| Clone Name | baal28n12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 537 bits (271), Expect = e-149 Identities = 423/474 (89%) Strand = Plus / Minus Query: 5 gttttcacagancttgagatggattccctgaagagctctgaaaatgaagaatcaggacgc 64 ||||| ||||| || ||| ||||||||| |||||| | |||||||||||| ||| ||| Sbjct: 19956086 gttttgacagagctcgagttggattcccccaagagcacagaaaatgaagaaatagggcgc 19956027 Query: 65 ttgatcactccccaggaggcatgtaatcgtattgcagaggtagtccaagaagctgtcaga 124 ||||||||||| |||||||| |||||||||||||||||||| ||||| ||||| || | | Sbjct: 19956026 ttgatcactcctcaggaggcctgtaatcgtattgcagaggttgtccatgaagccgttaaa 19955967 Query: 125 aagatggagcttgttgctgaagagaaaatgggactgtacaaaaaggctcgcaccgccgtg 184 |||||||||||||||||||||||||||||| |||| |||||||||||||||| || ||| Sbjct: 19955966 aagatggagcttgttgctgaagagaaaatgcgactctacaaaaaggctcgcattgctgtg 19955907 Query: 185 gaggcctgtgaccgtgagcttgatgagaaggccagacaagttcaggagttcaaggccgag 244 |||||||||||||| |||||||| |||||||||||| | |||||||| | ||||||||| Sbjct: 19955906 gaggcctgtgaccgggagcttgacgagaaggccagagagcttcaggagctgaaggccgag 19955847 Query: 245 aggctgcggaagaagcagcaggtggaggagctcgaaagcattgttcggttgaaacaggcc 304 |||||||| ||||||||||||||||| ||||| || |||||||| |||||||| |||||| Sbjct: 19955846 aggctgcgcaagaagcagcaggtggatgagctagagagcattgtccggttgaagcaggcc 19955787 Query: 305 gaggccgagatgttccagctcaaagcaagcgaggcccgccaggaggctgagaggctccag 364 |||||||||||||||||||| || |||| ||||||||| ||||||||||| ||||||||| Sbjct: 19955786 gaggccgagatgttccagctgaaggcaaacgaggcccgtcaggaggctgacaggctccag 19955727 Query: 365 agcatcgcgcttgccaaatctgagagggctgagcaggactatgctagcctctacctcaag 424 ||||||||||||||||||||||||||||| ||||||||||| || ||||| ||||| ||| Sbjct: 19955726 agcatcgcgcttgccaaatctgagagggccgagcaggactacgccagcctatacctgaag 19955667 Query: 425 cggcgcctggaggaagcggaggcagagaagcagtttcttttcgagaaaataaag 478 || |||||||||||||| || |||||||||||||| || ||||||||||||||| Sbjct: 19955666 cgccgcctggaggaagctgaagcagagaagcagttcctcttcgagaaaataaag 19955613
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 537 bits (271), Expect = e-149 Identities = 423/474 (89%) Strand = Plus / Minus Query: 5 gttttcacagancttgagatggattccctgaagagctctgaaaatgaagaatcaggacgc 64 ||||| ||||| || ||| ||||||||| |||||| | |||||||||||| ||| ||| Sbjct: 19882300 gttttgacagagctcgagttggattcccccaagagcacagaaaatgaagaaatagggcgc 19882241 Query: 65 ttgatcactccccaggaggcatgtaatcgtattgcagaggtagtccaagaagctgtcaga 124 ||||||||||| |||||||| |||||||||||||||||||| ||||| ||||| || | | Sbjct: 19882240 ttgatcactcctcaggaggcctgtaatcgtattgcagaggttgtccatgaagccgttaaa 19882181 Query: 125 aagatggagcttgttgctgaagagaaaatgggactgtacaaaaaggctcgcaccgccgtg 184 |||||||||||||||||||||||||||||| |||| |||||||||||||||| || ||| Sbjct: 19882180 aagatggagcttgttgctgaagagaaaatgcgactctacaaaaaggctcgcattgctgtg 19882121 Query: 185 gaggcctgtgaccgtgagcttgatgagaaggccagacaagttcaggagttcaaggccgag 244 |||||||||||||| |||||||| |||||||||||| | |||||||| | ||||||||| Sbjct: 19882120 gaggcctgtgaccgggagcttgacgagaaggccagagagcttcaggagctgaaggccgag 19882061 Query: 245 aggctgcggaagaagcagcaggtggaggagctcgaaagcattgttcggttgaaacaggcc 304 |||||||| ||||||||||||||||| ||||| || |||||||| |||||||| |||||| Sbjct: 19882060 aggctgcgcaagaagcagcaggtggatgagctagagagcattgtccggttgaagcaggcc 19882001 Query: 305 gaggccgagatgttccagctcaaagcaagcgaggcccgccaggaggctgagaggctccag 364 |||||||||||||||||||| || |||| ||||||||| ||||||||||| ||||||||| Sbjct: 19882000 gaggccgagatgttccagctgaaggcaaacgaggcccgtcaggaggctgacaggctccag 19881941 Query: 365 agcatcgcgcttgccaaatctgagagggctgagcaggactatgctagcctctacctcaag 424 ||||||||||||||||||||||||||||| ||||||||||| || ||||| ||||| ||| Sbjct: 19881940 agcatcgcgcttgccaaatctgagagggccgagcaggactacgccagcctatacctgaag 19881881 Query: 425 cggcgcctggaggaagcggaggcagagaagcagtttcttttcgagaaaataaag 478 || |||||||||||||| || |||||||||||||| || ||||||||||||||| Sbjct: 19881880 cgccgcctggaggaagctgaagcagagaagcagttcctcttcgagaaaataaag 19881827
