Clone Information

BLAST Search Result

Clone Name	baal28o17
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	MYSM1_CHICK (Q5F3F2) Protein MYSM1 (Myb-like, SWIRM and MPN doma...	48	2e-05
2	MYSM1_HUMAN (Q5VVJ2) Protein MYSM1 (Myb-like, SWIRM and MPN doma...	46	7e-05
3	MYSM1_MOUSE (Q69Z66) Protein MYSM1 (Myb-like, SWIRM and MPN doma...	41	0.003
4	RCOR1_HUMAN (Q9UKL0) REST corepressor 1 (Protein CoREST)	40	0.004
5	RCOR1_MOUSE (Q8CFE3) REST corepressor 1 (Protein CoREST)	40	0.004
6	YMA9_CAEEL (P34454) Hypothetical protein F54F2.9	40	0.006
7	SMCL_ARATH (Q8VY05) Putative SWI/SNF-related matrix-associated a...	40	0.006
8	SMRC1_HUMAN (Q92922) SWI/SNF-related matrix-associated actin-dep...	39	0.008
9	SMRC1_MOUSE (P97496) SWI/SNF-related matrix-associated actin-dep...	39	0.008
10	RCOR2_XENLA (Q6NRZ0) REST corepressor 2	39	0.011
11	SMRC2_HUMAN (Q8TAQ2) SWI/SNF-related matrix-associated actin-dep...	38	0.018
12	SMRC2_MOUSE (Q6PDG5) SWI/SNF-related matrix-associated actin-dep...	38	0.018
13	RCOR1_XENLA (Q90WN5) REST corepressor 1 (Protein CoREST) (xCoREST)	38	0.024
14	RCOR2_RAT (Q5FWT8) REST corepressor 2	38	0.024
15	RCOR2_MOUSE (Q8C796) REST corepressor 2 (M-CoREST)	38	0.024
16	RCOR2_HUMAN (Q8IZ40) REST corepressor 2	38	0.024
17	YEPA_SCHPO (O14470) Putative chromatin regulator protein C23H3.10	35	0.20
18	MYBH_DICDI (P34127) Myb-like protein (Fragment)	34	0.26
19	RCOR3_HUMAN (Q9P2K3) REST corepressor 3	33	0.45
20	TCPB_MOUSE (P80314) T-complex protein 1 subunit beta (TCP-1-beta...	33	0.59
21	NCOR2_HUMAN (Q9Y618) Nuclear receptor corepressor 2 (N-CoR2) (Si...	33	0.77
22	RCOR2_BRARE (Q6P116) REST corepressor 2	33	0.77
23	NCOR2_MOUSE (Q9WU42) Nuclear receptor corepressor 2 (N-CoR2) (Si...	33	0.77
24	NCOR1_MOUSE (Q60974) Nuclear receptor corepressor 1 (N-CoR1) (N-...	32	1.0
25	NCOR1_HUMAN (O75376) Nuclear receptor corepressor 1 (N-CoR1) (N-...	32	1.0
26	RCOR_CAEEL (Q18919) REST corepressor spr-1 (CoREST) (Suppressor ...	32	1.0
27	ARR19_ARATH (Q9M9B9) Putative two-component response regulator A...	32	1.3
28	RSC8_YEAST (P43609) Chromatin structure remodeling complex prote...	32	1.7
29	TBF1_YEAST (Q02457) Protein TBF1 (TTAGGG repeat-binding factor 1...	31	2.2
30	MYBA_CHICK (P52550) Myb-related protein A (A-Myb)	31	2.9
31	SWI3_YEAST (P32591) Transcription regulatory protein SWI3 (SWI/S...	31	2.9
32	BAS1_YEAST (P22035) Myb-like DNA-binding protein BAS1	31	2.9
33	RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats pro...	30	3.8
34	RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats prote...	30	3.8
35	RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats pro...	30	3.8
36	DRL1_ARATH (P60838) Probable disease resistance protein At1g12280	30	3.8
37	ISW1_CAEEL (P41877) Chromatin remodelling complex ATPase chain i...	30	5.0
38	APRR2_ARATH (Q6LA43) Two-component response regulator-like APRR2...	30	5.0
39	YD3A_SCHPO (Q10274) Hypothetical protein C13G7.10 in chromosome I	29	8.5

