ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal28n16 |
|---|---|
| Clone Library Name | barley_pub |
>RED_MOUSE (Q9Z1M8) Protein Red (Protein RER) (IK factor) (Cytokine IK)| Length = 557 Score = 142 bits (357), Expect = 9e-34 Identities = 79/182 (43%), Positives = 120/182 (65%), Gaps = 11/182 (6%) Frame = +3 Query: 12 NPDYEPTEL----GSFHAVAPPG-ADLRLEDAQKISIEKSKYLGGDLEHTHLVKGLDFAL 176 N DYE TEL ++ AV P AD + ++ I++SK+LGGD+EHTHLVKGLDFAL Sbjct: 111 NKDYEETELISTTANYRAVGPTAEADKSAAEKRRQLIQESKFLGGDMEHTHLVKGLDFAL 170 Query: 177 LNKVRSEI-DKKPDAEDGKDAKARETKED----RAVSFRTAIAKSVYQWTVKQQQSMIKA 341 L KVR+EI K+ + E+ + +ETK+D + F+T + ++VY+ K + + Sbjct: 171 LQKVRAEIASKEKEEEELMEKPQKETKKDEDPENKIEFKTRLGRNVYRMLFKSKS--YER 228 Query: 342 NDMFLPGRMAFIYNMEDG-LNSDIPTTLHRSKADCPVPEEMVTVSVDGSVLDRIAKIMSY 518 N++FLPGRMA++ +++D ++DIPTTL RSKADCP E T++ + V+ ++ +I+SY Sbjct: 229 NELFLPGRMAYVVDLDDEYADTDIPTTLIRSKADCPTMEAQTTLTTNDIVISKLTQILSY 288 Query: 519 LR 524 LR Sbjct: 289 LR 290
>RED_HUMAN (Q13123) Protein Red (Protein RER) (IK factor) (Cytokine IK)| Length = 557 Score = 139 bits (351), Expect = 4e-33 Identities = 79/182 (43%), Positives = 118/182 (64%), Gaps = 11/182 (6%) Frame = +3 Query: 12 NPDYEPTEL----GSFHAVAPPG-ADLRLEDAQKISIEKSKYLGGDLEHTHLVKGLDFAL 176 N DYE TEL ++ AV P AD + ++ I++SK+LGGD+EHTHLVKGLDFAL Sbjct: 111 NKDYEETELISTTANYRAVGPTAEADKSAAEKRRQLIQESKFLGGDMEHTHLVKGLDFAL 170 Query: 177 LNKVRSEI-DKKPDAEDGKDAKARETKED----RAVSFRTAIAKSVYQWTVKQQQSMIKA 341 L KVR EI K + E+ + +ETK+D + F+T + ++VY+ K + + Sbjct: 171 LQKVRLEIASKDKEEEELMEKPQKETKKDEDPENKIEFKTRLGRNVYRMLFKSK--AYER 228 Query: 342 NDMFLPGRMAFIYNMEDG-LNSDIPTTLHRSKADCPVPEEMVTVSVDGSVLDRIAKIMSY 518 N++FLPGRMA++ +++D ++DIPTTL RSKADCP E T++ + V+ ++ +I+SY Sbjct: 229 NELFLPGRMAYVVDLDDEYADTDIPTTLIRSKADCPTMEAQTTLTTNDIVISKLTQILSY 288 Query: 519 LR 524 LR Sbjct: 289 LR 290
>YK13_CAEEL (P34337) Putative tyrosine-protein phosphatase C15H7.3 (EC| 3.1.3.48) Length = 398 Score = 33.9 bits (76), Expect = 0.34 Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 7/95 (7%) Frame = +3 Query: 219 EDGKDAKARETKEDRAVSFRTAIAKSVYQWTVKQQQSMIKANDMFLPGRMAFIYNMEDGL 398 ++ KD K E KE+R + + + W+ ++ + AN F + + D Sbjct: 81 DEKKDDKKEEKKEERKEEKKEEVKEP---WSEEEPAKRMVANGFFTTTNVGGTFKQTDNF 137 Query: 399 NSDIPT------TLHRSKA-DCPVPEEMVTVSVDG 482 + + + +H+ +A DCP+PEE + +G Sbjct: 138 KTPMDSCPSFKNNMHKIRAPDCPIPEEKLVKLTNG 172
>TAL2_STRCO (Q9XAC0) Transaldolase 2 (EC 2.2.1.2)| Length = 372 Score = 32.7 bits (73), Expect = 0.76 Identities = 21/59 (35%), Positives = 32/59 (54%) Frame = +3 Query: 78 RLEDAQKISIEKSKYLGGDLEHTHLVKGLDFALLNKVRSEIDKKPDAEDGKDAKARETK 254 ++ DA +EK+K G DL H V +++V +EIDK+ DA +AKA+ K Sbjct: 174 KVMDAFLTGLEKAKERGLDLSQIHSVASF---FVSRVDTEIDKRIDALGTDEAKAQRGK 229
>BAGS_BOMMO (Q9BLJ6) BAG domain-containing protein Samui| Length = 677 Score = 32.0 bits (71), Expect = 1.3 Identities = 23/68 (33%), Positives = 29/68 (42%) Frame = +3 Query: 60 PPGADLRLEDAQKISIEKSKYLGGDLEHTHLVKGLDFALLNKVRSEIDKKPDAEDGKDAK 239 PP AD R ED +K GGD E K KV + K+ ++D KDA Sbjct: 588 PPAADTRPED--------NKSTGGDAEKKEDKKSTP----KKVTKTVKKRDKSKDKKDAP 635 Query: 240 ARETKEDR 263 KED+ Sbjct: 636 KDSNKEDK 643
>TAL2_STRAW (Q829U5) Transaldolase 2 (EC 2.2.1.2)| Length = 372 Score = 32.0 bits (71), Expect = 1.3 Identities = 21/56 (37%), Positives = 29/56 (51%) Frame = +3 Query: 87 DAQKISIEKSKYLGGDLEHTHLVKGLDFALLNKVRSEIDKKPDAEDGKDAKARETK 254 DA +EK+K G DL H V +++V +EIDK+ DA +AKA K Sbjct: 177 DAYLAGLEKAKERGLDLSKIHSVASF---FVSRVDTEIDKRIDALGTPEAKAARGK 229