>emb|AL731888.5|CNS08C8S Oryza sativa chromosome 12, . BAC OJ1118_C12 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 165433 Score = 537 bits (271), Expect = e-149 Identities = 423/474 (89%) Strand = Plus / Plus Query: 5 gttttcacagancttgagatggattccctgaagagctctgaaaatgaagaatcaggacgc 64 ||||| ||||| || ||| ||||||||| |||||| | |||||||||||| ||| ||| Sbjct: 71174 gttttgacagagctcgagttggattcccccaagagcacagaaaatgaagaaatagggcgc 71233 Query: 65 ttgatcactccccaggaggcatgtaatcgtattgcagaggtagtccaagaagctgtcaga 124 ||||||||||| |||||||| |||||||||||||||||||| ||||| ||||| || | | Sbjct: 71234 ttgatcactcctcaggaggcctgtaatcgtattgcagaggttgtccatgaagccgttaaa 71293 Query: 125 aagatggagcttgttgctgaagagaaaatgggactgtacaaaaaggctcgcaccgccgtg 184 |||||||||||||||||||||||||||||| |||| |||||||||||||||| || ||| Sbjct: 71294 aagatggagcttgttgctgaagagaaaatgcgactctacaaaaaggctcgcattgctgtg 71353 Query: 185 gaggcctgtgaccgtgagcttgatgagaaggccagacaagttcaggagttcaaggccgag 244 |||||||||||||| |||||||| |||||||||||| | |||||||| | ||||||||| Sbjct: 71354 gaggcctgtgaccgggagcttgacgagaaggccagagagcttcaggagctgaaggccgag 71413 Query: 245 aggctgcggaagaagcagcaggtggaggagctcgaaagcattgttcggttgaaacaggcc 304 |||||||| ||||||||||||||||| ||||| || |||||||| |||||||| |||||| Sbjct: 71414 aggctgcgcaagaagcagcaggtggatgagctagagagcattgtccggttgaagcaggcc 71473 Query: 305 gaggccgagatgttccagctcaaagcaagcgaggcccgccaggaggctgagaggctccag 364 |||||||||||||||||||| || |||| ||||||||| ||||||||||| ||||||||| Sbjct: 71474 gaggccgagatgttccagctgaaggcaaacgaggcccgtcaggaggctgacaggctccag 71533 Query: 365 agcatcgcgcttgccaaatctgagagggctgagcaggactatgctagcctctacctcaag 424 ||||||||||||||||||||||||||||| ||||||||||| || ||||| ||||| ||| Sbjct: 71534 agcatcgcgcttgccaaatctgagagggccgagcaggactacgccagcctatacctgaag 71593 Query: 425 cggcgcctggaggaagcggaggcagagaagcagtttcttttcgagaaaataaag 478 || |||||||||||||| || |||||||||||||| || ||||||||||||||| Sbjct: 71594 cgccgcctggaggaagctgaagcagagaagcagttcctcttcgagaaaataaag 71647
>gb|AY111163.1| Zea mays CL49804_1 mRNA sequence Length = 804 Score = 69.9 bits (35), Expect = 8e-09 Identities = 62/71 (87%) Strand = Plus / Minus Query: 254 aagaagcagcaggtggaggagctcgaaagcattgttcggttgaaacaggccgaggccgag 313 ||||||||||||||||||||||| || ||||| || |||||||| ||||| || || ||| Sbjct: 798 aagaagcagcaggtggaggagctggagagcatcgtgcggttgaagcaggcggaagcggag 739 Query: 314 atgttccagct 324 ||||| ||||| Sbjct: 738 atgttgcagct 728 Score = 44.1 bits (22), Expect = 0.46 Identities = 34/38 (89%) Strand = Plus / Minus Query: 395 gagcaggactatgctagcctctacctcaagcggcgcct 432 |||||||||||||| ||| | ||||| ||||||||||| Sbjct: 657 gagcaggactatgccagcatgtacctaaagcggcgcct 620
>gb|AY271743.1| Pisum sativum Potyvirus VPg interacting protein mRNA, partial cds Length = 1828 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 347 gaggctgagaggctccagagcatcgcgcttgccaaatctga 387 |||||||||||||||||||| ||||| |||||||| ||||| Sbjct: 1265 gaggctgagaggctccagagaatcgcacttgccaagtctga 1305
>gb|AY271742.1| Nicotiana benthamiana Potyvirus VPg interacting protein mRNA, complete cds Length = 2103 Score = 48.1 bits (24), Expect = 0.030 Identities = 39/44 (88%) Strand = Plus / Plus Query: 443 gaggcagagaagcagtttcttttcgagaaaataaagcttcagga 486 |||||||||||||||| | | || ||||| |||||||||||||| Sbjct: 1703 gaggcagagaagcagtatttgtttgagaagataaagcttcagga 1746