>MYSM1_CHICK (Q5F3F2) Protein MYSM1 (Myb-like, SWIRM and MPN domain-containing|
           protein 1)
          Length = 832

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 23/80 (28%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
 Frame = +2

Query: 335 IKVRKPYTITKQRERWTEAEHKRFLEALKLYGRAWQRIEEHVGTKTAVQIRSHAQKFF-- 508
           + VR P        +WT  E + F + L  YGR W +I + +G++T +Q++S+A+++F  
Sbjct: 107 VMVRSPTKPGSYSLKWTSEEKELFEQGLVKYGRRWTKIAKLIGSRTVLQVKSYARQYFKN 166

Query: 509 ------TKLEKEAINNGTSP 550
                 ++ E+++ + GT P
Sbjct: 167 KAKNDGSEREEQSQHGGTLP 186

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>MYSM1_HUMAN (Q5VVJ2) Protein MYSM1 (Myb-like, SWIRM and MPN domain-containing|
           protein 1)
          Length = 828

 Score = 46.2 bits (108), Expect = 7e-05
 Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
 Frame = +2

Query: 335 IKVRKPYTITKQRERWTEAEHKRFLEALKLYGRAWQRIEEHVGTKTAVQIRSHAQKFFTK 514
           I V  P        +WT  E + F + L  +GR W +I + +G++T +Q++S+A+++F  
Sbjct: 106 IMVHSPTKPASYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKN 165

Query: 515 -----LEKEAINNGT 544
                L+KE  N  T
Sbjct: 166 KVKCGLDKETPNQKT 180

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>MYSM1_MOUSE (Q69Z66) Protein MYSM1 (Myb-like, SWIRM and MPN domain-containing|
           protein 1)
          Length = 819

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 23/88 (26%), Positives = 42/88 (47%)
 Frame = +2

Query: 311 NSSGEETVIKVRKPYTITKQRERWTEAEHKRFLEALKLYGRAWQRIEEHVGTKTAVQIRS 490
           NS  + +   V  P        +WT  E + F + L  +GR W +I   + ++T +Q++S
Sbjct: 95  NSLQKSSKAMVDSPAKPASHSVKWTVEEKELFEQGLAKFGRRWTKIATLLKSRTVLQVKS 154

Query: 491 HAQKFFTKLEKEAINNGTSPGQAHDIDI 574
           +A+++F    K  +   T P Q    D+
Sbjct: 155 YARQYFKNKVKWDVEKET-PTQKSSSDL 181

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>RCOR1_HUMAN (Q9UKL0) REST corepressor 1 (Protein CoREST)|
          Length = 482

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 18/49 (36%), Positives = 29/49 (59%)
 Frame = +2

Query: 344 RKPYTITKQRERWTEAEHKRFLEALKLYGRAWQRIEEHVGTKTAVQIRS 490
           R P  I K   RWT  E    ++A++ YGR +Q I + +G K+ VQ+++
Sbjct: 371 RLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKN 419

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>RCOR1_MOUSE (Q8CFE3) REST corepressor 1 (Protein CoREST)|
          Length = 477

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 18/49 (36%), Positives = 29/49 (59%)
 Frame = +2

Query: 344 RKPYTITKQRERWTEAEHKRFLEALKLYGRAWQRIEEHVGTKTAVQIRS 490
           R P  I K   RWT  E    ++A++ YGR +Q I + +G K+ VQ+++
Sbjct: 365 RLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKN 413

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>YMA9_CAEEL (P34454) Hypothetical protein F54F2.9|
          Length = 299

 Score = 39.7 bits (91), Expect = 0.006
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
 Frame = +2

Query: 365 KQRERWTEAEHKRFLEALKLYGRA----WQRIEEHVGTKTAVQIRSHAQKFFTKLEKEAI 532
           K  + W++AE K F  AL+ Y +     W+RI E +G+KT  Q+    ++    + K+  
Sbjct: 237 KSEDDWSQAEQKAFETALQKYPKGTDERWERISEEIGSKTKKQVMVRFKQLAEMIRKKKT 296

