ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baal29e02 |
|---|---|
| Clone Library Name | barley_pub |
>UFD1_DROME (Q9VTF9) Ubiquitin fusion degradation protein 1 homolog (UB fusion| protein 1) Length = 316 Score = 181 bits (460), Expect = 1e-45 Identities = 86/165 (52%), Positives = 114/165 (69%), Gaps = 3/165 (1%) Frame = +2 Query: 119 FLSMNMYFEGYGYRGSTFEQTYRCYPASFI---DKPQLESGDKIIMPPSALDRLASLHIE 289 F NM F G F Y+C+ S + ++ +E G KIIMPPSALD L L++E Sbjct: 4 FSGFNMMFP----EGRNFHANYKCFSVSMLPGNERTDVEKGGKIIMPPSALDTLTRLNVE 59 Query: 290 YPMLFEVRNTGAERTSHCGVLEFIAEEGMIYMPYWMMQNLLLQEGDMVFIKNANLPKGTY 469 YPMLF++ N R+SH GVLEF+A+EG Y+P+WMM+NLLL EGD++ I++ +LP T+ Sbjct: 60 YPMLFKLTNVKKSRSSHAGVLEFVADEGKCYLPHWMMENLLLGEGDILNIESVSLPVATF 119 Query: 470 VKLQPHTTDFLDISNPKAILEKTLRNYSCLTTGDSIMVAYNNKKY 604 K QPH+TDFLDI+NPKA+LE LRN++CLT GD I + YN K Y Sbjct: 120 SKFQPHSTDFLDITNPKAVLENALRNFACLTRGDVIAIKYNKKVY 164
>UFD1_MOUSE (P70362) Ubiquitin fusion degradation protein 1 homolog (UB fusion| protein 1) Length = 307 Score = 181 bits (458), Expect = 2e-45 Identities = 82/153 (53%), Positives = 113/153 (73%), Gaps = 4/153 (2%) Frame = +2 Query: 170 FEQTYRCYPASFI----DKPQLESGDKIIMPPSALDRLASLHIEYPMLFEVRNTGAERTS 337 F YRC+ S + D+ +E G KIIMPPSALD+L+ L+I YPMLF++ N ++R + Sbjct: 19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMT 78 Query: 338 HCGVLEFIAEEGMIYMPYWMMQNLLLQEGDMVFIKNANLPKGTYVKLQPHTTDFLDISNP 517 HCGVLEF+A+EG+ Y+P+WMMQNLLL+EG +V +++ NL TY K QP + DFLDI+NP Sbjct: 79 HCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNP 138 Query: 518 KAILEKTLRNYSCLTTGDSIMVAYNNKKYYIDI 616 KA+LE LRN++C+TTGD I + YN K Y + + Sbjct: 139 KAVLENALRNFACMTTGDVIAINYNEKIYELRV 171
>UFD1_SCHPO (O42915) Ubiquitin fusion degradation protein 1 (UB fusion protein| 1) Length = 342 Score = 164 bits (416), Expect = 1e-40 Identities = 74/152 (48%), Positives = 109/152 (71%), Gaps = 3/152 (1%) Frame = +2 Query: 170 FEQTYRCYPASFI---DKPQLESGDKIIMPPSALDRLASLHIEYPMLFEVRNTGAERTSH 340 F+ YRCYP + I ++P + G K+I+PPSAL++L+ L++ YPMLF+ N AE+ +H Sbjct: 32 FDTRYRCYPVAMIPGEERPNVNYGGKVILPPSALEKLSRLNVSYPMLFDFENEAAEKKTH 91 Query: 341 CGVLEFIAEEGMIYMPYWMMQNLLLQEGDMVFIKNANLPKGTYVKLQPHTTDFLDISNPK 520 GVLEFIAEEG +Y+PYWMM L L+ GD+V + N ++ +G+YVKLQP + +FLDI++ + Sbjct: 92 GGVLEFIAEEGRVYLPYWMMTTLSLEPGDLVRVINTDIAQGSYVKLQPQSVNFLDITDHR 151 Query: 521 AILEKTLRNYSCLTTGDSIMVAYNNKKYYIDI 616 A+LE LRN+S LT D + YN++ Y I + Sbjct: 152 AVLENALRNFSTLTKSDIFEILYNDQVYQIKV 183
>UFD1_HUMAN (Q92890) Ubiquitin fusion degradation protein 1 homolog (UB fusion| protein 1) Length = 343 Score = 163 bits (413), Expect = 3e-40 Identities = 83/189 (43%), Positives = 113/189 (59%), Gaps = 40/189 (21%) Frame = +2 Query: 170 FEQTYRCYPASFI----DKPQLESGDKIIMPPSALDRLASLHIEYPMLFEVRNTGAERTS 337 F YRC+ S + D+ +E G KIIMPPSALD+L+ L+I YPMLF++ N ++R + Sbjct: 19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMT 78 Query: 338 HCGVLEFIAEEGMIYMPYWM------------------------------------MQNL 409 HCGVLEF+A+EG+ Y+P+WM MQNL Sbjct: 79 HCGVLEFVADEGICYLPHWMMQNLLLEEDGLVQLETVNLQVATYSKSKFCYLPHWMMQNL 138 Query: 410 LLQEGDMVFIKNANLPKGTYVKLQPHTTDFLDISNPKAILEKTLRNYSCLTTGDSIMVAY 589 LL+EG +V +++ NL TY K QP + DFLDI+NPKA+LE LRN++CLTTGD I + Y Sbjct: 139 LLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINY 198 Query: 590 NNKKYYIDI 616 N K Y + + Sbjct: 199 NEKIYELRV 207