>gb|AC149679.2| Bos taurus BAC CH240-27A8 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 196187 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 503 caggcgagcagcagcgtgcctgg 525 ||||||||||||||||||||||| Sbjct: 96901 caggcgagcagcagcgtgcctgg 96923
>gb|AC092725.3| Homo sapiens chromosome 16 clone RP11-673P17, complete sequence Length = 205399 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 433 ggaggaagcggaggcagagaagcagtt 459 ||||||||| ||||||||||||||||| Sbjct: 116435 ggaggaagctgaggcagagaagcagtt 116409
>gb|AC146039.2| Pan troglodytes BAC clone RP43-97H7 from 7, complete sequence Length = 144149 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 220 acaagttcaggagttcaaggcc 241 |||||||||||||||||||||| Sbjct: 2081 acaagttcaggagttcaaggcc 2060
>gb|AC073331.6| Homo sapiens BAC clone RP11-409M7 from 7, complete sequence Length = 40133 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 220 acaagttcaggagttcaaggcc 241 |||||||||||||||||||||| Sbjct: 7776 acaagttcaggagttcaaggcc 7797
>emb|AL162293.22| Human DNA sequence from clone RP4-640H8 on chromosome 20 Contains GSSs, complete sequence Length = 39617 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 220 acaagttcaggagttcaaggcc 241 |||||||||||||||||||||| Sbjct: 27393 acaagttcaggagttcaaggcc 27414
>gb|AC112650.2| Homo sapiens 3 BAC RP11-3J16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 108449 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 223 agttcaggagttcaaggccgag 244 |||||||||||||||||||||| Sbjct: 90125 agttcaggagttcaaggccgag 90146
>gb|AC167815.3| Mus musculus BAC clone RP23-463H10 from chromosome 5, complete sequence Length = 198336 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 443 gaggcagagaagcagtttctt 463 ||||||||||||||||||||| Sbjct: 11294 gaggcagagaagcagtttctt 11314
>gb|AC138679.10| Mus musculus chromosome 5, clone RP23-177I4, complete sequence Length = 230184 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 443 gaggcagagaagcagtttctt 463 ||||||||||||||||||||| Sbjct: 108979 gaggcagagaagcagtttctt 108959
>emb|AJ535200.1|PFR535200 Propionibacterium freudenreichii subsp. shermanii hsp20_1 gene for putative heat shock protein 20_1 Length = 474 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 423 agcggcgcctggaggaagcggaggc 447 ||||||||| ||||||||||||||| Sbjct: 200 agcggcgcccggaggaagcggaggc 224
>gb|AC093400.5| Homo sapiens BAC clone RP11-8M15 from 2, complete sequence Length = 17890 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 41 tctgaaaatgaagaatcagga 61 ||||||||||||||||||||| Sbjct: 3073 tctgaaaatgaagaatcagga 3093
>gb|M11441.1|KPNLAC K. pneumoniae lac operon Length = 4812 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 262 gcaggtggaggagctcgaaag 282 ||||||||||||||||||||| Sbjct: 351 gcaggtggaggagctcgaaag 371
>emb|AJ310600.1|HEC310600 Hepatitis C virus partial mRNA for envelope protein 1 (e1 gene) and envelope protein 2 (e2 gene), clone sal1/8 Length = 410 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 328 agcaagcgaggcccgccagga 348 ||||||||||||||||||||| Sbjct: 100 agcaagcgaggcccgccagga 80
>gb|AC131803.3| Mus musculus BAC clone RP24-549I15 from chromosome 5, complete sequence Length = 168439 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 443 gaggcagagaagcagtttctt 463 ||||||||||||||||||||| Sbjct: 99442 gaggcagagaagcagtttctt 99462
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 412 cctctacctcaagcggcgcctggaggaag 440 |||||||| ||||||| |||||||||||| Sbjct: 24855 cctctaccacaagcggggcctggaggaag 24827
