 tccaaggagttccagggcagctccggccgcgcctacctcttcgat 20661
>gb|AY616047.1| Prototheca wickerhamii Tic22-like protein-like mRNA, partial sequence Length = 697 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 217 gctctccgggccgggggaggcg 238 |||||||||||||||||||||| Sbjct: 552 gctctccgggccgggggaggcg 531
>gb|AC154901.1| Prunus persica (peach) BAC clone 82I18, complete sequence Length = 73299 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 ggattgcatacagtgaacga 449 |||||||||||||||||||| Sbjct: 69474 ggattgcatacagtgaacga 69493
>gb|AC150517.3| Bos taurus BAC CH240-161G19 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 180767 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 cttctgctgaattgctctcc 223 |||||||||||||||||||| Sbjct: 53651 cttctgctgaattgctctcc 53632
>ref|XM_676610.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN8433.2), mRNA Length = 2313 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 gttgactcggcgtcgccgga 323 |||||||||||||||||||| Sbjct: 1609 gttgactcggcgtcgccgga 1628
>ref|XM_742016.1| Aspergillus fumigatus Af293 hypothetical protein (Afu8g00970) partial mRNA Length = 747 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 atggcgatcgggcccggcag 73 |||||||||||||||||||| Sbjct: 577 atggcgatcgggcccggcag 596
>gb|AC007861.5| Homo sapiens chromosome 16 clone RP11-189E14, complete sequence Length = 175861 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 cctctccgcctccccgcagc 147 |||||||||||||||||||| Sbjct: 75595 cctctccgcctccccgcagc 75614
>gb|AC084026.14| Homo sapiens chromosome 8, clone RP11-486M23, complete sequence Length = 185759 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 caagtgcaagttctgcaggg 304 |||||||||||||||||||| Sbjct: 60209 caagtgcaagttctgcaggg 60228
>emb|BX908798.1| Parachlamydia-related symbiont UWE25, complete genome Length = 2414465 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 gaatttgataaggctttaga 125 |||||||||||||||||||| Sbjct: 1498563 gaatttgataaggctttaga 1498582
>emb|BX294154.1| Pirellula sp. strain 1 complete genome; segment 22/24 Length = 299050 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 149 cgtcctgctcgattgctgatttgg 172 ||||||||||||||||||| |||| Sbjct: 245974 cgtcctgctcgattgctgaattgg 245997
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 352 cgccacggccgcgcctacctcttc 375 |||||||||||||||||| ||||| Sbjct: 1252089 cgccacggccgcgcctacttcttc 1252066
>emb|AJ334962.1|HSA334962 Homo sapiens genomic sequence surrounding NotI site, clone NB1-847C Length = 1052 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 ccgcggctgccgcttctgct 211 |||||||||||||||||||| Sbjct: 240 ccgcggctgccgcttctgct 221
>gb|AE017226.1| Treponema denticola ATCC 35405, complete genome Length = 2843201 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 tcggaatttgataaggcttt 122 |||||||||||||||||||| Sbjct: 2788136 tcggaatttgataaggcttt 2788117 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,300,707 Number of Sequences: 3902068 Number of extensions: 3300707 Number of successful extensions: 68370 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68056 Number of HSP's gapped (non-prelim): 313 length of query: 514 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 491 effective length of database: 17,143,297,704 effective search space: 8417359172664 effective search space used: 8417359172664 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)