Query: 533 NN 538
           N+
Sbjct: 297 ND 298

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>SMCL_ARATH (Q8VY05) Putative SWI/SNF-related matrix-associated actin-dependent|
           regulator of chromatin subfamily C member (AtSwi3C)
          Length = 985

 Score = 39.7 bits (91), Expect = 0.006
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +2

Query: 377 RWTEAEHKRFLEALKLYGRAWQRIEEHVGTKTAVQIRSH 493
           +WT+ E    LEAL+++   W  I EHV TKT  Q   H
Sbjct: 366 KWTDQETLLLLEALEIFKENWNEIAEHVATKTKAQCMLH 404

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>SMRC1_HUMAN (Q92922) SWI/SNF-related matrix-associated actin-dependent|
           regulator of chromatin subfamily C member 1 (SWI/SNF
           complex 155 kDa subunit) (BRG1-associated factor 155)
          Length = 1105

 Score = 39.3 bits (90), Expect = 0.008
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
 Frame = +2

Query: 293 ELEMEINSSGEETVIKVRKPYTITKQR-----ERWTEAEHKRFLEALKLYGRAWQRIEEH 457
           E  +++ + G  T I  +K  T+ K +       WTE E    LEAL++Y   W ++ EH
Sbjct: 591 EKPVDLQNFGLRTDIYSKK--TLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEH 648

Query: 458 VGTKT 472
           VG++T
Sbjct: 649 VGSRT 653

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>SMRC1_MOUSE (P97496) SWI/SNF-related matrix-associated actin-dependent|
           regulator of chromatin subfamily C member 1 (SWI/SNF
           complex 155 kDa subunit) (BRG1-associated factor 155)
           (SWI3-related protein)
          Length = 1104

 Score = 39.3 bits (90), Expect = 0.008
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
 Frame = +2

Query: 293 ELEMEINSSGEETVIKVRKPYTITKQR-----ERWTEAEHKRFLEALKLYGRAWQRIEEH 457
           E  +++ + G  T I  +K  T+ K +       WTE E    LEAL++Y   W ++ EH
Sbjct: 590 EKPIDLQNFGLRTDIYSKK--TLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEH 647

Query: 458 VGTKT 472
           VG++T
Sbjct: 648 VGSRT 652

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>RCOR2_XENLA (Q6NRZ0) REST corepressor 2|
          Length = 503

 Score = 38.9 bits (89), Expect = 0.011
 Identities = 19/66 (28%), Positives = 35/66 (53%)
 Frame = +2

Query: 293 ELEMEINSSGEETVIKVRKPYTITKQRERWTEAEHKRFLEALKLYGRAWQRIEEHVGTKT 472
           ++   +  S E  + ++R P    K   RWT  E    ++A++ YG+ +Q I E +G KT
Sbjct: 303 QMNSSLKESLEGGISEMRPPELNIKLNARWTTDEQLLAVQAVRKYGKDFQAISEVLGNKT 362

Query: 473 AVQIRS 490
             Q+++
Sbjct: 363 PSQVKT 368

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>SMRC2_HUMAN (Q8TAQ2) SWI/SNF-related matrix-associated actin-dependent|
           regulator of chromatin subfamily C member 2 (SWI/SNF
           complex 170 kDa subunit) (BRG1-associated factor 170)
          Length = 1214

 Score = 38.1 bits (87), Expect = 0.018
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +2

Query: 380 WTEAEHKRFLEALKLYGRAWQRIEEHVGTKT 472
           WTE E    LEAL++Y   W ++ EHVG++T
Sbjct: 601 WTEQETLLLLEALEMYKDDWNKVSEHVGSRT 631

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>SMRC2_MOUSE (Q6PDG5) SWI/SNF-related matrix-associated actin-dependent|
           regulator of chromatin subfamily C member 2 (SWI/SNF
           complex 170 kDa subunit) (BRG1-associated factor 170)
          Length = 1213

 Score = 38.1 bits (87), Expect = 0.018
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +2

Query: 380 WTEAEHKRFLEALKLYGRAWQRIEEHVGTKT 472
           WTE E    LEAL++Y   W ++ EHVG++T
Sbjct: 601 WTEQETLLLLEALEMYKDDWNKVSEHVGSRT 631