>ref|NM_124190.2| Arabidopsis thaliana protein binding / zinc ion binding AT5G48160 transcript variant AT5G48160.1 mRNA, complete cds Length = 1991 Score = 40.1 bits (20), Expect = 7.2 Identities = 38/44 (86%) Strand = Plus / Plus Query: 443 gaggcagagaagcagtttcttttcgagaaaataaagcttcagga 486 |||||||||||||||| ||| || ||||| || ||||| ||||| Sbjct: 1609 gaggcagagaagcagtatctgtttgagaagattaagctgcagga 1652
>ref|NM_001036954.1| Arabidopsis thaliana protein binding / zinc ion binding AT5G48160 transcript variant AT5G48160.2 mRNA, complete cds Length = 2091 Score = 40.1 bits (20), Expect = 7.2 Identities = 38/44 (86%) Strand = Plus / Plus Query: 443 gaggcagagaagcagtttcttttcgagaaaataaagcttcagga 486 |||||||||||||||| ||| || ||||| || ||||| ||||| Sbjct: 1705 gaggcagagaagcagtatctgtttgagaagattaagctgcagga 1748
>ref|NM_194213.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2868 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 253 gaagaagcagcaggtggaggagct 276 |||||||||||||| ||||||||| Sbjct: 1311 gaagaagcagcagggggaggagct 1334
>gb|AC099308.2| Drosophila melanogaster clone BACR11M14, complete sequence Length = 173097 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 ggccgagatgttccagctca 326 |||||||||||||||||||| Sbjct: 92015 ggccgagatgttccagctca 92034
>ref|XM_423391.1| PREDICTED: Gallus gallus hypothetical protein LOC395847 (LOC395847), mRNA Length = 4223 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 253 gaagaagcagcaggtggaggagct 276 ||||||||||||| |||||||||| Sbjct: 750 gaagaagcagcagctggaggagct 773
>ref|XM_874228.1| PREDICTED: Bos taurus similar to Voltage-dependent L-type calcium channel alpha-1S subunit (Voltage-gated calcium channel alpha subunit Cav1.1) (Calcium channel, L type, alpha-1 polypeptide, isoform 3, skeletal muscle), transcript variant 4 (LOC514814), mRNA Length = 2185 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 247 gctgcggaagaagcagcaggtggaggag 274 ||||||| ||||||||||| |||||||| Sbjct: 1105 gctgcgggagaagcagcagctggaggag 1132
>ref|XM_874141.1| PREDICTED: Bos taurus similar to Voltage-dependent L-type calcium channel alpha-1S subunit (Voltage-gated calcium channel alpha subunit Cav1.1) (Calcium channel, L type, alpha-1 polypeptide, isoform 3, skeletal muscle), transcript variant 3 (LOC514814), mRNA Length = 2176 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 247 gctgcggaagaagcagcaggtggaggag 274 ||||||| ||||||||||| |||||||| Sbjct: 1105 gctgcgggagaagcagcagctggaggag 1132
>ref|XM_864725.1| PREDICTED: Bos taurus similar to Voltage-dependent L-type calcium channel alpha-1S subunit (Voltage-gated calcium channel alpha subunit Cav1.1) (Calcium channel, L type, alpha-1 polypeptide, isoform 3, skeletal muscle), transcript variant 2 (LOC514814), mRNA Length = 2254 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 247 gctgcggaagaagcagcaggtggaggag 274 ||||||| ||||||||||| |||||||| Sbjct: 1105 gctgcgggagaagcagcagctggaggag 1132
>ref|XM_538035.2| PREDICTED: Canis familiaris similar to calcium channel, voltage-dependent, alpha 1F subunit (LOC480915), mRNA Length = 5118 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 247 gctgcggaagaagcagcaggtggaggag 274 ||||||| ||||||||||| |||||||| Sbjct: 1068 gctgcgggagaagcagcagttggaggag 1095
>gb|AC134248.3| Mus musculus BAC clone RP23-338G21 from chromosome 9, complete sequence Length = 206805 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 aagttcaggagttcaaggcc 241 |||||||||||||||||||| Sbjct: 89645 aagttcaggagttcaaggcc 89626