>UFD1_YEAST (P53044) Ubiquitin fusion degradation protein 1 (UB fusion protein| 1) (Polymerase-interacting protein 3) Length = 361 Score = 156 bits (395), Expect = 4e-38 Identities = 76/161 (47%), Positives = 107/161 (66%), Gaps = 4/161 (2%) Frame = +2 Query: 146 GYGYRGSTFEQTYRCYPASFID----KPQLESGDKIIMPPSALDRLASLHIEYPMLFEVR 313 G+ TFE+ +RCYP + ++ K G KI +PPSAL +L+ L+I YPMLF++ Sbjct: 13 GFVNMPQTFEEFFRCYPIAMMNDRIRKDDANFGGKIFLPPSALSKLSMLNIRYPMLFKLT 72 Query: 314 NTGAERTSHCGVLEFIAEEGMIYMPYWMMQNLLLQEGDMVFIKNANLPKGTYVKLQPHTT 493 R +H GVLEFIAEEG +Y+P WMM+ L +Q G ++ I + ++P G +VKL+P + Sbjct: 73 ANETGRVTHGGVLEFIAEEGRVYLPQWMMETLGIQPGSLLQISSTDVPLGQFVKLEPQSV 132 Query: 494 DFLDISNPKAILEKTLRNYSCLTTGDSIMVAYNNKKYYIDI 616 DFLDIS+PKA+LE LRN+S LT D I ++YN K + I I Sbjct: 133 DFLDISDPKAVLENVLRNFSTLTVDDVIEISYNGKTFKIKI 173
>UFD1_CAEEL (Q19584) Ubiquitin fusion degradation protein 1 homolog (UB fusion| protein 1) Length = 342 Score = 135 bits (341), Expect = 7e-32 Identities = 71/169 (42%), Positives = 102/169 (60%), Gaps = 6/169 (3%) Frame = +2 Query: 101 VQKGLTFLSMNMYFEGYGYRGSTFEQTYRCYPASFIDKP------QLESGDKIIMPPSAL 262 +Q+GL + M G R ++QT+ Y F+ ++ G KI++P SAL Sbjct: 5 IQQGLHGMQM-------GGRVGNYDQTFVVYGPVFLPNATQSKISEINYGGKILLPSSAL 57 Query: 263 DRLASLHIEYPMLFEVRNTGAERTSHCGVLEFIAEEGMIYMPYWMMQNLLLQEGDMVFIK 442 + L +I PMLF++ N +R +HCGVLEF A EG +P WMMQ L L +GD + I+ Sbjct: 58 NLLMQYNIPMPMLFKLTNMAVQRVTHCGVLEFSAPEGQAILPLWMMQQLGLDDGDTIRIE 117 Query: 443 NANLPKGTYVKLQPHTTDFLDISNPKAILEKTLRNYSCLTTGDSIMVAY 589 +A LPK T+ KL+P + +FL+I+NPKA+LE LR Y+CLT D I +Y Sbjct: 118 SATLPKATFAKLKPMSLEFLNITNPKAVLEVELRKYACLTKNDRIPTSY 166
>Y286_BUCAP (Q8K9N7) Hypothetical protein BUsg286| Length = 413 Score = 30.8 bits (68), Expect = 3.3 Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 7/83 (8%) Frame = +2 Query: 386 PYWMMQNLLLQEGDMVFIKNANLPKGTYVK----LQPHTTDF---LDISNPKAILEKTLR 544 PY +M ++LL+ M FI + Y+K Q +F I N + I+ L Sbjct: 95 PYVLMNSVLLKNDKMRFINIKSFKNIKYIKKYFSFQKKLYNFSKLKKIYNNEIIISSDLA 154 Query: 545 NYSCLTTGDSIMVAYNNKKYYID 613 Y L GD I + NKK D Sbjct: 155 KYFSLKEGDCINLIILNKKISFD 177
>LICR_BACSU (P46321) Probable licABCH operon regulator [Includes: Putative| phosphotransferase enzyme IIB component (EC 2.7.1.69) (Putative PTS system EIIB component); Putative phosphotransferase enzyme IIA component (EC 2.7.1.-) (Putative PTS system EIIA Length = 641 Score = 29.6 bits (65), Expect = 7.4 Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 7/94 (7%) Frame = +2 Query: 353 EFIAEEGMIYMPY----WMMQNLLLQEGDMVFIKNANLPKGTYVKLQPHTTDFLDISN-- 514 EF ++G+ +P ++M+ LLL + ++K L + ++ TD ++ Sbjct: 79 EFQQKKGLPVLPEERMAYLMKRLLLADH---YLKLDELAEELFISKSTLQTDLKEVKKRL 135 Query: 515 -PKAILEKTLRNYSCLTTGDSIMVAYNNKKYYID 613 P I+ +T NY GD + + Y +Y +D Sbjct: 136 LPYRIVMETRPNYGFKLRGDEVQMRYCMAEYIVD 169