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>RCOR1_XENLA (Q90WN5) REST corepressor 1 (Protein CoREST) (xCoREST)|
          Length = 431

 Score = 37.7 bits (86), Expect = 0.024
 Identities = 15/42 (35%), Positives = 27/42 (64%)
 Frame = +2

Query: 365 KQRERWTEAEHKRFLEALKLYGRAWQRIEEHVGTKTAVQIRS 490
           K   RWT  E    ++A+++YGR +Q I + +G K+ VQ+++
Sbjct: 327 KFNARWTTEEQLLAVQAIRMYGRDFQAISDVIGNKSVVQVKN 368

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>RCOR2_RAT (Q5FWT8) REST corepressor 2|
          Length = 523

 Score = 37.7 bits (86), Expect = 0.024
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +2

Query: 341 VRKPYTITKQRERWTEAEHKRFLEALKLYGRAWQRIEEHVGTKTAVQIRSHAQKFFTKLE 520
           +R P   TK   RWT  E    ++A++ YG+ +  I E +G KT  Q+++    +  +  
Sbjct: 319 LRPPEANTKFNSRWTTDEQLLAVQAIRRYGKDFGAIAEVIGNKTLTQVKTFFVSYRRRFN 378

Query: 521 KEAI 532
            E +
Sbjct: 379 LEEV 382

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>RCOR2_MOUSE (Q8C796) REST corepressor 2 (M-CoREST)|
          Length = 523

 Score = 37.7 bits (86), Expect = 0.024
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +2

Query: 341 VRKPYTITKQRERWTEAEHKRFLEALKLYGRAWQRIEEHVGTKTAVQIRSHAQKFFTKLE 520
           +R P   TK   RWT  E    ++A++ YG+ +  I E +G KT  Q+++    +  +  
Sbjct: 319 LRPPEANTKFNSRWTTDEQLLAVQAIRRYGKDFGAIAEVIGNKTLTQVKTFFVSYRRRFN 378

Query: 521 KEAI 532
            E +
Sbjct: 379 LEEV 382

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>RCOR2_HUMAN (Q8IZ40) REST corepressor 2|
          Length = 523

 Score = 37.7 bits (86), Expect = 0.024
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +2

Query: 341 VRKPYTITKQRERWTEAEHKRFLEALKLYGRAWQRIEEHVGTKTAVQIRSHAQKFFTKLE 520
           +R P   TK   RWT  E    ++A++ YG+ +  I E +G KT  Q+++    +  +  
Sbjct: 319 LRPPEANTKFNSRWTTDEQLLAVQAIRRYGKDFGAIAEVIGNKTLTQVKTFFVSYRRRFN 378

Query: 521 KEAI 532
            E +
Sbjct: 379 LEEV 382

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>YEPA_SCHPO (O14470) Putative chromatin regulator protein C23H3.10|
          Length = 503

 Score = 34.7 bits (78), Expect = 0.20
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 368 QRERWTEAEHKRFLEALKLYGRAWQRIEEHVGTKTAVQIRSH 493
           + + W+  E    LEA++ YG  W +I  HVG++T  Q   H
Sbjct: 246 EEKPWSNQETLLLLEAIETYGDDWNQIALHVGSRTKEQCLIH 287

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>MYBH_DICDI (P34127) Myb-like protein (Fragment)|
          Length = 451

 Score = 34.3 bits (77), Expect = 0.26
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = +2

Query: 308 INSSGEETVIKVRKPYTITKQRE-RWTEAEHKRFLEALKLYGRA-WQRIEEHVGTKTAVQ 481
           IN++G   +     P    K+ + +WT  E +  ++A+ L+ +  W++I EH   +T VQ
Sbjct: 127 INNNGNSNISNNNTPKVEKKKTKGKWTSEEDQILIKAVNLHNQKNWKKIAEHFPDRTDVQ 186

Query: 482 IRSHAQK 502
                QK
Sbjct: 187 CHHRYQK 193

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>RCOR3_HUMAN (Q9P2K3) REST corepressor 3|
          Length = 495

 Score = 33.5 bits (75), Expect = 0.45
 Identities = 16/70 (22%), Positives = 34/70 (48%)
 Frame = +2