>emb|BX936291.25| Zebrafish DNA sequence from clone DKEY-250A11 in linkage group 13, complete sequence Length = 195395 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 tctgaaaatgaagaatcagg 60 |||||||||||||||||||| Sbjct: 74643 tctgaaaatgaagaatcagg 74624
>gb|AC130715.3| Mus musculus BAC clone RP23-460L16 from chromosome 2, complete sequence Length = 168935 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 aagttcaggagttcaaggcc 241 |||||||||||||||||||| Sbjct: 104952 aagttcaggagttcaaggcc 104933
>gb|AC124450.3| Mus musculus BAC clone RP24-215C4 from chromosome 13, complete sequence Length = 157531 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 aagttcaggagttcaaggcc 241 |||||||||||||||||||| Sbjct: 140497 aagttcaggagttcaaggcc 140478
>gb|AC123857.4| Mus musculus BAC clone RP23-344L21 from chromosome 13, complete sequence Length = 192371 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 aagttcaggagttcaaggcc 241 |||||||||||||||||||| Sbjct: 165745 aagttcaggagttcaaggcc 165764
>gb|AC091505.2| Sus scrofa clone RP44-331G21, complete sequence Length = 188095 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 237 aggccgagaggctgcggaagaagc 260 ||||||||||||||||| |||||| Sbjct: 132738 aggccgagaggctgcgggagaagc 132715
>ref|XM_723788.1| Plasmodium yoelii yoelii str. 17XNL dentin phosphoryn (PY01157) partial mRNA Length = 3750 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 467 gagaaaataaagcttcagga 486 |||||||||||||||||||| Sbjct: 1382 gagaaaataaagcttcagga 1401
>emb|CR679318.2|CNS0FN42 Tetraodon nigroviridis full-length cDNA Length = 1423 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 agagctctgaaaatgaagaa 55 |||||||||||||||||||| Sbjct: 907 agagctctgaaaatgaagaa 926
>emb|CR388371.8| Zebrafish DNA sequence from clone DKEY-78N12 in linkage group 6, complete sequence Length = 185878 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 tgagatggattccctgaaga 38 |||||||||||||||||||| Sbjct: 109319 tgagatggattccctgaaga 109338
>emb|AL354739.15| Human DNA sequence from clone RP11-379K8 on chromosome 13, complete sequence Length = 179790 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 468 agaaaataaagcttcaggac 487 |||||||||||||||||||| Sbjct: 129136 agaaaataaagcttcaggac 129155
>emb|AL049691.18|HSJ1123D4 Human DNA sequence from clone RP5-1123D4 on chromosome 20q12 Contains STSs and GSSs, complete sequence Length = 169243 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 gccaggaggctgagaggctc 361 |||||||||||||||||||| Sbjct: 93204 gccaggaggctgagaggctc 93185
>emb|X98122.1|MMTETRANE M.musculus gene encoding tetranectin Length = 10819 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 aagttcaggagttcaaggcc 241 |||||||||||||||||||| Sbjct: 2233 aagttcaggagttcaaggcc 2214
>emb|X04854.1|GGCERBA2 Chicken c-erb A gene exons 2-8 Length = 6307 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 428 cgcctggaggaagcggaggcagag 451 |||| ||||||||||||||||||| Sbjct: 34 cgcccggaggaagcggaggcagag 57
>gb|BC099522.1| Mus musculus RIKEN cDNA 1190007F08 gene, mRNA (cDNA clone IMAGE:30849005) Length = 865 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 agaagcagcaggtggaggag 274 |||||||||||||||||||| Sbjct: 160 agaagcagcaggtggaggag 179
>emb|BX901937.7| Zebrafish DNA sequence from clone DKEY-9I23 in linkage group 1, complete sequence Length = 204746 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 379 caaatctgagagggctgagcagga 402 ||||||||||||||| |||||||| Sbjct: 199725 caaatctgagagggcagagcagga 199702
>gb|AC008751.7| Homo sapiens chromosome 19 clone CTD-2623H2, complete sequence Length = 169089 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 acaagttcaggagttcaagg 239 |||||||||||||||||||| Sbjct: 21893 acaagttcaggagttcaagg 21912