>ORC2_DROME (Q24168) Origin recognition complex subunit 2 (DmORC2)| Length = 618 Score = 29.6 bits (65), Expect = 7.4 Identities = 19/66 (28%), Positives = 28/66 (42%) Frame = +2 Query: 227 SGDKIIMPPSALDRLASLHIEYPMLFEVRNTGAERTSHCGVLEFIAEEGMIYMPYWMMQN 406 + KI+ LDRL + + +F + + H G + I EE Y P WM Sbjct: 288 ASSKILTSDHTLDRLKNPRLAADRVFSLLSEIKTSAEHEGSINAIMEEYRSYFPKWM--- 344 Query: 407 LLLQEG 424 +L EG Sbjct: 345 CILNEG 350
>SYS_XYLFT (Q87BX8) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 426 Score = 29.3 bits (64), Expect = 9.7 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -2 Query: 572 CHQWLDKSSSAKFFPRSLWDLKCPRSQLYEAAASHMCPL 456 CH WLD S+AK L+ P ++L+ A A M L Sbjct: 146 CHGWLDAESAAKLSGARFTVLRGPIARLHRALAQCMLDL 184
>SYS_XYLFA (Q9PB58) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 426 Score = 29.3 bits (64), Expect = 9.7 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -2 Query: 572 CHQWLDKSSSAKFFPRSLWDLKCPRSQLYEAAASHMCPL 456 CH WLD S+AK L+ P ++L+ A A M L Sbjct: 146 CHGWLDAESAAKLSGARFTVLRGPIARLHRALAQCMLDL 184
>HIS8_MYCTU (P0A678) Histidinol-phosphate aminotransferase (EC 2.6.1.9)| (Imidazole acetol-phosphate transaminase) Length = 380 Score = 29.3 bits (64), Expect = 9.7 Identities = 18/58 (31%), Positives = 30/58 (51%) Frame = +2 Query: 425 DMVFIKNANLPKGTYVKLQPHTTDFLDISNPKAILEKTLRNYSCLTTGDSIMVAYNNK 598 D+VFI + N P G V L P LD++ AI+++ +S + S++ Y +K Sbjct: 167 DVVFIASPNNPSGQSVSL-PDLCKLLDVAPGIAIVDEAYGEFSSQPSAVSLVEEYPSK 223
>HIS8_MYCBO (P0A679) Histidinol-phosphate aminotransferase (EC 2.6.1.9)| (Imidazole acetol-phosphate transaminase) Length = 380 Score = 29.3 bits (64), Expect = 9.7 Identities = 18/58 (31%), Positives = 30/58 (51%) Frame = +2 Query: 425 DMVFIKNANLPKGTYVKLQPHTTDFLDISNPKAILEKTLRNYSCLTTGDSIMVAYNNK 598 D+VFI + N P G V L P LD++ AI+++ +S + S++ Y +K Sbjct: 167 DVVFIASPNNPSGQSVSL-PDLCKLLDVAPGIAIVDEAYGEFSSQPSAVSLVEEYPSK 223
>GPMI_MYCMO (Q6KHV9) 2,3-bisphosphoglycerate-independent phosphoglycerate| mutase (EC 5.4.2.1) (Phosphoglyceromutase) (BPG-independent PGAM) (iPGM) Length = 510 Score = 29.3 bits (64), Expect = 9.7 Identities = 13/36 (36%), Positives = 18/36 (50%) Frame = +2 Query: 440 KNANLPKGTYVKLQPHTTDFLDISNPKAILEKTLRN 547 KN L GT + P D+L I PK +L+ + N Sbjct: 469 KNLKLNSGTLANIAPTILDYLKIPKPKNMLDSLIMN 504 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,791,842 Number of Sequences: 219361 Number of extensions: 1770553 Number of successful extensions: 4179 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4095 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4177 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5596027262 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