Query: 323 EETVIKVRKPYTITKQRERWTEAEHKRFLEALKLYGRAWQRIEEHVGTKTAVQIRSHAQK 502
           E  + + + P +  K   RWT  E    ++ ++ YG+ +Q I + +G KT  Q+++    
Sbjct: 271 EGGIEEFKPPESNQKINARWTTEEQLLAVQGVRKYGKDFQAIADVIGNKTVGQVKNFFVN 330

Query: 503 FFTKLEKEAI 532
           +  +   E +
Sbjct: 331 YRRRFNLEEV 340

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>TCPB_MOUSE (P80314) T-complex protein 1 subunit beta (TCP-1-beta) (CCT-beta)|
          Length = 534

 Score = 33.1 bits (74), Expect = 0.59
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
 Frame = +2

Query: 296 LEMEINSSGEETVIKVRKPYTITKQRERWTEAEHKRFLEALKLYG----RAWQRIEEHVG 463
           L  E+    E  + K   P TI       T+A  +  L +   +G    R WQ +    G
Sbjct: 104 LAAELLREAESLIAKKIHPQTIISGWREATKAAREALLSSAVDHGSDEARFWQDLMNIAG 163

Query: 464 TKTAVQIRSHAQKFFTKLEKEAI 532
           T  + ++ +H +  FTKL  EA+
Sbjct: 164 TTLSSKLLTHHKDHFTKLAVEAV 186

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>NCOR2_HUMAN (Q9Y618) Nuclear receptor corepressor 2 (N-CoR2) (Silencing|
           mediator of retinoic acid and thyroid hormone receptor)
           (SMRT) (SMRTe) (Thyroid-,
           retinoic-acid-receptor-associated corepressor) (T3
           receptor-associating factor) (TRAC) (CTG repeat p
          Length = 2517

 Score = 32.7 bits (73), Expect = 0.77
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 368 QRERWTEAEHKRFLEALKLYGRAWQRIEEHVGTKTAVQIRS 490
           +  RWTE E +   + L  +GR W  I   VG+KT  Q ++
Sbjct: 611 ESSRWTEEEMETAKKGLLEHGRNWSAIARMVGSKTVSQCKN 651

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>RCOR2_BRARE (Q6P116) REST corepressor 2|
          Length = 536

 Score = 32.7 bits (73), Expect = 0.77
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +2

Query: 365 KQRERWTEAEHKRFLEALKLYGRAWQRIEEHVGTKTAVQIRSHAQKFFTKLEKEAI 532
           K   RWT  E    ++A++ YG+ +  I + +G KT  Q+ S    +  +   E +
Sbjct: 328 KINSRWTTEEQLLAVQAVRRYGKDFAAIADVIGNKTVAQVSSFFVSYRRRFNLEEV 383

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>NCOR2_MOUSE (Q9WU42) Nuclear receptor corepressor 2 (N-CoR2) (Silencing|
           mediator of retinoic acid and thyroid hormone receptor)
           (SMRT) (SMRTe) (Thyroid-,
           retinoic-acid-receptor-associated corepressor) (T3
           receptor-associating factor) (TRAC)
          Length = 2472

 Score = 32.7 bits (73), Expect = 0.77
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 368 QRERWTEAEHKRFLEALKLYGRAWQRIEEHVGTKTAVQIRS 490
           +  RWTE E +   + L  +GR W  I   VG+KT  Q ++
Sbjct: 607 ESSRWTEEEMETAKKGLLEHGRNWSAIARMVGSKTVSQCKN 647

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>NCOR1_MOUSE (Q60974) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR) (Retinoid|
           X receptor-interacting protein 13) (RIP13)
          Length = 2453

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +2

Query: 368 QRERWTEAEHKRFLEALKLYGRAWQRIEEHVGTKTAVQIRS 490
           +  RWTE E +   + L  +GR W  I + VGTK+  Q ++
Sbjct: 623 ETSRWTEEEMEVAKKGLVEHGRNWAAIAKMVGTKSEAQCKN 663

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>NCOR1_HUMAN (O75376) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR)|
          Length = 2440