>dbj|AK158109.1| Mus musculus adult inner ear cDNA, RIKEN full-length enriched library, clone:F930031K18 product:hypothetical protein, full insert sequence Length = 5094 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 agaagcagcaggtggaggag 274 |||||||||||||||||||| Sbjct: 1610 agaagcagcaggtggaggag 1629
>dbj|AK038662.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230053F13 product:unclassifiable, full insert sequence Length = 3998 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 agaagcagcaggtggaggag 274 |||||||||||||||||||| Sbjct: 1563 agaagcagcaggtggaggag 1582
>gb|AC024950.3|AC024950 Mus musculus strain C57BL6/J chromosome 6 clone RP23-208N9, complete sequence Length = 182382 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 aagttcaggagttcaaggcc 241 |||||||||||||||||||| Sbjct: 48840 aagttcaggagttcaaggcc 48859
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 253 gaagaagcagcaggtggaggagct 276 |||||||||||||| ||||||||| Sbjct: 193526 gaagaagcagcagggggaggagct 193549
>gb|AC006236.2| Homo sapiens chromosome 17, clone CTB-162E12, complete sequence Length = 98300 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 444 aggcagagaagcagtttctt 463 |||||||||||||||||||| Sbjct: 81118 aggcagagaagcagtttctt 81099
>ref|XM_227142.3| PREDICTED: Rattus norvegicus similar to OTTHUMP00000018288 (LOC310418), mRNA Length = 10230 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 gtgaccgtgagcttgatgag 211 |||||||||||||||||||| Sbjct: 8150 gtgaccgtgagcttgatgag 8131
>dbj|AP005187.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0446F04 Length = 175390 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 253 gaagaagcagcaggtggaggagct 276 |||||||||||||| ||||||||| Sbjct: 28390 gaagaagcagcagggggaggagct 28413
>emb|AL954847.17| Zebrafish DNA sequence from clone DKEY-68G8 in linkage group 13, complete sequence Length = 278040 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 tctgaaaatgaagaatcagg 60 |||||||||||||||||||| Sbjct: 141580 tctgaaaatgaagaatcagg 141599
>dbj|AB023039.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIF21 Length = 59372 Score = 40.1 bits (20), Expect = 7.2 Identities = 38/44 (86%) Strand = Plus / Minus Query: 443 gaggcagagaagcagtttcttttcgagaaaataaagcttcagga 486 |||||||||||||||| ||| || ||||| || ||||| ||||| Sbjct: 19834 gaggcagagaagcagtatctgtttgagaagattaagctgcagga 19791
>dbj|AK122009.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033111F13, full insert sequence Length = 3648 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 253 gaagaagcagcaggtggaggagct 276 |||||||||||||| ||||||||| Sbjct: 1830 gaagaagcagcagggggaggagct 1853
>gb|AE003569.4| Drosophila melanogaster chromosome X, section 70 of 74 of the complete sequence Length = 283558 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 ggccgagatgttccagctca 326 |||||||||||||||||||| Sbjct: 20689 ggccgagatgttccagctca 20670
>emb|AL160236.4|CNS01RH0 Human chromosome 14 DNA sequence BAC R-193F5 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 192401 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 145 agagaaaatgggactgtacaaaaa 168 ||||||||||| |||||||||||| Sbjct: 15818 agagaaaatggaactgtacaaaaa 15795
>gb|AC005785.1|AC005785 Homo sapiens chromosome 19, cosmid R33907, complete sequence Length = 41630 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 caagttcaggagttcaaggc 240 |||||||||||||||||||| Sbjct: 30682 caagttcaggagttcaaggc 30701
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 424 gcggcgcctggaggaagcgg 443 |||||||||||||||||||| Sbjct: 203512 gcggcgcctggaggaagcgg 203531
