ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal29d19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ARTE_ARATH (Q9FYL3) Protein ARTEMIS, chloroplast precursor (Arab... 39 0.003
2PPF1_PEA (Q9FY06) Inner membrane protein PPF-1, chloroplast prec... 35 0.074
3ALB3_ARATH (Q8LBP4) Inner membrane protein ALBINO3, chloroplast ... 30 2.4

>ARTE_ARATH (Q9FYL3) Protein ARTEMIS, chloroplast precursor (Arabidopsis|
           thaliana envelope membrane integrase) (Ath4)
           (ALBINO3-like protein 1)
          Length = 1013

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 16/22 (72%), Positives = 20/22 (90%)
 Frame = +2

Query: 2   VLSSAQQVWXQKLGGAKNPVQE 67
           +LS+AQQVW QK GGAKNPV++
Sbjct: 843 ILSTAQQVWLQKYGGAKNPVEK 864



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>PPF1_PEA (Q9FY06) Inner membrane protein PPF-1, chloroplast precursor|
           (Post-floral-specific protein 1)
          Length = 442

 Score = 34.7 bits (78), Expect = 0.074
 Identities = 16/22 (72%), Positives = 18/22 (81%)
 Frame = +2

Query: 2   VLSSAQQVWXQKLGGAKNPVQE 67
           VLS+AQQVW +KLGGAK  V E
Sbjct: 321 VLSTAQQVWLRKLGGAKPAVNE 342



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>ALB3_ARATH (Q8LBP4) Inner membrane protein ALBINO3, chloroplast precursor|
          Length = 462

 Score = 29.6 bits (65), Expect = 2.4
 Identities = 14/22 (63%), Positives = 18/22 (81%)
 Frame = +2

Query: 2   VLSSAQQVWXQKLGGAKNPVQE 67
           VLS+AQQV+ +KLGGAK  + E
Sbjct: 343 VLSTAQQVYLRKLGGAKPNMDE 364


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,276,607
Number of Sequences: 219361
Number of extensions: 206029
Number of successful extensions: 415
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 80,573,946
effective HSP length: 25
effective length of database: 75,089,921
effective search space used: 1802158104
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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