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +2

Query: 368 QRERWTEAEHKRFLEALKLYGRAWQRIEEHVGTKTAVQIRS 490
           +  RWTE E +   + L  +GR W  I + VGTK+  Q ++
Sbjct: 624 ETSRWTEEEMEVAKKGLVEHGRNWAAIAKMVGTKSEAQCKN 664

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>RCOR_CAEEL (Q18919) REST corepressor spr-1 (CoREST) (Suppressor of presenilin|
           1)
          Length = 558

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = +2

Query: 380 WTEAEHKRFLEALKLYGRAWQRIEEHVGTKTAVQIRS---HAQKFFTKLEKEAINNGTSP 550
           WT+ E  + +    +YG  ++ I + +GTKT  Q+       QK     ++E + +  +P
Sbjct: 486 WTQLERSQVIRCFNMYGAHFEHIADVIGTKTPDQVYQFYLENQKAIDAADEEFLADMKNP 545

Query: 551 GQAHDID 571
            +  D++
Sbjct: 546 ERLADME 552

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>ARR19_ARATH (Q9M9B9) Putative two-component response regulator ARR19|
          Length = 407

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
 Frame = +2

Query: 365 KQRERWTEAEHKRFLEALKLYG---RAWQRI------EEHVGTKTAVQIRSHAQKFFTKL 517
           K R  WTE  H++FLEA+++ G   +A  ++      E  +   T   + SH QK    L
Sbjct: 215 KPRMTWTEELHQKFLEAIEIIGGIEKANPKVLVECLQEMRIEGITRSNVASHLQKHRINL 274

Query: 518 EKEAINNGT 544
           E+  I   T
Sbjct: 275 EENQIPQQT 283

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>RSC8_YEAST (P43609) Chromatin structure remodeling complex protein RSC8|
           (Remodel the structure of chromatin complex subunit 8)
           (SWI3 homolog)
          Length = 557

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +2

Query: 371 RERWTEAEHKRFLEALKLYGRAWQRIEEHVGTKTAVQ 481
           ++ W++ E    LE +++Y   W++I +HVG    V+
Sbjct: 312 KKNWSDQEMLLLLEGIEMYEDQWEKIADHVGGHKRVE 348

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>TBF1_YEAST (Q02457) Protein TBF1 (TTAGGG repeat-binding factor 1) (TBF alpha)|
          Length = 562

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 10/75 (13%)
 Frame = +2

Query: 311 NSSGEETVIKVRKPYTITKQRERWTEAEHKRFLEALKLYGRAWQ----------RIEEHV 460
           ++S     I +RKP    K +  W++ E +  +E LK  G +W           +I E++
Sbjct: 393 SNSNNNGSIGLRKP----KAKRTWSKEEEEALVEGLKEVGPSWSKILDLYGPGGKITENL 448

Query: 461 GTKTAVQIRSHAQKF 505
             +T VQ++  A+ +
Sbjct: 449 KNRTQVQLKDKARNW 463

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>MYBA_CHICK (P52550) Myb-related protein A (A-Myb)|
          Length = 757

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +2

Query: 368 QRERWTEAEHKRFLEALKLYGRAWQRIEEHVGTKTAVQIRSHAQKFF-TKLEKEA-INNG 541
           ++  WTEAE +   EA K  G  W  I + +  +T   I++H       K+E+E  + +G
Sbjct: 138 KKSSWTEAEDRVIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKVEQEGYLQDG 197

Query: 542 T 544
           T
Sbjct: 198 T 198

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>SWI3_YEAST (P32591) Transcription regulatory protein SWI3 (SWI/SNF complex|
           component SWI3) (Transcription factor TYE2)
          Length = 825

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 12/52 (23%), Positives = 30/52 (57%)
 Frame = +2

Query: 326 ETVIKVRKPYTITKQRERWTEAEHKRFLEALKLYGRAWQRIEEHVGTKTAVQ 481
           ET   ++K   + +  E W++ + ++ L+ ++ +G  W ++ ++VG K+  Q
Sbjct: 509 ETSRPLKKVKILEQIDENWSKEDLQKLLKGIQEFGADWYKVAKNVGNKSPEQ 560

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>BAS1_YEAST (P22035) Myb-like DNA-binding protein BAS1|
          Length = 811

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 18/76 (23%), Positives = 35/76 (46%)
 Frame = +2