>emb|AL928713.16| Mouse DNA sequence from clone RP23-399M5 on chromosome 2, complete sequence Length = 212028 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 aagttcaggagttcaaggcc 241 |||||||||||||||||||| Sbjct: 203349 aagttcaggagttcaaggcc 203330
>emb|AL806525.23| Mouse DNA sequence from clone RP23-254N4 on chromosome 4, complete sequence Length = 209356 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 255 agaagcagcaggtggaggag 274 |||||||||||||||||||| Sbjct: 73544 agaagcagcaggtggaggag 73525
>emb|AL840625.9| Mouse DNA sequence from clone RP23-343F17 on chromosome 4, complete sequence Length = 164277 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 aagttcaggagttcaaggcc 241 |||||||||||||||||||| Sbjct: 25204 aagttcaggagttcaaggcc 25185
>gb|AC003664.1|AC003664 Homo sapiens chromosome 17, clone hCIT54K19, complete sequence Length = 202233 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 gacaagttcaggagttcaag 238 |||||||||||||||||||| Sbjct: 21006 gacaagttcaggagttcaag 21025
>emb|CT571263.1| Medicago truncatula chromosome 5 clone mte1-7c20, COMPLETE SEQUENCE Length = 127003 Score = 40.1 bits (20), Expect = 7.2 Identities = 83/104 (79%) Strand = Plus / Plus Query: 72 ctccccaggaggcatgtaatcgtattgcagaggtagtccaagaagctgtcagaaagatgg 131 |||| ||||||||||| ||| | ||||| || || || || || ||| | |||||||||| Sbjct: 97308 ctccgcaggaggcatgcaatagaattgctgaagtggtgcaggaggctataagaaagatgg 97367 Query: 132 agcttgttgctgaagagaaaatgggactgtacaaaaaggctcgc 175 | |||| ||||| ||||| ||| || ||| ||| ||||||||| Sbjct: 97368 aatttgtagctgatgagaagatgagaatgttcaagaaggctcgc 97411
>gb|AC102628.5| Mus musculus chromosome 7, clone RP23-467K15, complete sequence Length = 178563 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 tctgaaaatgaagaatcagg 60 |||||||||||||||||||| Sbjct: 117198 tctgaaaatgaagaatcagg 117217
>emb|AL670175.12| Mouse DNA sequence from clone RP23-309K20 on chromosome 4, complete sequence Length = 168158 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 255 agaagcagcaggtggaggag 274 |||||||||||||||||||| Sbjct: 82768 agaagcagcaggtggaggag 82749
>emb|X05921.1|OCDHPR Rabbit mRNA for dihydropyridine (DHP) receptor (from skeletal muscle) Length = 6083 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 247 gctgcggaagaagcagcaggtggaggag 274 ||||||| ||||||||||| |||||||| Sbjct: 1281 gctgcgggagaagcagcagctggaggag 1308
>gb|M23919.1|RABALP1A Rabbit dihydropyridine-sensitive calcium channel alpha-1 subunit mRNA, complete cds Length = 6080 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 247 gctgcggaagaagcagcaggtggaggag 274 ||||||| ||||||||||| |||||||| Sbjct: 1281 gctgcgggagaagcagcagctggaggag 1308
>dbj|AP001010.4| Homo sapiens genomic DNA, chromosome 18 clone:RP11-701H16, complete sequence Length = 173709 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 aagttcaggagttcaaggcc 241 |||||||||||||||||||| Sbjct: 98884 aagttcaggagttcaaggcc 98865 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,071,746 Number of Sequences: 3902068 Number of extensions: 6071746 Number of successful extensions: 144422 Number of sequences better than 10.0: 69 Number of HSP's better than 10.0 without gapping: 69 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 144062 Number of HSP's gapped (non-prelim): 360 length of query: 535 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 512 effective length of database: 17,143,297,704 effective search space: 8777368424448 effective search space used: 8777368424448 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)