>SOX_CAEEL (Q18006) Putative sarcosine oxidase (EC 1.5.3.1)| Length = 384 Score = 29.6 bits (65), Expect = 6.4 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Frame = +3 Query: 345 DMFLPGRMAFIYNMEDGLNSDIPTTLHRSKADCPVPEEMV---TVSVDGSVLDRIAK 506 D PG M F Y+ D L D+ RS+ +P + + VDGS RI K Sbjct: 258 DTDYPGSMKFCYHFGDALTQDLAHPAQRSQRCIDLPAKFIQKYMPVVDGSAPTRIDK 314
>L_SENDZ (P06447) Large structural protein (Protein L) (Transcriptase)| (Replicase) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)] Length = 2228 Score = 29.6 bits (65), Expect = 6.4 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = -1 Query: 544 TFPDDPSLRYDMILAILSSTEPSTLT 467 TF DDP LRY + ++ PSTLT Sbjct: 1647 TFLDDPVLRYSQLTGLVIKVFPSTLT 1672
>L_SENDO (O55528) Large structural protein (Protein L) (Transcriptase)| (Replicase) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)] Length = 2228 Score = 29.6 bits (65), Expect = 6.4 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = -1 Query: 544 TFPDDPSLRYDMILAILSSTEPSTLT 467 TF DDP LRY + ++ PSTLT Sbjct: 1647 TFLDDPVLRYSQLTGLVIKVFPSTLT 1672
>L_SENDF (Q06996) Large structural protein (Protein L) (Transcriptase)| (Replicase) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)] Length = 2228 Score = 29.6 bits (65), Expect = 6.4 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = -1 Query: 544 TFPDDPSLRYDMILAILSSTEPSTLT 467 TF DDP LRY + ++ PSTLT Sbjct: 1647 TFLDDPVLRYSQLTGLVIKVFPSTLT 1672
>L_SENDE (P06829) Large structural protein (Protein L) (Transcriptase)| (Replicase) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)] Length = 2228 Score = 29.6 bits (65), Expect = 6.4 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = -1 Query: 544 TFPDDPSLRYDMILAILSSTEPSTLT 467 TF DDP LRY + ++ PSTLT Sbjct: 1647 TFLDDPVLRYSQLTGLVIKVFPSTLT 1672
>L_SENDA (Q9DUD8) Large structural protein (Protein L) (Transcriptase)| (Replicase) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)] Length = 2228 Score = 29.6 bits (65), Expect = 6.4 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = -1 Query: 544 TFPDDPSLRYDMILAILSSTEPSTLT 467 TF DDP LRY + ++ PSTLT Sbjct: 1647 TFLDDPVLRYSQLTGLVIKVFPSTLT 1672
>UVRC_ZYMMO (Q5NPR4) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 664 Score = 29.3 bits (64), Expect = 8.4 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 10/68 (14%) Frame = +3 Query: 3 EDXNPDYEPTEL----------GSFHAVAPPGADLRLEDAQKISIEKSKYLGGDLEHTHL 152 E +PD+ +E G HAV A+ + D + I K EH HL Sbjct: 504 ERSDPDHSSSEWPDLLLIDGGKGQVHAVKDILAEQGISDIAIVGISKGPDRNAGREHFHL 563 Query: 153 VKGLDFAL 176 V G ++AL Sbjct: 564 VDGSEYAL 571
>GSTF_HYOMU (P46423) Glutathione S-transferase (EC 2.5.1.18) (GST class-phi)| (25 kDa auxin-binding protein) Length = 212 Score = 29.3 bits (64), Expect = 8.4 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%) Frame = +3 Query: 87 DAQKISIEKSKYLGGD---LEHTHLVKGLDFALLNKVRSEIDKKP 212 D + ++ SKYLGGD L H +++ + KV+S D +P Sbjct: 145 DVYESRLKDSKYLGGDSFTLADLHHAPAMNYLMGTKVKSLFDSRP 189 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,559,905 Number of Sequences: 219361 Number of extensions: 1601376 Number of successful extensions: 4625 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4508 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4619 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4872342800 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