Query: 284 ISLELEMEINSSGEETVIKVRKPYTITKQRERWTEAEHKRFLEALKLYGRAWQRIEEHVG 463
           IS+++         +  I+V  P +  + RE WT  E    +  +K YG  W++I   + 
Sbjct: 141 ISMDIPGRTEDQCAKRYIEVLGPGSKGRLRE-WTLEEDLNLISKVKAYGTKWRKISSEME 199

Query: 464 TKTAVQIRSHAQKFFT 511
            + ++  R+  +K  T
Sbjct: 200 FRPSLTCRNRWRKIIT 215

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>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein|
           (Atrophin-2)
          Length = 1558

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = +2

Query: 341 VRKPYTITKQRER-WTEAEHKRFLEALKLYGRAWQRIEEHV 460
           V+KP  + K  E+ WTE E KRF++ L+ YG+ + RI + +
Sbjct: 384 VKKP--VPKLIEKCWTEDEVKRFVKGLRQYGKNFFRIRKEL 422

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>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein|
           (Atrophin-1-related protein)
          Length = 1559

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = +2

Query: 341 VRKPYTITKQRER-WTEAEHKRFLEALKLYGRAWQRIEEHV 460
           V+KP  + K  E+ WTE E KRF++ L+ YG+ + RI + +
Sbjct: 383 VKKP--VPKLIEKCWTEDEVKRFVKGLRQYGKNFFRIRKEL 421

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>RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats protein|
           (Atrophin-1-like protein) (Atrophin-1-related protein)
          Length = 1566

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = +2

Query: 341 VRKPYTITKQRER-WTEAEHKRFLEALKLYGRAWQRIEEHV 460
           V+KP  + K  E+ WTE E KRF++ L+ YG+ + RI + +
Sbjct: 384 VKKP--VPKLIEKCWTEDEVKRFVKGLRQYGKNFFRIRKEL 422

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>DRL1_ARATH (P60838) Probable disease resistance protein At1g12280|
          Length = 894

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +2

Query: 290 LELEMEINSSGEETVIKVRKPYTITKQRERW-TEAEHKRFLEALKLYGRAWQ 442
           L L+ EI    EE VIK ++   +  +R  W  EA   RFL   K +G  WQ
Sbjct: 840 LPLDSEIAIRDEELVIKYQEEEWL--ERVEWDNEATRLRFLPFFKFFGPEWQ 889

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>ISW1_CAEEL (P41877) Chromatin remodelling complex ATPase chain isw-1 (EC|
            3.6.1.-)
          Length = 1009

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
 Frame = +2

Query: 299  EMEINSSGEETVIKVRKPYTITKQRER----------WTEAEHKRFLEALKLYGRAWQRI 448
            E E   + E+ +I   +P T  +Q E+          WT+ E ++F+   + YGR     
Sbjct: 765  EAEKRQAEEQKLINNARPLTDKEQEEKAELLTQSVTDWTKREFQQFVRGNEKYGREDLES 824

Query: 449  EEHVGTKTAVQIRSHAQKFFTKLEK 523
                  +   +I+S+A+ F+ ++E+
Sbjct: 825  IAKEMERPLEEIQSYAKVFWERIEE 849

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>APRR2_ARATH (Q6LA43) Two-component response regulator-like APRR2|
           (Pseudo-response regulator 2) (TOC2 protein)
          Length = 535

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
 Frame = +2

Query: 362 TKQRERWTEAEHKRFLEALKLYG---RAWQRIEE--HVGTKTAVQIRSHAQKF 505
           ++++  WT   HK+F++A++  G       RI E   VGT T   + SH QKF
Sbjct: 295 SRKKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVGTLTRHNVASHLQKF 347

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>YD3A_SCHPO (Q10274) Hypothetical protein C13G7.10 in chromosome I|
          Length = 390

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 365 KQRERWTEAEHKRFLEALKLYGRAWQRIEE 454
           K+R+++T  E +R LE   L+G  W RI +
Sbjct: 138 KERKQFTPEEDERLLEGFFLHGPCWTRISK 167


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,659,492
Number of Sequences: 219361
Number of extensions: 1481355
Number of successful extensions: 4576
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 4381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4572
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4929664480
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result